View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18161_low_53 (Length: 218)
Name: NF18161_low_53
Description: NF18161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18161_low_53 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 33641767 - 33641970
Alignment:
| Q |
1 |
tgttgaagctatggtatccttattcaaagcactgtccatgactccaagaactgaagttaaagaagaatttgaatcatcgaggaaaagaaagtttgaggaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33641767 |
tgttgaagctatggtatccttattcaaagcactgtccatgactccaagaactgaagttaaagaagaatttgaatcatcgaggaaaagaaagtttgaggaa |
33641866 |
T |
|
| Q |
101 |
ccatttaccgaagaattcttcaaggatcaaacaaatttagagaaaaggaaatccacctttgatacaaagcctcccctagagatcatgtttccttcaaata |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
33641867 |
ccatttaccgaagaattcttcaaggatcaaacaaatttagagaaaaggaaatccacctttgatacaaagcctcccctagagaccatgtttccttcaaata |
33641966 |
T |
|
| Q |
201 |
attg |
204 |
Q |
| |
|
|||| |
|
|
| T |
33641967 |
attg |
33641970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University