View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18161_low_35 (Length: 319)

Name: NF18161_low_35
Description: NF18161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18161_low_35
NF18161_low_35
[»] chr8 (2 HSPs)
chr8 (105-307)||(45301652-45301854)
chr8 (133-171)||(43186304-43186342)
[»] chr7 (2 HSPs)
chr7 (131-181)||(49167878-49167928)
chr7 (135-171)||(43255594-43255630)
[»] chr2 (2 HSPs)
chr2 (131-180)||(5095976-5096025)
chr2 (135-171)||(44085282-44085318)
[»] chr1 (4 HSPs)
chr1 (134-171)||(25994942-25994979)
chr1 (133-181)||(34157804-34157852)
chr1 (133-179)||(39128410-39128456)
chr1 (138-171)||(26101402-26101435)
[»] chr5 (2 HSPs)
chr5 (133-180)||(6538869-6538916)
chr5 (141-179)||(15909230-15909268)
[»] chr6 (1 HSPs)
chr6 (135-171)||(29197732-29197768)
[»] chr4 (1 HSPs)
chr4 (141-181)||(18634699-18634739)
[»] chr3 (1 HSPs)
chr3 (135-171)||(32596190-32596226)


Alignment Details
Target: chr8 (Bit Score: 171; Significance: 8e-92; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 105 - 307
Target Start/End: Original strand, 45301652 - 45301854
Alignment:
Q  105 gagagtatgaatataatattagtataagagttgtccaaaaattttcacaaaataattgtacaaatataacttctcaagtgaataatgcacgttttgtacc 204  Q
    ||||||||||||||||||| |||||  || || |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45301652 gagagtatgaatataatatgagtatgggaattttccaaaaattatcacaaaataattgtacaaatataacttctcaagtgaataatgcacgttttgtacc 45301751  T
Q  205 attttaatttgtacgttttagtctcctcgtagagatggtttcgtgaaatctcatggttcttcaaattcttcgtacaagtggattgtagaactctgtttat 304  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  45301752 attttaatttgtacgttttagactcctcgtagagatggtttcgtgaaatctcatggttcttcaaattcttcgtacaagtggattgtagaactctctttat 45301851  T
Q  305 att 307  Q
    |||    
T  45301852 att 45301854  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 133 - 171
Target Start/End: Complemental strand, 43186342 - 43186304
Alignment:
Q  133 agttgtccaaaaattttcacaaaataattgtacaaatat 171  Q
    |||||| |||||||| |||||||||||||||||||||||    
T  43186342 agttgtacaaaaattatcacaaaataattgtacaaatat 43186304  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 131 - 181
Target Start/End: Original strand, 49167878 - 49167928
Alignment:
Q  131 agagttgtccaaaaattttcacaaaataattgtacaaatataacttctcaa 181  Q
    ||||||||| ||||||| ||||||||||||||||||||||| | |||||||    
T  49167878 agagttgtctaaaaattatcacaaaataattgtacaaatatcatttctcaa 49167928  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 135 - 171
Target Start/End: Original strand, 43255594 - 43255630
Alignment:
Q  135 ttgtccaaaaattttcacaaaataattgtacaaatat 171  Q
    |||| |||||||| |||||||||||||||||||||||    
T  43255594 ttgtacaaaaattgtcacaaaataattgtacaaatat 43255630  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 131 - 180
Target Start/End: Original strand, 5095976 - 5096025
Alignment:
Q  131 agagttgtccaaaaattttcacaaaataattgtacaaatataacttctca 180  Q
    ||||||||||||||||| ||||||||| ||||||||||||| | ||||||    
T  5095976 agagttgtccaaaaattatcacaaaatgattgtacaaatatcatttctca 5096025  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 135 - 171
Target Start/End: Complemental strand, 44085318 - 44085282
Alignment:
Q  135 ttgtccaaaaattttcacaaaataattgtacaaatat 171  Q
    ||||||||||||| |||||||||||||||| ||||||    
T  44085318 ttgtccaaaaattgtcacaaaataattgtataaatat 44085282  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 134 - 171
Target Start/End: Original strand, 25994942 - 25994979
Alignment:
Q  134 gttgtccaaaaattttcacaaaataattgtacaaatat 171  Q
    |||||||||||||| |||||||||||||||||||||||    
T  25994942 gttgtccaaaaattatcacaaaataattgtacaaatat 25994979  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 133 - 181
Target Start/End: Complemental strand, 34157852 - 34157804
Alignment:
Q  133 agttgtccaaaaattttcacaaaataattgtacaaatataacttctcaa 181  Q
    ||||||||||||||| ||||||||||||| ||||||||| | |||||||    
T  34157852 agttgtccaaaaattatcacaaaataattatacaaatatcatttctcaa 34157804  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 133 - 179
Target Start/End: Complemental strand, 39128456 - 39128410
Alignment:
Q  133 agttgtccaaaaattttcacaaaataattgtacaaatataacttctc 179  Q
    ||||||||||||||| |  |||||||||||||||||||||| |||||    
T  39128456 agttgtccaaaaattattgcaaaataattgtacaaatataatttctc 39128410  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 171
Target Start/End: Complemental strand, 26101435 - 26101402
Alignment:
Q  138 tccaaaaattttcacaaaataattgtacaaatat 171  Q
    |||||||||| |||||||||||||||||||||||    
T  26101435 tccaaaaattatcacaaaataattgtacaaatat 26101402  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 133 - 180
Target Start/End: Complemental strand, 6538916 - 6538869
Alignment:
Q  133 agttgtccaaaaattttcacaaaataattgtacaaatataacttctca 180  Q
    ||||||| ||||||| ||||||||||||||||||||||| | ||||||    
T  6538916 agttgtcaaaaaattatcacaaaataattgtacaaatatcatttctca 6538869  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 141 - 179
Target Start/End: Complemental strand, 15909268 - 15909230
Alignment:
Q  141 aaaaattttcacaaaataattgtacaaatataacttctc 179  Q
    ||||||| ||||||||||||||||||||||| |||||||    
T  15909268 aaaaattgtcacaaaataattgtacaaatattacttctc 15909230  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 135 - 171
Target Start/End: Complemental strand, 29197768 - 29197732
Alignment:
Q  135 ttgtccaaaaattttcacaaaataattgtacaaatat 171  Q
    ||||||||||||| ||||||||| |||||||||||||    
T  29197768 ttgtccaaaaattatcacaaaatgattgtacaaatat 29197732  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 141 - 181
Target Start/End: Complemental strand, 18634739 - 18634699
Alignment:
Q  141 aaaaattttcacaaaataattgtacaaatataacttctcaa 181  Q
    ||||||| ||||||||||||| ||||||||||| |||||||    
T  18634739 aaaaattgtcacaaaataattatacaaatataatttctcaa 18634699  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 135 - 171
Target Start/End: Original strand, 32596190 - 32596226
Alignment:
Q  135 ttgtccaaaaattttcacaaaataattgtacaaatat 171  Q
    ||||||||||||| | |||||||||||||||||||||    
T  32596190 ttgtccaaaaattattacaaaataattgtacaaatat 32596226  T

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