View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18161_low_39 (Length: 287)
Name: NF18161_low_39
Description: NF18161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18161_low_39 |
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Alignment Details
Target: chr7 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 19 - 268
Target Start/End: Complemental strand, 22955772 - 22955524
Alignment:
| Q |
19 |
gaacccctaaaacatttgtgatggaagtctttaaagtcgcaggaacattcctattgcaatatatatttgacttggggagaataatatcttgactagaggc |
118 |
Q |
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| T |
22955772 |
gaacccctaaaacatttgtgatggaagtctttaaagtcacaggaacattcctactgcaatacatatatgatttggggagaataatatcttgactagaggc |
22955673 |
T |
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| Q |
119 |
tgcctcatacacagtaaggatgtttttcataatttgagtctaacacacctcaaatctaataaatagaaaacaatcatcaacaaacaagtgttaagggacc |
218 |
Q |
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| T |
22955672 |
tgccttatacacagtaaggatgtttttcataatttgggtctaacgcacctcaactctaataaatagaaaacaatcatcaacaaacaagtgttaagagacc |
22955573 |
T |
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| Q |
219 |
agaggggctcccctacaaatagaagtgcaatggatataacccttctcctc |
268 |
Q |
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| T |
22955572 |
agaggggctcccctacaaata-aagtgcaatggatataacccttctcctc |
22955524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 19 - 154
Target Start/End: Complemental strand, 9282018 - 9281883
Alignment:
| Q |
19 |
gaacccctaaaacatttgtgatggaagtctttaaagtcgcaggaacattcctattgcaatatatatttgacttggggagaataatatcttgactagaggc |
118 |
Q |
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||||||| |||| || ||||||||||||||||||| | ||||||||||||| |||||||||| | ||| ||| | ||| ||||| ||| || |||| | |
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| T |
9282018 |
gaacccccaaaatatatgtgatggaagtctttaaaatgtcaggaacattcctgctgcaatatatctatgatttgcgaagactaatagctttaccagagtc |
9281919 |
T |
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| Q |
119 |
tgcctcatacacagtaaggatgtttttcataatttg |
154 |
Q |
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| T |
9281918 |
ttcctcgtacagaataaggatgtttttcataatttg |
9281883 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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