View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18161_low_9 (Length: 512)

Name: NF18161_low_9
Description: NF18161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18161_low_9
NF18161_low_9
[»] chr3 (12 HSPs)
chr3 (154-430)||(24369920-24370197)
chr3 (13-317)||(24362479-24362785)
chr3 (167-334)||(24358699-24358866)
chr3 (129-317)||(24355617-24355800)
chr3 (159-313)||(24364387-24364541)
chr3 (331-430)||(24358564-24358664)
chr3 (331-430)||(24364627-24364727)
chr3 (129-269)||(24346558-24346698)
chr3 (358-430)||(24354902-24354974)
chr3 (156-305)||(24352226-24352375)
chr3 (13-68)||(24346778-24346833)
chr3 (19-67)||(24355886-24355934)


Alignment Details
Target: chr3 (Bit Score: 226; Significance: 1e-124; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 154 - 430
Target Start/End: Complemental strand, 24370197 - 24369920
Alignment:
Q  154 ttctaccagatgattaggctttatgagaattgtgaaaaaaggattgcatgagatgaaattttgagcaacttcctgagctctaacatcctttggccaattg 253  Q
    ||||||||||| | | ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  24370197 ttctaccagattaattggcttgatgagaattgtgaaaaatggattgcatgagatgaaattttgagcaacttcctgagctctaacatcctttggccaattc 24370098  T
Q  254 attgatgaagttcttttagaagtcttctcatcatcacctgcatatatgtgtgaaatgtaaaacatcgaagaaactcttgaaaagaaaatcaagaaaccaa 353  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24370097 attgatgaagttcttttagtagtcttctcatcatcacctgcatatatgtgtgaaatgtaaaacatcgaagaaactcttgaaaagaaaatcaagaaaccaa 24369998  T
Q  354 acc-aacctcgaactttcttatgtggtcgaggagaaacgaaaggcgatctttgtctagccttcttccgattaagccat 430  Q
    ||| ||||| ||||||||||||||||||||| |||||| ||||| |||||||||||||||||||||||||||||||||    
T  24369997 accaaaccttgaactttcttatgtggtcgagaagaaacaaaaggtgatctttgtctagccttcttccgattaagccat 24369920  T

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Target: chr3; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 13 - 317
Target Start/End: Complemental strand, 24362785 - 24362479
Alignment:
Q  13 cacagacttctctttgttctcaataaccccttctaaatttagtacacactgcatagaataaatagtat--tatcggtcattatacatagcactgcatgaa 110  Q
    |||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||  ||||| ||||||||||||||||||||||||    
T  24362785 cacatacttctctttgttctcaataaccccttctaaatttggtacacactgcatagaataaatagtatattatcgatcattatacatagcactgcatgaa 24362686  T
Q  111 tgaattagtgcaaatgttttgtgtttgaccttaccagccgagtttctaccagatgattaggctttatgagaattgtgaaaaaaggattgcatgagatgaa 210  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  24362685 tgaattaatgcaaatgttttgtgtttgaccttaccagccgagtttctaccagatgattaggctttatgagaattgtgaaaaaaggattgcttgagatgaa 24362586  T
Q  211 attttgagcaacttcctgagctctaacatcctttggccaattgattgatgaagttcttttagaagtcttctcatcatcacctgcatatatgtgtgaaatg 310  Q
     |||  ||| |||||  |||||||| |  || | |||||||| | ||||| |||||||| || |||||||| |   |||||||||||||||||||||||     
T  24362585 ttttgcagctacttctcgagctctagctcccataggccaattcaatgatgtagttctttcagtagtcttcttaatctcacctgcatatatgtgtgaaata 24362486  T
Q  311 taaaaca 317  Q
    |||||||    
T  24362485 taaaaca 24362479  T

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Target: chr3; HSP #3
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 167 - 334
Target Start/End: Complemental strand, 24358866 - 24358699
Alignment:
Q  167 ttaggctttatgagaattgtgaaaaaaggattgcatgagatgaaattttgagcaacttcctgagctctaacatcctttggccaattgattgatgaagttc 266  Q
    ||||| |||||||||||||||||||||||||||  |||||||||||||||||| |||| ||||||||||||||||||||||||||| |||||||||||||    
T  24358866 ttaggttttatgagaattgtgaaaaaaggattgtttgagatgaaattttgagctactttctgagctctaacatcctttggccaatttattgatgaagttc 24358767  T
Q  267 ttttagaagtcttctcatcatcacctgcatatatgtgtgaaatgtaaaacatcgaagaaactcttgaa 334  Q
    |||||| |||||||||||||||||||||||||||| ||| |||||||| ||  |||||||||||||||    
T  24358766 ttttagtagtcttctcatcatcacctgcatatatgcgtgcaatgtaaatcaaagaagaaactcttgaa 24358699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 129 - 317
Target Start/End: Complemental strand, 24355800 - 24355617
Alignment:
Q  129 ttgtgtttgaccttaccagccgagtttctaccagatgattaggctttatgagaattgtgaaaaaaggattgcatgagatgaaattttgagcaacttcctg 228  Q
    ||||||||||||||||||||||| || |||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  24355800 ttgtgtttgaccttaccagccgatttgctaccaaatgattaggcttgatgagaattgtgaaaaaaggattgcatgagatgaaattttgagctacttcctg 24355701  T
Q  229 agctctaacatcct-ttggccaattgattgatgaagttcttttagaagtcttctcatcatcacctgcatatatgtgtgaaatgtaaaaca 317  Q
    ||||||| | |||| ||||||||     ||||||||||||||||| ||| |||| |   ||||||||||||||||||| ||| |||||||    
T  24355700 agctctagc-tcctcttggccaa-----tgatgaagttcttttagcagttttcttaatctcacctgcatatatgtgtggaatataaaaca 24355617  T

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Target: chr3; HSP #5
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 159 - 313
Target Start/End: Original strand, 24364387 - 24364541
Alignment:
Q  159 ccagatgattaggctttatgagaattgtgaaaaaaggattgcatgagatgaaattttgagcaacttcctgagctctaacatcctttggccaattgattga 258  Q
    |||||| ||| || |||||||||| ||| || ||||||||||||||||||||||||||||| ||||||||||||||| ||| ||| ||||| || |||||    
T  24364387 ccagatcattcgggtttatgagaactgtaaagaaaggattgcatgagatgaaattttgagctacttcctgagctctagcattcttcggccagtttattga 24364486  T
Q  259 tgaagttcttttagaagtcttctcatcatcacctgcatatatgtgtgaaatgtaa 313  Q
    |||||||||||||| ||||||||||| ||| |||||||||||||||| |||||||    
T  24364487 tgaagttcttttagtagtcttctcatgatctcctgcatatatgtgtgcaatgtaa 24364541  T

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Target: chr3; HSP #6
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 331 - 430
Target Start/End: Complemental strand, 24358664 - 24358564
Alignment:
Q  331 tgaaaagaaaatcaagaaaccaaaccaa-cctcgaactttcttatgtggtcgaggagaaacgaaaggcgatctttgtctagccttcttccgattaagcca 429  Q
    |||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||||||| |||||||||||| |||||||||    
T  24358664 tgaaaagaaaatcaagaaaccaaaccaaacctcgaacttttttatgtggtcgaggagaaacgaaaggtgatctttgtttagccttcttccaattaagcca 24358565  T
Q  430 t 430  Q
    |    
T  24358564 t 24358564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 331 - 430
Target Start/End: Original strand, 24364627 - 24364727
Alignment:
Q  331 tgaaaagaaaatcaagaaaccaaaccaa-cctcgaactttcttatgtggtcgaggagaaacgaaaggcgatctttgtctagccttcttccgattaagcca 429  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||  ||||| ||||||||||||||||||||||||||||||||    
T  24364627 tgaaaagaaaatcaagaaaccaaaccaaacctcgaactttcttatgtggtcgagtagaaataaaaggtgatctttgtctagccttcttccgattaagcca 24364726  T
Q  430 t 430  Q
    |    
T  24364727 t 24364727  T

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Target: chr3; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 129 - 269
Target Start/End: Complemental strand, 24346698 - 24346558
Alignment:
Q  129 ttgtgtttgaccttaccagccgagtttctaccagatgattaggctttatgagaattgtgaaaaaaggattgcatgagatgaaattttgagcaacttcctg 228  Q
    |||||||| | ||||||| |||| ||||| | |||||| |||| |||||||||||||||||||||||||||  ||||||||| |||  ||| ||||||||    
T  24346698 ttgtgtttaatcttaccacccgattttctgctagatgagtagggtttatgagaattgtgaaaaaaggattggttgagatgaattttaaagctacttcctg 24346599  T
Q  229 agctctaacatcctttggccaattgattgatgaagttcttt 269  Q
    ||||||| |  |||||||||||||   ||||| ||||||||    
T  24346598 agctctagctccctttggccaattccatgatgtagttcttt 24346558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 358 - 430
Target Start/End: Complemental strand, 24354974 - 24354902
Alignment:
Q  358 acctcgaactttcttatgtggtcgaggagaaacgaaaggcgatctttgtctagccttcttccgattaagccat 430  Q
    ||||| |||||||||||| |||||||||||||||||||| |||||||||||||| |||||| |||||||||||    
T  24354974 acctctaactttcttatgaggtcgaggagaaacgaaaggtgatctttgtctagcattcttctgattaagccat 24354902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 156 - 305
Target Start/End: Complemental strand, 24352375 - 24352226
Alignment:
Q  156 ctaccagatgattaggctttatgagaattgtgaaaaaaggattgcatgagatgaaattttgagcaacttcctgagctctaacatcctttggccaattgat 255  Q
    |||||||||||||||||   ||||||||||||||||||||||||| |||| |||| |||  ||| ||||||| | ||||| |    |||| || ||| |     
T  24352375 ctaccagatgattaggcagaatgagaattgtgaaaaaaggattgcttgaggtgaattttgcagctacttcctcaactctagctctatttgaccgattcaa 24352276  T
Q  256 tgatgaagttcttttagaagtcttctcatcatcacctgcatatatgtgtg 305  Q
     |||||||||||||||| | ||||||  |  |||||||||||||||||||    
T  24352275 ggatgaagttcttttagtactcttcttgttctcacctgcatatatgtgtg 24352226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 68
Target Start/End: Complemental strand, 24346833 - 24346778
Alignment:
Q  13 cacagacttctctttgttctcaataaccccttctaaatttagtacacactgcatag 68  Q
    |||| |||| |||||||||||||||||||| | |||| || |||||||||||||||    
T  24346833 cacatacttttctttgttctcaataaccccatttaaagttggtacacactgcatag 24346778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 67
Target Start/End: Complemental strand, 24355934 - 24355886
Alignment:
Q  19 cttctctttgttctcaataaccccttctaaatttagtacacactgcata 67  Q
    ||||||||||||||||||||||||||  |||||| |||||  |||||||    
T  24355934 cttctctttgttctcaataacccctttaaaatttggtacattctgcata 24355886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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