View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18161_low_32 (Length: 334)
Name: NF18161_low_32
Description: NF18161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18161_low_32 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 166; Significance: 8e-89; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 101 - 316
Target Start/End: Original strand, 30927302 - 30927528
Alignment:
| Q |
101 |
tatattgaatgaatttagttagtatattccgtcagtgtataatcattttacacatgcact-------------aattaaactcattttttaattgcaatt |
187 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
30927302 |
tatattgaatgaatttagttagtatattccgtcagtgtataatcattttacacatgcactgatataacacactaattaaactcattttttaattgcaatt |
30927401 |
T |
|
| Q |
188 |
aaactcgtattcaatttatgtagaacatacatgtagatcgacactaacacactgatccatcacacatttcaaggtttaagatctaaaaatttacgaaact |
287 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
30927402 |
aaactcgtattcaatttatgtagaacatacatgtagatcgacactaacacactgagccatcacacacttcaaggtttaagatctaaaaatttacgaaact |
30927501 |
T |
|
| Q |
288 |
caaaataattaaatcaccgaagcacaaaa |
316 |
Q |
| |
|
| |||||||||||||||||||||||||| |
|
|
| T |
30927502 |
c--aataattaaatcaccgaagcacaaaa |
30927528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 13 - 84
Target Start/End: Original strand, 30927247 - 30927318
Alignment:
| Q |
13 |
cagagactaacgacacattttcatatactttaaatactaattattagtactttcatatattgaatgaattta |
84 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30927247 |
cagagactaacgacacattttcatatactttaaatactaattattagtactttcatatattgaatgaattta |
30927318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 102 - 155
Target Start/End: Complemental strand, 18358960 - 18358907
Alignment:
| Q |
102 |
atattgaatgaatttagttagtatattccgtcagtgtataatcattttacacat |
155 |
Q |
| |
|
|||||| ||||||||| |||||||| || ||||||||||||| ||||||||||| |
|
|
| T |
18358960 |
atattgtatgaatttaattagtatactctgtcagtgtataattattttacacat |
18358907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University