View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18161_low_42 (Length: 254)

Name: NF18161_low_42
Description: NF18161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18161_low_42
NF18161_low_42
[»] chr6 (25 HSPs)
chr6 (1-237)||(4564416-4564652)
chr6 (1-237)||(4592936-4593172)
chr6 (1-236)||(4617728-4617963)
chr6 (1-227)||(4602504-4602730)
chr6 (1-78)||(4506718-4506795)
chr6 (1-83)||(3172597-3172679)
chr6 (1-230)||(4517030-4517259)
chr6 (1-89)||(4481543-4481631)
chr6 (1-78)||(4514315-4514392)
chr6 (1-73)||(4489555-4489627)
chr6 (1-74)||(4461988-4462061)
chr6 (1-90)||(4470652-4470741)
chr6 (3-90)||(4586485-4586572)
chr6 (9-90)||(4557974-4558055)
chr6 (5-90)||(4561353-4561438)
chr6 (5-90)||(4575157-4575242)
chr6 (2-38)||(4266358-4266394)
chr6 (1-81)||(4571830-4571910)
chr6 (181-232)||(4299195-4299246)
chr6 (1-78)||(4484033-4484111)
chr6 (181-230)||(4568753-4568802)
chr6 (8-65)||(4580915-4580972)
chr6 (5-90)||(4612916-4613001)
chr6 (7-79)||(4259354-4259426)
chr6 (25-81)||(4599028-4599084)
[»] scaffold0199 (1 HSPs)
scaffold0199 (1-223)||(183-405)
[»] chr8 (4 HSPs)
chr8 (1-223)||(1674946-1675168)
chr8 (1-69)||(20863037-20863105)
chr8 (181-232)||(20863217-20863268)
chr8 (3-65)||(16685482-16685544)
[»] chr3 (1 HSPs)
chr3 (6-237)||(1281819-1282050)
[»] scaffold0288 (1 HSPs)
scaffold0288 (7-219)||(2918-3130)
[»] chr5 (1 HSPs)
chr5 (3-38)||(24103903-24103938)


Alignment Details
Target: chr6 (Bit Score: 217; Significance: 1e-119; HSPs: 25)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 4564652 - 4564416
Alignment:
Q  1 tgatatgcagatgagagctatctaacaaatggatatttggaaactaatgtagattggattccaggtttgaaaaactttcgattaaaggatatctttgaca 100  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  4564652 tgatatgcagatcagagctatctaacaaatggatatttggaaactaatgtagattggattccaggtttgaaaaactttcggttaaaggatatctttgaca 4564553  T
Q  101 gtatcaggacaacagatccaaatgatattatgttagactttgtaattgatgcggctgataaagttcctggagactctacaattgttttgaatactttcaa 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |    
T  4564552 gtatcaggacaacagatccaaatgatattatgttagactttgtaattgatgcggctgataaagttcttggagactctacaattgttttgaatactttcca 4564453  T
Q  201 tgaacttgagagtgatgtaataaatgctctctcctct 237  Q
    ||||||| |||||||||||||||||||||||||||||    
T  4564452 tgaactttagagtgatgtaataaatgctctctcctct 4564416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 4593172 - 4592936
Alignment:
Q  1 tgatatgcagatgagagctatctaacaaatggatatttggaaactaatgtagattggattccaggtttgaaaaactttcgattaaaggatatctttgaca 100  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || ||||| ||   ||||     
T  4593172 tgatatgcagatgagagttatctaacaaatggatatttggaaactaaagtagattggattccaggtttgaaaaactttcggttgaaggacattgctgact 4593073  T
Q  101 gtatcaggacaacagatccaaatgatattatgttagactttgtaattgatgcggctgataaagttcctggagactctacaattgttttgaatactttcaa 200  Q
     |||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| || |  | ||||||| ||| ||||||||||||||||    
T  4593072 atatcaggacaacagatccaaatgatattatgttaaactttgtaattgatgtggctgataaagatcataaaaactctactattattttgaatactttcaa 4592973  T
Q  201 tgaacttgagagtgatgtaataaatgctctctcctct 237  Q
    |||||||||||||||||||||||||||||||||||||    
T  4592972 tgaacttgagagtgatgtaataaatgctctctcctct 4592936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 4617963 - 4617728
Alignment:
Q  1 tgatatgcagatgagagctatctaacaaatggatatttggaaactaatgtagattggattccaggtttgaaaaactttcgattaaaggatatctttgaca 100  Q
    ||||||||||||||||| |||||||||||||||| |||||||||||| |||||||||||||| ||||||||||||||||| || ||||| ||| |||||     
T  4617963 tgatatgcagatgagagttatctaacaaatggatgtttggaaactaaagtagattggattcccggtttgaaaaactttcggttgaaggacatcgttgact 4617864  T
Q  101 gtatcaggacaacagatccaaatgatattatgttagactttgtaattgatgcggctgataaagttcctggagactctacaattgttttgaatactttcaa 200  Q
     ||||||||||||| |||||||||||||||||||||| ||  | || || |  || |||  ||||     |||| |||| ||| ||||||||||||||||    
T  4617863 ttatcaggacaacaaatccaaatgatattatgttagaattctttatagaagttgcagatcgagttaacaaagacactactattcttttgaatactttcaa 4617764  T
Q  201 tgaacttgagagtgatgtaataaatgctctctcctc 236  Q
    ||||||||||||||||||||||||||||||||||||    
T  4617763 tgaacttgagagtgatgtaataaatgctctctcctc 4617728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 4602730 - 4602504
Alignment:
Q  1 tgatatgcagatgagagctatctaacaaatggatatttggaaactaatgtagattggattccaggtttgaaaaactttcgattaaaggatatctttgaca 100  Q
    |||||||||||||| || |||||||||||||||| ||||||||| || |||||||||||||||||||||||||||||||| || ||||| ||  |||||     
T  4602730 tgatatgcagatgatagttatctaacaaatggatgtttggaaacaaaagtagattggattccaggtttgaaaaactttcggttgaaggacattcttgact 4602631  T
Q  101 gtatcaggacaacagatccaaatgatattatgttagactttgtaattgatgcggctgataaagttcctggagactctacaattgttttgaatactttcaa 200  Q
     ||||||||||||||||||||||||||||||| |||| ||  |  ||||    || |||| | ||  | |||||||||| ||| |||||||||||| |||    
T  4602630 atatcaggacaacagatccaaatgatattatggtagaattcttttttgaaattgcagatagatttaatagagactctactattcttttgaatacttacaa 4602531  T
Q  201 tgaacttgagagtgatgtaataaatgc 227  Q
    ||||||||||||||||||||| |||||    
T  4602530 tgaacttgagagtgatgtaatgaatgc 4602504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 4506795 - 4506718
Alignment:
Q  1 tgatatgcagatgagagctatctaacaaatggatatttggaaactaatgtagattggattccaggtttgaaaaacttt 78  Q
    ||||||||||||||||| ||||||||||||||||||||||| ||||| ||||| |||||||||||||||| |||||||    
T  4506795 tgatatgcagatgagagttatctaacaaatggatatttggacactaaggtagactggattccaggtttgagaaacttt 4506718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 3172679 - 3172597
Alignment:
Q  1 tgatatgcagatgagagctatctaacaaatggatatttggaaactaatgtagattggattccaggtttgaaaaactttcgatt 83  Q
    ||||||||||||||||| |||  |||||||||||||||||| ||||  || || |||||||||||||||||||||||| ||||    
T  3172679 tgatatgcagatgagagttatgaaacaaatggatatttggacactatagttgactggattccaggtttgaaaaactttagatt 3172597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 4517259 - 4517030
Alignment:
Q  1 tgatatgcagatgagagctatctaacaaatggatatttggaaactaatgtagattggattccaggtttgaaaaactttcgattaaaggatatctttgaca 100  Q
    ||||||||||||||||| ||| | ||||||||||||||||| ||||| || || |||||||||||||||  ||||||| || |||||||  |   ||||     
T  4517259 tgatatgcagatgagagttatttgacaaatggatatttggacactaaagttgactggattccaggtttgggaaactttagactaaaggacctgcctgact 4517160  T
Q  101 gtatcaggacaacagatccaaatgatattatgttagactttgtaattgatgcggctgataaagttcctggagactctacaattgttttgaatactttcaa 200  Q
     ||| || || || ||||| |||||||| ||| || | ||| | ||||| ||||| ||||  |||| || ||    | | |||||||| |||||||   |    
T  4517159 ttataagaactactgatcctaatgatataatgataaaatttatcattgaagcggccgatagggttcatgaagctaattctattgttttcaatacttctga 4517060  T
Q  201 tgaacttgagagtgatgtaataaatgctct 230  Q
    ||||||||||| ||||||||||||||||||    
T  4517059 tgaacttgagaatgatgtaataaatgctct 4517030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 4481631 - 4481543
Alignment:
Q  1 tgatatgcagatgagagctatctaacaaatggatatttggaaactaatgtagattggattccaggtttgaaaaactttcgattaaagga 89  Q
    ||||||||||||||||| ||| ||||| |||||||||||||  | |  ||||| |||||||||||||||||||||||| |||| |||||    
T  4481631 tgatatgcagatgagagttatttaacagatggatatttggacgcaacagtagactggattccaggtttgaaaaactttagattgaagga 4481543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 4514315 - 4514392
Alignment:
Q  1 tgatatgcagatgagagctatctaacaaatggatatttggaaactaatgtagattggattccaggtttgaaaaacttt 78  Q
    ||||||||||||||||| ||| | ||||||||||||||||| ||||| || || |||||||||||||||  |||||||    
T  4514315 tgatatgcagatgagagttatttgacaaatggatatttggacactaaagttgactggattccaggtttgcgaaacttt 4514392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 4489555 - 4489627
Alignment:
Q  1 tgatatgcagatgagagctatctaacaaatggatatttggaaactaatgtagattggattccaggtttgaaaa 73  Q
    |||||||||||||||||  |||||||| ||||| ||||||| ||||| || || |||||||||||||||||||    
T  4489555 tgatatgcagatgagagtaatctaacagatggaaatttggacactaaagttgaatggattccaggtttgaaaa 4489627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 4462061 - 4461988
Alignment:
Q  1 tgatatgcagatgagagctatctaacaaatggatatttggaaactaatgtagattggattccaggtttgaaaaa 74  Q
    ||||||||||||||||  ||||||||| |||||||||| || ||| | || || ||||||||||||||||||||    
T  4462061 tgatatgcagatgagatttatctaacagatggatatttagacactgaagttgactggattccaggtttgaaaaa 4461988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 4470741 - 4470652
Alignment:
Q  1 tgatatgcagatgagagctatctaacaaatggatatttggaaactaatgtagattggattccaggtttgaaaaactttcgattaaaggat 90  Q
    ||||||||||||||||| ||||||| | |||||||||| || | | | || || |||||||||||||||||||||||  |||| ||||||    
T  4470741 tgatatgcagatgagagttatctaatagatggatatttcgacattgaagttgactggattccaggtttgaaaaacttcagattgaaggat 4470652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 90
Target Start/End: Complemental strand, 4586572 - 4586485
Alignment:
Q  3 atatgcagatgagagctatctaacaaatggatatttggaaactaatgtagattggattccaggtttgaaaaactttcgattaaaggat 90  Q
    |||||||||| |||| ||||| ||||| ||||||||||| ||||| || || || |||||||| ||| | ||||||||| ||||||||    
T  4586572 atatgcagataagagttatctgacaaacggatatttggacactaaagtggactgtattccaggattggagaactttcgactaaaggat 4586485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 9 - 90
Target Start/End: Complemental strand, 4558055 - 4557974
Alignment:
Q  9 agatgagagctatctaacaaatggatatttggaaactaatgtagattggattccaggtttgaaaaactttcgattaaaggat 90  Q
    ||||||||| ||||| ||||| ||||||||||| ||||| || ||||| |||||||| ||| | ||||||||| | ||||||    
T  4558055 agatgagagttatctgacaaacggatatttggacactaaagtggattgtattccaggattgcagaactttcgactgaaggat 4557974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 5 - 90
Target Start/End: Complemental strand, 4561438 - 4561353
Alignment:
Q  5 atgcagatgagagctatctaacaaatggatatttggaaactaatgtagattggattccaggtttgaaaaactttcgattaaaggat 90  Q
    |||||||||||||  |||||||||||| |||| |||| || || || || ||||| |||||||||||||||||  |||| ||||||    
T  4561438 atgcagatgagagtgatctaacaaatgaatatctggacacgaaagttgactggatcccaggtttgaaaaacttcagattgaaggat 4561353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 5 - 90
Target Start/End: Complemental strand, 4575242 - 4575157
Alignment:
Q  5 atgcagatgagagctatctaacaaatggatatttggaaactaatgtagattggattccaggtttgaaaaactttcgattaaaggat 90  Q
    |||||||||||||  |||||||||||| ||||||||| || ||  | || ||||| |||||||||||||||||  |||| ||||||    
T  4575242 atgcagatgagagtgatctaacaaatgaatatttggacacaaaaattgactggatcccaggtttgaaaaacttcagattgaaggat 4575157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 38
Target Start/End: Original strand, 4266358 - 4266394
Alignment:
Q  2 gatatgcagatgagagctatctaacaaatggatattt 38  Q
    |||||||||||||||| ||||||||||||||||||||    
T  4266358 gatatgcagatgagagttatctaacaaatggatattt 4266394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 4571910 - 4571830
Alignment:
Q  1 tgatatgcagatgagagctatctaacaaatggatatttggaaactaatgtagattggattccaggtttgaaaaactttcga 81  Q
    ||||||||||||||||| ||||| ||||| ||||||||||| ||||| || || || || |||||  |||| |||||||||    
T  4571910 tgatatgcagatgagagttatctgacaaacggatatttggacactaaagtggactgtatgccaggactgaagaactttcga 4571830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 181 - 232
Target Start/End: Original strand, 4299195 - 4299246
Alignment:
Q  181 attgttttgaatactttcaatgaacttgagagtgatgtaataaatgctctct 232  Q
    |||||||| |||||||   |||||||||||||||||||||| ||||||||||    
T  4299195 attgtttttaatacttatgatgaacttgagagtgatgtaatgaatgctctct 4299246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 4484033 - 4484111
Alignment:
Q  1 tgatatgcagatgagagctatctaa-caaatggatatttggaaactaatgtagattggattccaggtttgaaaaacttt 78  Q
    ||||||||| || |||| ||||||| |||||| ||||||||| ||| | ||||| ||| |||||| |||||||||||||    
T  4484033 tgatatgcaaataagagttatctaagcaaatgtatatttggacactgaagtagactgggttccagatttgaaaaacttt 4484111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 181 - 230
Target Start/End: Complemental strand, 4568802 - 4568753
Alignment:
Q  181 attgttttgaatactttcaatgaacttgagagtgatgtaataaatgctct 230  Q
    |||||||| |||||||  ||||||||||||||||||||| |||| |||||    
T  4568802 attgttttcaatacttataatgaacttgagagtgatgtagtaaaggctct 4568753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 8 - 65
Target Start/End: Complemental strand, 4580972 - 4580915
Alignment:
Q  8 cagatgagagctatctaacaaatggatatttggaaactaatgtagattggattccagg 65  Q
    ||||||| || ||||| ||||| ||||||||||| ||||| |||||||| ||||||||    
T  4580972 cagatgacagttatctcacaaacggatatttggacactaaagtagattgtattccagg 4580915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 90
Target Start/End: Original strand, 4612916 - 4613001
Alignment:
Q  5 atgcagatgagagctatctaacaaatggatatttggaaactaatgtagattggattccaggtttgaaaaactttcgattaaaggat 90  Q
    ||||||||||||| ||||| ||||| ||||||||||| ||||| || || || |||| ||| ||| | ||||||||| | ||||||    
T  4612916 atgcagatgagagttatctgacaaacggatatttggatactaaagtggactgtattcaaggattgcagaactttcgactgaaggat 4613001  T

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Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 79
Target Start/End: Original strand, 4259354 - 4259426
Alignment:
Q  7 gcagatgagagctatctaacaaatggatatttggaaactaatgtagattggattccaggtttgaaaaactttc 79  Q
    |||||| ||||||||||||||||||||||| |||| || || ||||| ||  |||| || ||||| |||||||    
T  4259354 gcagataagagctatctaacaaatggatatctggataccaaagtagactgtgttcctggattgaagaactttc 4259426  T

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Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 81
Target Start/End: Complemental strand, 4599084 - 4599028
Alignment:
Q  25 acaaatggatatttggaaactaatgtagattggattccaggtttgaaaaactttcga 81  Q
    ||||| ||||||||||||||||| |||||||| ||||| ||  || |||||||||||    
T  4599084 acaaacggatatttggaaactaaagtagattgtattcctggactgcaaaactttcga 4599028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0199 (Bit Score: 139; Significance: 8e-73; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 405 - 183
Alignment:
Q  1 tgatatgcagatgagagctatctaacaaatggatatttggaaactaatgtagattggattccaggtttgaaaaactttcgattaaaggatatctttgaca 100  Q
    |||||||||||||||||  ||||||||||||||||||||||||| || || || |||||||||||||||||||||||||| || |||||| |  |||||     
T  405 tgatatgcagatgagagacatctaacaaatggatatttggaaacaaaagtcgagtggattccaggtttgaaaaactttcggttgaaggatgttgttgact 306  T
Q  101 gtatcaggacaacagatccaaatgatattatgttagactttgtaattgatgcggctgataaagttcctggagactctacaattgttttgaatactttcaa 200  Q
    ||||||| ||||| ||||||||||||||||||||||||||| |||||||||  |||||||||||||   |||||||||||||| ||||||||||||||||    
T  305 gtatcagaacaacggatccaaatgatattatgttagactttttaattgatgtcgctgataaagttcacagagactctacaattattttgaatactttcaa 206  T
Q  201 tgaacttgagagtgatgtaataa 223  Q
    |||||||||||||||||||||||    
T  205 tgaacttgagagtgatgtaataa 183  T

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Target: chr8 (Bit Score: 139; Significance: 8e-73; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 1675168 - 1674946
Alignment:
Q  1 tgatatgcagatgagagctatctaacaaatggatatttggaaactaatgtagattggattccaggtttgaaaaactttcgattaaaggatatctttgaca 100  Q
    |||||||||||||||||  ||||||||||||||||||||||||| || || || |||||||||||||||||||||||||| || |||||| |  |||||     
T  1675168 tgatatgcagatgagagacatctaacaaatggatatttggaaacaaaagtcgagtggattccaggtttgaaaaactttcggttgaaggatgttgttgact 1675069  T
Q  101 gtatcaggacaacagatccaaatgatattatgttagactttgtaattgatgcggctgataaagttcctggagactctacaattgttttgaatactttcaa 200  Q
    ||||||| ||||| ||||||||||||||||||||||||||| |||||||||  |||||||||||||   |||||||||||||| ||||||||||||||||    
T  1675068 gtatcagaacaacggatccaaatgatattatgttagactttttaattgatgtcgctgataaagttcacagagactctacaattattttgaatactttcaa 1674969  T
Q  201 tgaacttgagagtgatgtaataa 223  Q
    |||||||||||||||||||||||    
T  1674968 tgaacttgagagtgatgtaataa 1674946  T

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Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 20863037 - 20863105
Alignment:
Q  1 tgatatgcagatgagagctatctaacaaatggatatttggaaactaatgtagattggattccaggtttg 69  Q
    |||||| |||||||||| ||||||||||||||||||||||| ||||| || ||| ||||||||||||||    
T  20863037 tgatatacagatgagagttatctaacaaatggatatttggagactaaagttgatcggattccaggtttg 20863105  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 181 - 232
Target Start/End: Original strand, 20863217 - 20863268
Alignment:
Q  181 attgttttgaatactttcaatgaacttgagagtgatgtaataaatgctctct 232  Q
    |||||||| |||||||||||||| |||||||||||||| || |||| |||||    
T  20863217 attgttttcaatactttcaatgagcttgagagtgatgttatgaatgttctct 20863268  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 65
Target Start/End: Original strand, 16685482 - 16685544
Alignment:
Q  3 atatgcagatgagagctatctaacaaatggatatttggaaactaatgtagattggattccagg 65  Q
    ||||||||||||||| ||||| ||||| ||||||||||| ||||| || || || ||||||||    
T  16685482 atatgcagatgagagttatctgacaaacggatatttggacactaaagtggactgtattccagg 16685544  T

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Target: chr3 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 6 - 237
Target Start/End: Complemental strand, 1282050 - 1281819
Alignment:
Q  6 tgcagatgagagctatctaacaaatggatatttggaaactaatgtagattggattccaggtttgaaaaactttcgattaaaggatatctttgacagtatc 105  Q
    |||||||||||| |||||||||||||||||||||||||| || |||||||||||||||||||||||||| || || || ||||||||  |||||  ||||    
T  1282050 tgcagatgagagttatctaacaaatggatatttggaaacaaaagtagattggattccaggtttgaaaaatttccggttgaaggatattgttgactttatc 1281951  T
Q  106 aggacaacagatccaaatgatattatgttagactttgtaattgatgcggctgataaagttcctggagactctacaattgttttgaatactttcaatgaac 205  Q
    ||||||| ||||| ||| |||||||||||||| ||  | |||||   ||| |||| ||||  | |||||||||| ||| |||||||||||||||||||||    
T  1281950 aggacaagagatcgaaacgatattatgttagaattctttattgaaatggcagatagagttaatagagactctactattcttttgaatactttcaatgaac 1281851  T
Q  206 ttgagagtgatgtaataaatgctctctcctct 237  Q
    ||||||||||||||||||||||||||||||||    
T  1281850 ttgagagtgatgtaataaatgctctctcctct 1281819  T

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Target: scaffold0288 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0288
Description:

Target: scaffold0288; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 219
Target Start/End: Original strand, 2918 - 3130
Alignment:
Q  7 gcagatgagagctatctaacaaatggatatttggaaactaatgtagattggattccaggtttgaaaaactttcgattaaaggatatctttgacagtatca 106  Q
    |||||||| || ||| | |||| |||||||||||| |  || |||||||| ||||| ||| |||||||||||||| |||||||  |   ||||  ||| |    
T  2918 gcagatgatagttatttgacaagtggatatttggacaacaaagtagattgtattccgggtatgaaaaactttcgactaaaggaccttcctgactttataa 3017  T
Q  107 ggacaacagatccaaatgatattatgttagactttgtaattgatgcggctgataaagttcctggagactctacaattgttttgaatactttcaatgaact 206  Q
    | |||| |||||  |||||| ||||| |||| ||| | ||||| || || ||| || |||   |||  ||| |||||||||| || ||||  ||||||||    
T  3018 gaacaaaagatctgaatgattttatggtagaatttttcattgaagcagcagatcaatttcacagagcttctgcaattgtttttaacacttataatgaact 3117  T
Q  207 tgagagtgatgta 219  Q
    |||||||||||||    
T  3118 tgagagtgatgta 3130  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 3 - 38
Target Start/End: Complemental strand, 24103938 - 24103903
Alignment:
Q  3 atatgcagatgagagctatctaacaaatggatattt 38  Q
    ||||||||||||||| ||||||||||||||||||||    
T  24103938 atatgcagatgagagttatctaacaaatggatattt 24103903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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