View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18161_low_33 (Length: 331)
Name: NF18161_low_33
Description: NF18161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18161_low_33 |
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Alignment Details
Target: chr5 (Bit Score: 298; Significance: 1e-167; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 1 - 310
Target Start/End: Original strand, 36492607 - 36492916
Alignment:
| Q |
1 |
attgatgcaaatttatacatgattttcactcctggaatatctttactatatagtgacaaaatagatgacagcaactgagattgatgtctatctatgcatg |
100 |
Q |
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| T |
36492607 |
attgatgcaaatttatacatgattttcactcctggaatatctttactatatagtgacaagatagatgacagcaactgagattgatgtctatctatgcatg |
36492706 |
T |
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| Q |
101 |
ccttttttgatcaactcacaaacattatttattcatgaaatttattattaagaaagagtgcatcataacatgatcatagcattatgatcaattctgagtt |
200 |
Q |
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| T |
36492707 |
ccattttttatcaactcacaaacattatttattcatgaaatttattattaagaaagagtgcatcataacatgatcatagcattatgatcaattctgagtt |
36492806 |
T |
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| Q |
201 |
ttgtcctcagcttgcacggcaacaaattcagcatgtgagcagcaatggccatggcaatagtaatggcaaccacctccaccatggtgagaaccacctccac |
300 |
Q |
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| T |
36492807 |
ttgtcctcagcttgcacggcaacaaattcagcatgtgagcagcaatggccatggcaatagtaatggcaaccacctccaccatggtgagaaccacctccac |
36492906 |
T |
|
| Q |
301 |
cgtgagaacc |
310 |
Q |
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|||||||||| |
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| T |
36492907 |
cgtgagaacc |
36492916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 103 - 285
Target Start/End: Original strand, 36475745 - 36475924
Alignment:
| Q |
103 |
ttttttgatcaactcacaaacattatttattcatgaaatttattattaagaaagagtgcatcataacatgatcatagcattatgatcaattctgagtttt |
202 |
Q |
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| T |
36475745 |
ttttttgatcaacacacaa-cattatttattcatggaatttagtacta-gaaagagtgcatcatg-catgatcatagcattatgatcagttttgagtatt |
36475841 |
T |
|
| Q |
203 |
gtcctcagcttgcacggcaacaaattcagcatgtgagcagcaatggccatggcaatagtaatggcaaccacctccaccatggt |
285 |
Q |
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| T |
36475842 |
gtccttagcttgcatggcaacaaattcagcatgcgagcagcacctgccatggcaatggtattggcaaccacctccaccgtggt |
36475924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 204 - 304
Target Start/End: Original strand, 36493014 - 36493114
Alignment:
| Q |
204 |
tcctcagcttgcacggcaacaaattcagcatgtgagcagcaatggccatggcaatagtaatggcaaccacctccaccatggtgagaaccacctccaccgt |
303 |
Q |
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||||||| ||| ||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| |
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| T |
36493014 |
tcctcagtttggacggcaacaaattcagcatatgagcagcaatggccatggcaatagtaatgacaaccacctccaccgtggtgagaaccacctccaccgt |
36493113 |
T |
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| Q |
304 |
g |
304 |
Q |
| |
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| |
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| T |
36493114 |
g |
36493114 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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