View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18161_low_8 (Length: 535)
Name: NF18161_low_8
Description: NF18161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18161_low_8 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-121; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 276 - 535
Target Start/End: Original strand, 31584392 - 31584651
Alignment:
| Q |
276 |
aattatcttctctctttatcaagagatatgaaaaggattgaaaaggattgaaggatgtttgaatcaagagggtccaaatccatcgtgccaagtagcaatt |
375 |
Q |
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| T |
31584392 |
aattatcttctctctttatcaagagatataaaaaggattgaaaaggattgaaggatgtttgaatcaagagggtccaaatccgtcgtgccaagtagcaatt |
31584491 |
T |
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| Q |
376 |
gcgctagtttcatcatatttttcataaggcaaaatatattnnnnnnnnnctcttaagccaaacatgaagtaagcaggaaaacaaaacaaagttacaatga |
475 |
Q |
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| T |
31584492 |
gcgctagtttcatcatatttttcataaggcaaaatatattaaaaaaaaactcttaagccaaacatgaagtaagcaggaaaacaaaacaaagttacaatga |
31584591 |
T |
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| Q |
476 |
tacaaacttaagtccaaaacaaatacaccccatcacaacaaaatcagagacagtcttgta |
535 |
Q |
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| T |
31584592 |
tacaaacttaagtccaaaactaatacaccccatcacaacaaaatcagagacagtcttgta |
31584651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 6 - 210
Target Start/End: Original strand, 31584116 - 31584319
Alignment:
| Q |
6 |
atatatgtaaacaatacttatatttctatcatatcatgcaagaatatatgtacgtgtatgtgtgtaatttaagtaatattgtaacnnnnnnnnggnnnnn |
105 |
Q |
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| T |
31584116 |
atatatctaaacaatacttctatttatatcttatcatgcaagaatatatgtacgtgtatgtgtgtaatttaagtaatattgtaactttttctcggaaaaa |
31584215 |
T |
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| Q |
106 |
nngtattgcaaattttaaatagataacacttatacgcatgttccattatggccagcccaaacattcaaactatttaacatttggatcatcccaattcgaa |
205 |
Q |
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| T |
31584216 |
aa-tattgcaaattttaaatagataacacttgtacgcatgttccattatcgccagcccaaacattcaaactatttaacatttggatcatcccaattcgaa |
31584314 |
T |
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| Q |
206 |
catcc |
210 |
Q |
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| T |
31584315 |
catcc |
31584319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 41 - 85
Target Start/End: Original strand, 31582281 - 31582325
Alignment:
| Q |
41 |
atgcaagaatatatgtacgtgtatgtgtgtaatttaagtaatatt |
85 |
Q |
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| T |
31582281 |
atgcatgaatatgtgtacgtgtatgtgtgtagtttaagtaatatt |
31582325 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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