View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18161_low_37 (Length: 294)
Name: NF18161_low_37
Description: NF18161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18161_low_37 |
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Alignment Details
Target: chr4 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 278
Target Start/End: Original strand, 21197513 - 21197790
Alignment:
| Q |
1 |
tttgggagcagaggttgagcataagtttgcaaaacattcaacagtgaaggacaagagaatctcactgccaattgaatttctcccattttctttgctcctt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21197513 |
tttgggagcagaggttgagcataagtttgcaaaacattcaacagtgaaggacaagagaatctcactgccaattgaatttctcccattttctttgctcctt |
21197612 |
T |
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| Q |
101 |
gagtatgcaagtttataagtggataagaatgagtataaatcctattactttcgagtgttgaaagcctaatccttaccttgccaattctcttatcaactcc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21197613 |
gagtatgcaagtttataagtggataagaatgagtataaatcctatcactttcgagtgttgaaagcctaatccttaccttgccaattctcttatcaactcc |
21197712 |
T |
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| Q |
201 |
tccatcaccatttttccctccaacattattcttacctcctccatgtaagtgtccattatcaaacaccacaattgtgat |
278 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21197713 |
tccatcaccatttttccctccaacattattcttacctcctccatgtaagtgtccattatcaaacaccacaattgtgat |
21197790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 278
Target Start/End: Original strand, 27253355 - 27253632
Alignment:
| Q |
1 |
tttgggagcagaggttgagcataagtttgcaaaacattcaacagtgaaggacaagagaatctcactgccaattgaatttctcccattttctttgctcctt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27253355 |
tttgggagcagaggttgagcataagtttgcaaaacattcaacagtgaaggacaagagaatctcactgccaattgaatttctcccattttctttgctcctt |
27253454 |
T |
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| Q |
101 |
gagtatgcaagtttataagtggataagaatgagtataaatcctattactttcgagtgttgaaagcctaatccttaccttgccaattctcttatcaactcc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27253455 |
gagtatgcaagtttataagtggataagaatgagtataaatcctatcactttcgagtgttgaaagcctaatccttaccttgccaattctcttatcaactcc |
27253554 |
T |
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| Q |
201 |
tccatcaccatttttccctccaacattattcttacctcctccatgtaagtgtccattatcaaacaccacaattgtgat |
278 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27253555 |
tccatcaccatttttccctccaacattattcttacctcctccatgtaagtgtccattatcaaacaccacaattgtgat |
27253632 |
T |
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