View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18161_low_5 (Length: 706)

Name: NF18161_low_5
Description: NF18161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18161_low_5
NF18161_low_5
[»] chr6 (16 HSPs)
chr6 (139-688)||(5142322-5142895)
chr6 (1-35)||(23925334-23925368)
chr6 (1-35)||(30824561-30824595)
chr6 (1-34)||(5004061-5004094)
chr6 (1-34)||(5489151-5489184)
chr6 (1-34)||(5994699-5994732)
chr6 (1-34)||(13490193-13490226)
chr6 (1-34)||(25550295-25550328)
chr6 (1-34)||(35091708-35091741)
chr6 (1-36)||(25506573-25506608)
chr6 (1-35)||(11279836-11279870)
chr6 (1-34)||(11053702-11053735)
chr6 (1-34)||(13825703-13825736)
chr6 (1-34)||(15391643-15391676)
chr6 (1-34)||(33298085-33298118)
chr6 (44-128)||(3674040-3674124)
[»] chr5 (17 HSPs)
chr5 (59-128)||(32161799-32161868)
chr5 (1-35)||(19223554-19223588)
chr5 (1-35)||(29186310-29186344)
chr5 (1-34)||(20372945-20372978)
chr5 (1-34)||(20398667-20398700)
chr5 (1-34)||(24956878-24956911)
chr5 (1-34)||(24965341-24965374)
chr5 (1-35)||(31410889-31410923)
chr5 (1-35)||(31421788-31421822)
chr5 (1-34)||(1728191-1728224)
chr5 (1-34)||(23350108-23350141)
chr5 (1-34)||(28843940-28843973)
chr5 (1-34)||(28852550-28852583)
chr5 (7-36)||(29188491-29188520)
chr5 (1-34)||(43598078-43598111)
chr5 (1-34)||(43603570-43603603)
chr5 (1-34)||(43609062-43609095)
[»] scaffold0039 (1 HSPs)
scaffold0039 (1-38)||(40865-40902)
[»] scaffold0111 (1 HSPs)
scaffold0111 (1-36)||(33033-33068)
[»] chr4 (9 HSPs)
chr4 (1-36)||(8103120-8103155)
chr4 (1-35)||(10638327-10638361)
chr4 (1-35)||(12428510-12428544)
chr4 (1-35)||(21532336-21532370)
chr4 (1-35)||(27343723-27343757)
chr4 (1-34)||(8094314-8094347)
chr4 (1-34)||(12996476-12996509)
chr4 (1-34)||(52295604-52295637)
chr4 (1-34)||(4523712-4523745)
[»] scaffold0497 (1 HSPs)
scaffold0497 (1-35)||(10992-11026)
[»] scaffold0431 (1 HSPs)
scaffold0431 (1-35)||(138-172)
[»] scaffold0083 (1 HSPs)
scaffold0083 (1-35)||(15812-15846)
[»] scaffold0002 (1 HSPs)
scaffold0002 (1-35)||(121227-121261)
[»] chr8 (10 HSPs)
chr8 (1-35)||(17683828-17683862)
chr8 (1-35)||(17973564-17973598)
chr8 (1-35)||(26876086-26876120)
chr8 (1-35)||(30938281-30938315)
chr8 (1-34)||(17664672-17664705)
chr8 (1-34)||(26873636-26873669)
chr8 (1-35)||(1407105-1407139)
chr8 (1-34)||(4839814-4839847)
chr8 (1-34)||(39837594-39837627)
chr8 (1-34)||(39845637-39845670)
[»] chr7 (6 HSPs)
chr7 (1-35)||(12978454-12978488)
chr7 (1-34)||(4941609-4941642)
chr7 (1-34)||(10439937-10439970)
chr7 (1-34)||(18304424-18304457)
chr7 (1-35)||(30244774-30244808)
chr7 (1-34)||(13839531-13839564)
[»] chr3 (19 HSPs)
chr3 (1-35)||(30508-30542)
chr3 (1-34)||(8197728-8197761)
chr3 (1-34)||(14538637-14538670)
chr3 (1-34)||(17628265-17628298)
chr3 (1-34)||(17919199-17919232)
chr3 (1-34)||(27341367-27341400)
chr3 (1-34)||(28470249-28470282)
chr3 (1-34)||(50824352-50824385)
chr3 (1-34)||(50851475-50851508)
chr3 (4-35)||(18039010-18039041)
chr3 (1-34)||(2211239-2211272)
chr3 (1-34)||(8154676-8154709)
chr3 (1-34)||(9525466-9525499)
chr3 (1-34)||(9555140-9555173)
chr3 (139-184)||(9668699-9668744)
chr3 (1-34)||(17933655-17933688)
chr3 (1-34)||(41006556-41006589)
chr3 (1-34)||(41015336-41015369)
chr3 (7-35)||(21186746-21186774)
[»] chr2 (22 HSPs)
chr2 (1-35)||(14582924-14582958)
chr2 (1-35)||(15953104-15953138)
chr2 (1-35)||(25483600-25483634)
chr2 (1-35)||(25491206-25491240)
chr2 (1-35)||(42249487-42249521)
chr2 (1-34)||(15944589-15944622)
chr2 (1-34)||(17687430-17687463)
chr2 (1-34)||(20372345-20372378)
chr2 (1-34)||(20621518-20621551)
chr2 (1-34)||(35138593-35138626)
chr2 (1-34)||(35146929-35146962)
chr2 (1-34)||(41233876-41233909)
chr2 (1-35)||(38168389-38168423)
chr2 (1-35)||(44372704-44372738)
chr2 (1-35)||(44388615-44388649)
chr2 (5-34)||(24285696-24285725)
chr2 (5-34)||(24292372-24292401)
chr2 (1-38)||(26903365-26903402)
chr2 (1-34)||(34070636-34070669)
chr2 (1-34)||(42565961-42565994)
chr2 (1-34)||(42574585-42574618)
chr2 (7-35)||(21322848-21322876)
[»] chr1 (11 HSPs)
chr1 (1-35)||(35104096-35104130)
chr1 (1-34)||(21498930-21498963)
chr1 (1-34)||(31539954-31539987)
chr1 (1-34)||(31548523-31548556)
chr1 (4-35)||(44320227-44320258)
chr1 (1-35)||(20314059-20314093)
chr1 (1-34)||(3432922-3432955)
chr1 (1-34)||(29221520-29221553)
chr1 (1-38)||(32137786-32137823)
chr1 (7-35)||(22646705-22646733)
chr1 (4-32)||(28457556-28457584)
[»] scaffold0991 (1 HSPs)
scaffold0991 (1-34)||(405-438)
[»] scaffold0156 (1 HSPs)
scaffold0156 (1-34)||(35388-35421)
[»] scaffold0048 (1 HSPs)
scaffold0048 (1-34)||(7661-7694)
[»] scaffold0016 (1 HSPs)
scaffold0016 (1-34)||(23464-23497)
[»] scaffold0015 (1 HSPs)
scaffold0015 (1-34)||(192528-192561)
[»] scaffold0209 (1 HSPs)
scaffold0209 (1-35)||(116-150)
[»] scaffold0863 (1 HSPs)
scaffold0863 (5-34)||(408-437)
[»] scaffold0222 (1 HSPs)
scaffold0222 (5-34)||(20518-20547)
[»] scaffold0044 (1 HSPs)
scaffold0044 (1-34)||(81818-81851)
[»] scaffold0027 (1 HSPs)
scaffold0027 (1-34)||(65710-65743)
[»] scaffold1487 (1 HSPs)
scaffold1487 (1-36)||(775-811)
[»] scaffold0391 (1 HSPs)
scaffold0391 (8-36)||(2-30)


Alignment Details
Target: chr6 (Bit Score: 337; Significance: 0; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 139 - 688
Target Start/End: Complemental strand, 5142895 - 5142322
Alignment:
Q  139 ctcttcaagaacatttcggctaaaagaaatttccaacttatccaaattaatgagtttgccagtaattgtctggtatagcttaagtacctcattaacattt 238  Q
    |||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| ||| |||||| ||||||||||||||||||||||||| ||||    
T  5142895 ctcttcaagaacatttcggctaaaagaaatttccgacttatccagattaatgagtttggcagaaattgtttggtatagcttaagtacctcattaatattt 5142796  T
Q  239 tgagcattctgatggcaatccctacataaaataaggctatcatcagcnnnnnnn--gagatgggtaatacttggcgctcctctagctattttcaatccat 336  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||         |||||||||||||||||| |||||||||||||||||||||||||    
T  5142795 tgagcattctaatggcaatccctacataaaataaggctatcatcagctaaaaaaaagagatgggtaatacttggtgctcctctagctattttcaatccat 5142696  T
Q  337 gtaaaacattttcatcttgggctctggtgagaaggcttgaaaacacctctgcacaaatattaa-caaataggtgataaggggtccccttggcgtaaacca 435  Q
    |||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| ||| |||||||||||||||||||||||||| |||||||||    
T  5142695 gtaaaacattttcatcttgggctctggtgagaag-cttaaaaacacctctgcacaaataataaacaaataggtgataaggggtccccttgacgtaaacca 5142597  T
Q  436 cgctttggagagaaattttgacacgggctaccattgagcaacatagaaaaagacaccgaagaaatacaattttgaacaagattttgccatttctgagaaa 535  Q
    | |||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||    
T  5142596 ctctttggagagaaattttgacacgggctaccattgagcagcatagaaaaagaaaccgaagaaatacaattttgaacaagattttgccatttttgagaaa 5142497  T
Q  536 aacccatagattt-------------------tcccatt----tcgatcatatgctttcggcatgtccaatttgatccccacatatcccttcttaccaag 612  Q
    |||||||||||||                   |||||||    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  5142496 aacccatagattttaggataacaatgagaaaatcccattcaattcgatcatatgctttcgccatgtccaatttgatccccacatatcccttcttaccaag 5142397  T
Q  613 cnnnnnnnnncctcatccaatgaaaagattcaaaagcaattaaagcattatctgtaattaatctttcaggaacaaa 688  Q
    |         || ||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| ||||||    
T  5142396 c-ttttttttccacatccaatgaaaatattcaaaagcaattaaagcattacctgtaattaatctttcagaaacaaa 5142322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 23925368 - 23925334
Alignment:
Q  1 atagagaaaagtggtcaaaatttggggtatgacaa 35  Q
    |||||||||||||||||||||||||||||||||||    
T  23925368 atagagaaaagtggtcaaaatttggggtatgacaa 23925334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 30824561 - 30824595
Alignment:
Q  1 atagagaaaagtggtcaaaatttggggtatgacaa 35  Q
    |||||||||||||||||||||||||||||||||||    
T  30824561 atagagaaaagtggtcaaaatttggggtatgacaa 30824595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 5004094 - 5004061
Alignment:
Q  1 atagagaaaagtggtcaaaatttggggtatgaca 34  Q
    ||||||||||||||||||||||||||||||||||    
T  5004094 atagagaaaagtggtcaaaatttggggtatgaca 5004061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 5489151 - 5489184
Alignment:
Q  1 atagagaaaagtggtcaaaatttggggtatgaca 34  Q
    ||||||||||||||||||||||||||||||||||    
T  5489151 atagagaaaagtggtcaaaatttggggtatgaca 5489184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 5994732 - 5994699
Alignment:
Q  1 atagagaaaagtggtcaaaatttggggtatgaca 34  Q
    ||||||||||||||||||||||||||||||||||    
T  5994732 atagagaaaagtggtcaaaatttggggtatgaca 5994699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 13490226 - 13490193
Alignment:
Q  1 atagagaaaagtggtcaaaatttggggtatgaca 34  Q
    ||||||||||||||||||||||||||||||||||    
T  13490226 atagagaaaagtggtcaaaatttggggtatgaca 13490193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 25550328 - 25550295
Alignment:
Q  1 atagagaaaagtggtcaaaatttggggtatgaca 34  Q
    ||||||||||||||||||||||||||||||||||    
T  25550328 atagagaaaagtggtcaaaatttggggtatgaca 25550295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 35091708 - 35091741
Alignment:
Q  1 atagagaaaagtggtcaaaatttggggtatgaca 34  Q
    ||||||||||||||||||||||||||||||||||    
T  35091708 atagagaaaagtggtcaaaatttggggtatgaca 35091741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 25506573 - 25506608
Alignment:
Q  1 atagagaaaagtggtcaaaatttggggtatgacaaa 36  Q
    ||||||||||||| ||||||||||||||||||||||    
T  25506573 atagagaaaagtgatcaaaatttggggtatgacaaa 25506608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 11279870 - 11279836
Alignment:
Q  1 atagagaaaagtggtcaaaatttggggtatgacaa 35  Q
    |||||| ||||||||||||||||||||||||||||    
T  11279870 atagaggaaagtggtcaaaatttggggtatgacaa 11279836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 11053735 - 11053702
Alignment:
Q  1 atagagaaaagtggtcaaaatttggggtatgaca 34  Q
    ||||| ||||||||||||||||||||||||||||    
T  11053735 atagaaaaaagtggtcaaaatttggggtatgaca 11053702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 13825736 - 13825703
Alignment:
Q  1 atagagaaaagtggtcaaaatttggggtatgaca 34  Q
    ||||||||||||| ||||||||||||||||||||    
T  13825736 atagagaaaagtgatcaaaatttggggtatgaca 13825703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 15391643 - 15391676
Alignment:
Q  1 atagagaaaagtggtcaaaatttggggtatgaca 34  Q
    |||||||||||||||||||||||||| |||||||    
T  15391643 atagagaaaagtggtcaaaatttgggatatgaca 15391676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 33298118 - 33298085
Alignment:
Q  1 atagagaaaagtggtcaaaatttggggtatgaca 34  Q
    |||||||||||||||||||| |||||||||||||    
T  33298118 atagagaaaagtggtcaaaagttggggtatgaca 33298085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 44 - 128
Target Start/End: Original strand, 3674040 - 3674124
Alignment:
Q  44 tgttttgaacgaccaacaaaagttggtaaacccaaatatttcaaatgacattcaacggccttaatttgcattcaactttggaaca 128  Q
    |||||||| || || ||||||  |||||||||||| |||||| ||||||| || |   ||||||||||||| |||||||| ||||    
T  3674040 tgttttgatcgccccacaaaaactggtaaacccaagtatttcgaatgacactccagaaccttaatttgcatccaactttgcaaca 3674124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 59 - 128
Target Start/End: Original strand, 32161799 - 32161868
Alignment:
Q  59 acaaaagttggtaaacccaaatatttcaaatgacattcaacggccttaatttgcattcaactttggaaca 128  Q
    ||||||| |||||||||||| |||||| ||||||| || ||| ||||||||||||| |||||||||||||    
T  32161799 acaaaagctggtaaacccaagtatttcgaatgacactccacgaccttaatttgcatccaactttggaaca 32161868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 19223588 - 19223554
Alignment:
Q  1 atagagaaaagtggtcaaaatttggggtatgacaa 35  Q
    |||||||||||||||||||||||||||||||||||    
T  19223588 atagagaaaagtggtcaaaatttggggtatgacaa 19223554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 29186310 - 29186344
Alignment:
Q  1 atagagaaaagtggtcaaaatttggggtatgacaa 35  Q
    |||||||||||||||||||||||||||||||||||    
T  29186310 atagagaaaagtggtcaaaatttggggtatgacaa 29186344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 20372945 - 20372978
Alignment:
Q  1 atagagaaaagtggtcaaaatttggggtatgaca 34  Q
    ||||||||||||||||||||||||||||||||||    
T  20372945 atagagaaaagtggtcaaaatttggggtatgaca 20372978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 20398667 - 20398700
Alignment:
Q  1 atagagaaaagtggtcaaaatttggggtatgaca 34  Q
    ||||||||||||||||||||||||||||||||||    
T  20398667 atagagaaaagtggtcaaaatttggggtatgaca 20398700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 24956878 - 24956911
Alignment:
Q  1 atagagaaaagtggtcaaaatttggggtatgaca 34  Q
    ||||||||||||||||||||||||||||||||||    
T  24956878 atagagaaaagtggtcaaaatttggggtatgaca 24956911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 24965341 - 24965374
Alignment:
Q  1 atagagaaaagtggtcaaaatttggggtatgaca 34  Q
    ||||||||||||||||||||||||||||||||||    
T  24965341 atagagaaaagtggtcaaaatttggggtatgaca 24965374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 31410923 - 31410889
Alignment:
Q  1 atagagaaaagtggtcaaaatttggggtatgacaa 35  Q
    ||||||||| |||||||||||||||||||||||||    
T  31410923 atagagaaatgtggtcaaaatttggggtatgacaa 31410889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 31421822 - 31421788
Alignment:
Q  1 atagagaaaagtggtcaaaatttggggtatgacaa 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  31421822 atagagaaaagtggtcaaaattttgggtatgacaa 31421788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 1728191 - 1728224
Alignment:
Q  1 atagagaaaagtggtcaaaatttggggtatgaca 34  Q
    |||||| |||||||||||||||||||||||||||    
T  1728191 atagaggaaagtggtcaaaatttggggtatgaca 1728224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 23350108 - 23350141
Alignment:
Q  1 atagagaaaagtggtcaaaatttggggtatgaca 34  Q
    |||||||||| |||||||||||||||||||||||    
T  23350108 atagagaaaaatggtcaaaatttggggtatgaca 23350141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 28843973 - 28843940
Alignment:
Q  1 atagagaaaagtggtcaaaatttggggtatgaca 34  Q
    |||||| |||||||||||||||||||||||||||    
T  28843973 atagaggaaagtggtcaaaatttggggtatgaca 28843940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 28852583 - 28852550
Alignment:
Q  1 atagagaaaagtggtcaaaatttggggtatgaca 34  Q
    |||||| |||||||||||||||||||||||||||    
T  28852583 atagaggaaagtggtcaaaatttggggtatgaca 28852550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 36
Target Start/End: Complemental strand, 29188520 - 29188491
Alignment:
Q  7 aaaagtggtcaaaatttggggtatgacaaa 36  Q
    ||||||||||||||||||||||||||||||    
T  29188520 aaaagtggtcaaaatttggggtatgacaaa 29188491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 43598078 - 43598111
Alignment:
Q  1 atagagaaaagtggtcaaaatttggggtatgaca 34  Q
    |||||| |||||||||||||||||||||||||||    
T  43598078 atagaggaaagtggtcaaaatttggggtatgaca 43598111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 43603570 - 43603603
Alignment:
Q  1 atagagaaaagtggtcaaaatttggggtatgaca 34  Q
    |||||| |||||||||||||||||||||||||||    
T  43603570 atagaggaaagtggtcaaaatttggggtatgaca 43603603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 43609062 - 43609095
Alignment:
Q  1 atagagaaaagtggtcaaaatttggggtatgaca 34  Q
    |||||| |||||||||||||||||||||||||||    
T  43609062 atagaggaaagtggtcaaaatttggggtatgaca 43609095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 40865 - 40902
Alignment:
Q  1 atagagaaaagtggtcaaaatttggggtatgacaaata 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  40865 atagagaaaagtggtcaaaatttggggtatgacaaata 40902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0111 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 33068 - 33033
Alignment:
Q  1 atagagaaaagtggtcaaaatttggggtatgacaaa 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  33068 atagagaaaagtggtcaaaatttggggtatgacaaa 33033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000007; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 8103120 - 8103155
Alignment:
Q  1 atagagaaaagtggtcaaaatttggggtatgacaaa 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  8103120 atagagaaaagtggtcaaaatttggggtatgacaaa 8103155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 10638361 - 10638327
Alignment:
Q  1 atagagaaaagtggtcaaaatttggggtatgacaa 35  Q
    |||||||||||||||||||||||||||||||||||    
T  10638361 atagagaaaagtggtcaaaatttggggtatgacaa 10638327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 12428510 - 12428544
Alignment:
Q  1 atagagaaaagtggtcaaaatttggggtatgacaa 35  Q
    |||||||||||||||||||||||||||||||||||    
T  12428510 atagagaaaagtggtcaaaatttggggtatgacaa 12428544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 21532336 - 21532370
Alignment:
Q  1 atagagaaaagtggtcaaaatttggggtatgacaa 35  Q
    |||||||||||||||||||||||||||||||||||    
T  21532336 atagagaaaagtggtcaaaatttggggtatgacaa 21532370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 27343723 - 27343757
Alignment:
Q  1 atagagaaaagtggtcaaaatttggggtatgacaa 35  Q
    |||||||||||||||||||||||||||||||||||    
T  27343723 atagagaaaagtggtcaaaatttggggtatgacaa 27343757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 8094314 - 8094347
Alignment:
Q  1 atagagaaaagtggtcaaaatttggggtatgaca 34  Q
    ||||||||||||||||||||||||||||||||||    
T  8094314 atagagaaaagtggtcaaaatttggggtatgaca 8094347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 12996509 - 12996476
Alignment:
Q  1 atagagaaaagtggtcaaaatttggggtatgaca 34  Q
    ||||||||||||||||||||||||||||||||||    
T  12996509 atagagaaaagtggtcaaaatttggggtatgaca 12996476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 52295637 - 52295604
Alignment:
Q  1 atagagaaaagtggtcaaaatttggggtatgaca 34  Q
    ||||||||||||||||||||||||||||||||||    
T  52295637 atagagaaaagtggtcaaaatttggggtatgaca 52295604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 4523712 - 4523745
Alignment:
Q  1 atagagaaaagtggtcaaaatttggggtatgaca 34  Q
    |||||| |||||||||||||||||||||||||||    
T  4523712 atagaggaaagtggtcaaaatttggggtatgaca 4523745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0497 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0497
Description:

Target: scaffold0497; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 11026 - 10992
Alignment:
Q  1 atagagaaaagtggtcaaaatttggggtatgacaa 35  Q
    |||||||||||||||||||||||||||||||||||    
T  11026 atagagaaaagtggtcaaaatttggggtatgacaa 10992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0431 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0431
Description:

Target: scaffold0431; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 172 - 138
Alignment:
Q  1 atagagaaaagtggtcaaaatttggggtatgacaa 35  Q
    |||||||||||||||||||||||||||||||||||    
T  172 atagagaaaagtggtcaaaatttggggtatgacaa 138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 15846 - 15812
Alignment:
Q  1 atagagaaaagtggtcaaaatttggggtatgacaa 35  Q
    |||||||||||||||||||||||||||||||||||    
T  15846 atagagaaaagtggtcaaaatttggggtatgacaa 15812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 121261 - 121227
Alignment:
Q  1 atagagaaaagtggtcaaaatttggggtatgacaa 35  Q
    |||||||||||||||||||||||||||||||||||    
T  121261 atagagaaaagtggtcaaaatttggggtatgacaa 121227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000003; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 17683828 - 17683862
Alignment:
Q  1 atagagaaaagtggtcaaaatttggggtatgacaa 35  Q
    |||||||||||||||||||||||||||||||||||    
T  17683828 atagagaaaagtggtcaaaatttggggtatgacaa 17683862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 17973598 - 17973564
Alignment:
Q  1 atagagaaaagtggtcaaaatttggggtatgacaa 35  Q
    |||||||||||||||||||||||||||||||||||    
T  17973598 atagagaaaagtggtcaaaatttggggtatgacaa 17973564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 26876086 - 26876120
Alignment:
Q  1 atagagaaaagtggtcaaaatttggggtatgacaa 35  Q
    |||||||||||||||||||||||||||||||||||    
T  26876086 atagagaaaagtggtcaaaatttggggtatgacaa 26876120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 30938315 - 30938281
Alignment:
Q  1 atagagaaaagtggtcaaaatttggggtatgacaa 35  Q
    |||||||||||||||||||||||||||||||||||    
T  30938315 atagagaaaagtggtcaaaatttggggtatgacaa 30938281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 17664672 - 17664705
Alignment:
Q  1 atagagaaaagtggtcaaaatttggggtatgaca 34  Q
    ||||||||||||||||||||||||||||||||||    
T  17664672 atagagaaaagtggtcaaaatttggggtatgaca 17664705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 26873636 - 26873669
Alignment:
Q  1 atagagaaaagtggtcaaaatttggggtatgaca 34  Q
    ||||||||||||||||||||||||||||||||||    
T  26873636 atagagaaaagtggtcaaaatttggggtatgaca 26873669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 1407105 - 1407139
Alignment:
Q  1 atagagaaaagtggtcaaaatttggggtatgacaa 35  Q
    |||||| ||||||||||||||||||||||||||||    
T  1407105 atagaggaaagtggtcaaaatttggggtatgacaa 1407139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 4839814 - 4839847
Alignment:
Q  1 atagagaaaagtggtcaaaatttggggtatgaca 34  Q
    ||||||||||| ||||||||||||||||||||||    
T  4839814 atagagaaaagcggtcaaaatttggggtatgaca 4839847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 39837594 - 39837627
Alignment:
Q  1 atagagaaaagtggtcaaaatttggggtatgaca 34  Q
    |||||| |||||||||||||||||||||||||||    
T  39837594 atagaggaaagtggtcaaaatttggggtatgaca 39837627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 39845637 - 39845670
Alignment:
Q  1 atagagaaaagtggtcaaaatttggggtatgaca 34  Q
    |||||| |||||||||||||||||||||||||||    
T  39845637 atagaggaaagtggtcaaaatttggggtatgaca 39845670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000003; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 12978488 - 12978454
Alignment:
Q  1 atagagaaaagtggtcaaaatttggggtatgacaa 35  Q
    |||||||||||||||||||||||||||||||||||    
T  12978488 atagagaaaagtggtcaaaatttggggtatgacaa 12978454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 4941609 - 4941642
Alignment:
Q  1 atagagaaaagtggtcaaaatttggggtatgaca 34  Q
    ||||||||||||||||||||||||||||||||||    
T  4941609 atagagaaaagtggtcaaaatttggggtatgaca 4941642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 10439970 - 10439937
Alignment:
Q  1 atagagaaaagtggtcaaaatttggggtatgaca 34  Q
    ||||||||||||||||||||||||||||||||||    
T  10439970 atagagaaaagtggtcaaaatttggggtatgaca 10439937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 18304424 - 18304457
Alignment:
Q  1 atagagaaaagtggtcaaaatttggggtatgaca 34  Q
    ||||||||||||||||||||||||||||||||||    
T  18304424 atagagaaaagtggtcaaaatttggggtatgaca 18304457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 30244808 - 30244774
Alignment:
Q  1 atagagaaaagtggtcaaaatttggggtatgacaa 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  30244808 atagagaaaagtggtcaaaatttgaggtatgacaa 30244774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 13839564 - 13839531
Alignment:
Q  1 atagagaaaagtggtcaaaatttggggtatgaca 34  Q
    |||||| |||||||||||||||||||||||||||    
T  13839564 atagaggaaagtggtcaaaatttggggtatgaca 13839531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000003; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 30508 - 30542
Alignment:
Q  1 atagagaaaagtggtcaaaatttggggtatgacaa 35  Q
    |||||||||||||||||||||||||||||||||||    
T  30508 atagagaaaagtggtcaaaatttggggtatgacaa 30542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 8197728 - 8197761
Alignment:
Q  1 atagagaaaagtggtcaaaatttggggtatgaca 34  Q
    ||||||||||||||||||||||||||||||||||    
T  8197728 atagagaaaagtggtcaaaatttggggtatgaca 8197761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 14538637 - 14538670
Alignment:
Q  1 atagagaaaagtggtcaaaatttggggtatgaca 34  Q
    ||||||||||||||||||||||||||||||||||    
T  14538637 atagagaaaagtggtcaaaatttggggtatgaca 14538670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 17628298 - 17628265
Alignment:
Q  1 atagagaaaagtggtcaaaatttggggtatgaca 34  Q
    ||||||||||||||||||||||||||||||||||    
T  17628298 atagagaaaagtggtcaaaatttggggtatgaca 17628265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 17919232 - 17919199
Alignment:
Q  1 atagagaaaagtggtcaaaatttggggtatgaca 34  Q
    ||||||||||||||||||||||||||||||||||    
T  17919232 atagagaaaagtggtcaaaatttggggtatgaca 17919199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 27341367 - 27341400
Alignment:
Q  1 atagagaaaagtggtcaaaatttggggtatgaca 34  Q
    ||||||||||||||||||||||||||||||||||    
T  27341367 atagagaaaagtggtcaaaatttggggtatgaca 27341400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 28470249 - 28470282
Alignment:
Q  1 atagagaaaagtggtcaaaatttggggtatgaca 34  Q
    ||||||||||||||||||||||||||||||||||    
T  28470249 atagagaaaagtggtcaaaatttggggtatgaca 28470282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 50824385 - 50824352
Alignment:
Q  1 atagagaaaagtggtcaaaatttggggtatgaca 34  Q
    ||||||||||||||||||||||||||||||||||    
T  50824385 atagagaaaagtggtcaaaatttggggtatgaca 50824352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 50851475 - 50851508
Alignment:
Q  1 atagagaaaagtggtcaaaatttggggtatgaca 34  Q
    ||||||||||||||||||||||||||||||||||    
T  50851475 atagagaaaagtggtcaaaatttggggtatgaca 50851508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 35
Target Start/End: Complemental strand, 18039041 - 18039010
Alignment:
Q  4 gagaaaagtggtcaaaatttggggtatgacaa 35  Q
    ||||||||||||||||||||||||||||||||    
T  18039041 gagaaaagtggtcaaaatttggggtatgacaa 18039010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 2211272 - 2211239
Alignment:
Q  1 atagagaaaagtggtcaaaatttggggtatgaca 34  Q
    ||||||||||||||||||||||| ||||||||||    
T  2211272 atagagaaaagtggtcaaaatttagggtatgaca 2211239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 8154676 - 8154709
Alignment:
Q  1 atagagaaaagtggtcaaaatttggggtatgaca 34  Q
    |||||| |||||||||||||||||||||||||||    
T  8154676 atagaggaaagtggtcaaaatttggggtatgaca 8154709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 9525466 - 9525499
Alignment:
Q  1 atagagaaaagtggtcaaaatttggggtatgaca 34  Q
    ||||||||||||| ||||||||||||||||||||    
T  9525466 atagagaaaagtgatcaaaatttggggtatgaca 9525499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 9555140 - 9555173
Alignment:
Q  1 atagagaaaagtggtcaaaatttggggtatgaca 34  Q
    ||||||||||||| ||||||||||||||||||||    
T  9555140 atagagaaaagtgatcaaaatttggggtatgaca 9555173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 184
Target Start/End: Original strand, 9668699 - 9668744
Alignment:
Q  139 ctcttcaagaacatttcggctaaaagaaatttccaacttatccaaa 184  Q
    |||||||| ||||||||||||||| ||||||||| |||| ||||||    
T  9668699 ctcttcaaaaacatttcggctaaaggaaatttccgacttgtccaaa 9668744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 17933688 - 17933655
Alignment:
Q  1 atagagaaaagtggtcaaaatttggggtatgaca 34  Q
    |||||||||| |||||||||||||||||||||||    
T  17933688 atagagaaaattggtcaaaatttggggtatgaca 17933655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 41006589 - 41006556
Alignment:
Q  1 atagagaaaagtggtcaaaatttggggtatgaca 34  Q
    |||||||||| |||||||||||||||||||||||    
T  41006589 atagagaaaaatggtcaaaatttggggtatgaca 41006556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 41015369 - 41015336
Alignment:
Q  1 atagagaaaagtggtcaaaatttggggtatgaca 34  Q
    |||||||||| |||||||||||||||||||||||    
T  41015369 atagagaaaaatggtcaaaatttggggtatgaca 41015336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 7 - 35
Target Start/End: Complemental strand, 21186774 - 21186746
Alignment:
Q  7 aaaagtggtcaaaatttggggtatgacaa 35  Q
    |||||||||||||||||||||||||||||    
T  21186774 aaaagtggtcaaaatttggggtatgacaa 21186746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000003; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 14582958 - 14582924
Alignment:
Q  1 atagagaaaagtggtcaaaatttggggtatgacaa 35  Q
    |||||||||||||||||||||||||||||||||||    
T  14582958 atagagaaaagtggtcaaaatttggggtatgacaa 14582924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 15953104 - 15953138
Alignment:
Q  1 atagagaaaagtggtcaaaatttggggtatgacaa 35  Q
    |||||||||||||||||||||||||||||||||||    
T  15953104 atagagaaaagtggtcaaaatttggggtatgacaa 15953138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 25483634 - 25483600
Alignment:
Q  1 atagagaaaagtggtcaaaatttggggtatgacaa 35  Q
    |||||||||||||||||||||||||||||||||||    
T  25483634 atagagaaaagtggtcaaaatttggggtatgacaa 25483600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 25491240 - 25491206
Alignment:
Q  1 atagagaaaagtggtcaaaatttggggtatgacaa 35  Q
    |||||||||||||||||||||||||||||||||||    
T  25491240 atagagaaaagtggtcaaaatttggggtatgacaa 25491206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 42249487 - 42249521
Alignment:
Q  1 atagagaaaagtggtcaaaatttggggtatgacaa 35  Q
    |||||||||||||||||||||||||||||||||||    
T  42249487 atagagaaaagtggtcaaaatttggggtatgacaa 42249521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 15944589 - 15944622
Alignment:
Q  1 atagagaaaagtggtcaaaatttggggtatgaca 34  Q
    ||||||||||||||||||||||||||||||||||    
T  15944589 atagagaaaagtggtcaaaatttggggtatgaca 15944622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 17687430 - 17687463
Alignment:
Q  1 atagagaaaagtggtcaaaatttggggtatgaca 34  Q
    ||||||||||||||||||||||||||||||||||    
T  17687430 atagagaaaagtggtcaaaatttggggtatgaca 17687463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 20372345 - 20372378
Alignment:
Q  1 atagagaaaagtggtcaaaatttggggtatgaca 34  Q
    ||||||||||||||||||||||||||||||||||    
T  20372345 atagagaaaagtggtcaaaatttggggtatgaca 20372378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 20621551 - 20621518
Alignment:
Q  1 atagagaaaagtggtcaaaatttggggtatgaca 34  Q
    ||||||||||||||||||||||||||||||||||    
T  20621551 atagagaaaagtggtcaaaatttggggtatgaca 20621518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 35138626 - 35138593
Alignment:
Q  1 atagagaaaagtggtcaaaatttggggtatgaca 34  Q
    ||||||||||||||||||||||||||||||||||    
T  35138626 atagagaaaagtggtcaaaatttggggtatgaca 35138593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 35146962 - 35146929
Alignment:
Q  1 atagagaaaagtggtcaaaatttggggtatgaca 34  Q
    ||||||||||||||||||||||||||||||||||    
T  35146962 atagagaaaagtggtcaaaatttggggtatgaca 35146929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 41233876 - 41233909
Alignment:
Q  1 atagagaaaagtggtcaaaatttggggtatgaca 34  Q
    ||||||||||||||||||||||||||||||||||    
T  41233876 atagagaaaagtggtcaaaatttggggtatgaca 41233909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 38168389 - 38168423
Alignment:
Q  1 atagagaaaagtggtcaaaatttggggtatgacaa 35  Q
    ||||||||||||||||||||||||| |||||||||    
T  38168389 atagagaaaagtggtcaaaatttggagtatgacaa 38168423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 44372738 - 44372704
Alignment:
Q  1 atagagaaaagtggtcaaaatttggggtatgacaa 35  Q
    ||||| |||||||||||||||||||||||||||||    
T  44372738 atagaaaaaagtggtcaaaatttggggtatgacaa 44372704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 44388649 - 44388615
Alignment:
Q  1 atagagaaaagtggtcaaaatttggggtatgacaa 35  Q
    ||||| |||||||||||||||||||||||||||||    
T  44388649 atagaaaaaagtggtcaaaatttggggtatgacaa 44388615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 34
Target Start/End: Complemental strand, 24285725 - 24285696
Alignment:
Q  5 agaaaagtggtcaaaatttggggtatgaca 34  Q
    ||||||||||||||||||||||||||||||    
T  24285725 agaaaagtggtcaaaatttggggtatgaca 24285696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 34
Target Start/End: Complemental strand, 24292401 - 24292372
Alignment:
Q  5 agaaaagtggtcaaaatttggggtatgaca 34  Q
    ||||||||||||||||||||||||||||||    
T  24292401 agaaaagtggtcaaaatttggggtatgaca 24292372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 26903365 - 26903402
Alignment:
Q  1 atagagaaaagtggtcaaaatttggggtatgacaaata 38  Q
    ||||||||||||||||||||||| |||||||| |||||    
T  26903365 atagagaaaagtggtcaaaatttagggtatgataaata 26903402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 34070636 - 34070669
Alignment:
Q  1 atagagaaaagtggtcaaaatttggggtatgaca 34  Q
    ||||||||||||| ||||||||||||||||||||    
T  34070636 atagagaaaagtgatcaaaatttggggtatgaca 34070669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 42565961 - 42565994
Alignment:
Q  1 atagagaaaagtggtcaaaatttggggtatgaca 34  Q
    |||||| |||||||||||||||||||||||||||    
T  42565961 atagaggaaagtggtcaaaatttggggtatgaca 42565994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 42574585 - 42574618
Alignment:
Q  1 atagagaaaagtggtcaaaatttggggtatgaca 34  Q
    |||||| |||||||||||||||||||||||||||    
T  42574585 atagaggaaagtggtcaaaatttggggtatgaca 42574618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 7 - 35
Target Start/End: Original strand, 21322848 - 21322876
Alignment:
Q  7 aaaagtggtcaaaatttggggtatgacaa 35  Q
    |||||||||||||||||||||||||||||    
T  21322848 aaaagtggtcaaaatttggggtatgacaa 21322876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000003; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 35104096 - 35104130
Alignment:
Q  1 atagagaaaagtggtcaaaatttggggtatgacaa 35  Q
    |||||||||||||||||||||||||||||||||||    
T  35104096 atagagaaaagtggtcaaaatttggggtatgacaa 35104130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 21498930 - 21498963
Alignment:
Q  1 atagagaaaagtggtcaaaatttggggtatgaca 34  Q
    ||||||||||||||||||||||||||||||||||    
T  21498930 atagagaaaagtggtcaaaatttggggtatgaca 21498963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 31539987 - 31539954
Alignment:
Q  1 atagagaaaagtggtcaaaatttggggtatgaca 34  Q
    ||||||||||||||||||||||||||||||||||    
T  31539987 atagagaaaagtggtcaaaatttggggtatgaca 31539954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 31548556 - 31548523
Alignment:
Q  1 atagagaaaagtggtcaaaatttggggtatgaca 34  Q
    ||||||||||||||||||||||||||||||||||    
T  31548556 atagagaaaagtggtcaaaatttggggtatgaca 31548523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 35
Target Start/End: Original strand, 44320227 - 44320258
Alignment:
Q  4 gagaaaagtggtcaaaatttggggtatgacaa 35  Q
    ||||||||||||||||||||||||||||||||    
T  44320227 gagaaaagtggtcaaaatttggggtatgacaa 44320258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 20314059 - 20314093
Alignment:
Q  1 atagagaaaagtggtcaaaatttggggtatgacaa 35  Q
    ||||| |||||||||||||||||||||||||||||    
T  20314059 atagaaaaaagtggtcaaaatttggggtatgacaa 20314093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 3432922 - 3432955
Alignment:
Q  1 atagagaaaagtggtcaaaatttggggtatgaca 34  Q
    |||||| |||||||||||||||||||||||||||    
T  3432922 atagaggaaagtggtcaaaatttggggtatgaca 3432955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 29221520 - 29221553
Alignment:
Q  1 atagagaaaagtggtcaaaatttggggtatgaca 34  Q
    |||||||||||| |||||||||||||||||||||    
T  29221520 atagagaaaagtagtcaaaatttggggtatgaca 29221553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 32137786 - 32137823
Alignment:
Q  1 atagagaaaagtggtcaaaatttggggtatgacaaata 38  Q
    ||||||||||||| ||||||||||||||| ||||||||    
T  32137786 atagagaaaagtgatcaaaatttggggtaagacaaata 32137823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 7 - 35
Target Start/End: Complemental strand, 22646733 - 22646705
Alignment:
Q  7 aaaagtggtcaaaatttggggtatgacaa 35  Q
    |||||||||||||||||||||||||||||    
T  22646733 aaaagtggtcaaaatttggggtatgacaa 22646705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 4 - 32
Target Start/End: Complemental strand, 28457584 - 28457556
Alignment:
Q  4 gagaaaagtggtcaaaatttggggtatga 32  Q
    |||||||||||||||||||||||||||||    
T  28457584 gagaaaagtggtcaaaatttggggtatga 28457556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0991 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0991
Description:

Target: scaffold0991; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 405 - 438
Alignment:
Q  1 atagagaaaagtggtcaaaatttggggtatgaca 34  Q
    ||||||||||||||||||||||||||||||||||    
T  405 atagagaaaagtggtcaaaatttggggtatgaca 438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0156 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0156
Description:

Target: scaffold0156; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 35388 - 35421
Alignment:
Q  1 atagagaaaagtggtcaaaatttggggtatgaca 34  Q
    ||||||||||||||||||||||||||||||||||    
T  35388 atagagaaaagtggtcaaaatttggggtatgaca 35421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 7661 - 7694
Alignment:
Q  1 atagagaaaagtggtcaaaatttggggtatgaca 34  Q
    ||||||||||||||||||||||||||||||||||    
T  7661 atagagaaaagtggtcaaaatttggggtatgaca 7694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 23497 - 23464
Alignment:
Q  1 atagagaaaagtggtcaaaatttggggtatgaca 34  Q
    ||||||||||||||||||||||||||||||||||    
T  23497 atagagaaaagtggtcaaaatttggggtatgaca 23464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 192561 - 192528
Alignment:
Q  1 atagagaaaagtggtcaaaatttggggtatgaca 34  Q
    ||||||||||||||||||||||||||||||||||    
T  192561 atagagaaaagtggtcaaaatttggggtatgaca 192528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0209 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0209
Description:

Target: scaffold0209; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 116 - 150
Alignment:
Q  1 atagagaaaagtggtcaaaatttggggtatgacaa 35  Q
    |||||| ||||||||||||||||||||||||||||    
T  116 atagaggaaagtggtcaaaatttggggtatgacaa 150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0863 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0863
Description:

Target: scaffold0863; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 34
Target Start/End: Original strand, 408 - 437
Alignment:
Q  5 agaaaagtggtcaaaatttggggtatgaca 34  Q
    ||||||||||||||||||||||||||||||    
T  408 agaaaagtggtcaaaatttggggtatgaca 437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0222 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0222
Description:

Target: scaffold0222; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 34
Target Start/End: Original strand, 20518 - 20547
Alignment:
Q  5 agaaaagtggtcaaaatttggggtatgaca 34  Q
    ||||||||||||||||||||||||||||||    
T  20518 agaaaagtggtcaaaatttggggtatgaca 20547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 81818 - 81851
Alignment:
Q  1 atagagaaaagtggtcaaaatttggggtatgaca 34  Q
    ||||||||||||||||||||||| ||||||||||    
T  81818 atagagaaaagtggtcaaaatttagggtatgaca 81851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 65710 - 65743
Alignment:
Q  1 atagagaaaagtggtcaaaatttggggtatgaca 34  Q
    ||||||||||||||||||||||| ||||||||||    
T  65710 atagagaaaagtggtcaaaatttagggtatgaca 65743  T

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Target: scaffold1487 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: scaffold1487
Description:

Target: scaffold1487; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 775 - 811
Alignment:
Q  1 atagagaaaagtggtcaaaattt-ggggtatgacaaa 36  Q
    ||||||||||||||||||||||| |||||||||||||    
T  775 atagagaaaagtggtcaaaatttgggggtatgacaaa 811  T

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Target: scaffold0391 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: scaffold0391
Description:

Target: scaffold0391; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 8 - 36
Target Start/End: Original strand, 2 - 30
Alignment:
Q  8 aaagtggtcaaaatttggggtatgacaaa 36  Q
    |||||||||||||||||||||||||||||    
T  2 aaagtggtcaaaatttggggtatgacaaa 30  T

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