View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18162_high_10 (Length: 450)

Name: NF18162_high_10
Description: NF18162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18162_high_10
NF18162_high_10
[»] chr7 (30 HSPs)
chr7 (1-450)||(38701402-38701837)
chr7 (199-327)||(27311776-27311902)
chr7 (227-327)||(42971643-42971743)
chr7 (245-348)||(40591024-40591128)
chr7 (231-301)||(42691095-42691165)
chr7 (256-333)||(22715810-22715887)
chr7 (229-326)||(37685191-37685286)
chr7 (226-299)||(43375696-43375769)
chr7 (245-333)||(32204751-32204839)
chr7 (281-333)||(33957475-33957527)
chr7 (228-326)||(11369056-11369154)
chr7 (235-305)||(19699857-19699927)
chr7 (245-307)||(36436046-36436108)
chr7 (237-326)||(2628437-2628526)
chr7 (229-298)||(30061171-30061240)
chr7 (273-333)||(43279245-43279304)
chr7 (275-329)||(23021207-23021259)
chr7 (230-300)||(18867954-18868024)
chr7 (228-302)||(41851267-41851341)
chr7 (235-300)||(16876743-16876808)
chr7 (235-300)||(23185929-23185994)
chr7 (260-333)||(43368480-43368553)
chr7 (235-300)||(46425344-46425409)
chr7 (246-326)||(685001-685081)
chr7 (265-333)||(19495138-19495206)
chr7 (235-300)||(34328106-34328169)
chr7 (267-301)||(48379482-48379516)
chr7 (226-303)||(17248718-17248795)
chr7 (279-326)||(9488770-9488818)
chr7 (236-333)||(26825466-26825559)
[»] chr8 (31 HSPs)
chr8 (244-375)||(44132824-44132954)
chr8 (237-373)||(1898050-1898187)
chr8 (274-375)||(15135964-15136065)
chr8 (227-342)||(226330-226444)
chr8 (227-342)||(702743-702857)
chr8 (227-342)||(739953-740067)
chr8 (227-342)||(863848-863962)
chr8 (233-307)||(12964327-12964401)
chr8 (259-333)||(26295413-26295487)
chr8 (259-333)||(26308670-26308744)
chr8 (247-342)||(35910591-35910685)
chr8 (259-333)||(26342744-26342817)
chr8 (233-307)||(28008133-28008207)
chr8 (233-307)||(28065436-28065510)
chr8 (229-333)||(33681268-33681370)
chr8 (260-333)||(20896181-20896254)
chr8 (265-352)||(4834944-4835032)
chr8 (228-307)||(41951176-41951255)
chr8 (233-373)||(38646761-38646902)
chr8 (229-326)||(22786539-22786635)
chr8 (228-373)||(6473922-6474064)
chr8 (237-299)||(25358099-25358161)
chr8 (237-299)||(25494386-25494448)
chr8 (255-301)||(42127209-42127255)
chr8 (237-302)||(25391137-25391202)
chr8 (247-307)||(15682641-15682701)
chr8 (244-343)||(33445788-33445887)
chr8 (235-299)||(33938620-33938684)
chr8 (245-325)||(41649972-41650052)
chr8 (279-329)||(10968540-10968590)
chr8 (237-299)||(25677453-25677515)
[»] chr4 (28 HSPs)
chr4 (244-375)||(50041765-50041895)
chr4 (244-375)||(50048987-50049117)
chr4 (226-333)||(36498593-36498700)
chr4 (234-333)||(52198346-52198445)
chr4 (226-375)||(34765078-34765228)
chr4 (228-341)||(44015397-44015511)
chr4 (247-325)||(33913960-33914036)
chr4 (236-326)||(29544163-29544253)
chr4 (227-298)||(54582139-54582209)
chr4 (260-326)||(5052112-5052178)
chr4 (237-326)||(52673199-52673288)
chr4 (265-326)||(46079341-46079402)
chr4 (265-329)||(19473049-19473113)
chr4 (241-330)||(32354993-32355078)
chr4 (227-325)||(29724351-29724449)
chr4 (228-302)||(47907271-47907345)
chr4 (260-330)||(30643590-30643659)
chr4 (267-333)||(31455888-31455954)
chr4 (236-302)||(40202273-40202339)
chr4 (227-308)||(53363691-53363770)
chr4 (265-326)||(23332134-23332195)
chr4 (265-333)||(1800884-1800952)
chr4 (228-307)||(888700-888779)
chr4 (228-333)||(1331002-1331108)
chr4 (279-326)||(29693237-29693284)
chr4 (229-326)||(11077862-11077959)
chr4 (279-307)||(27841089-27841117)
chr4 (261-329)||(31203345-31203413)
[»] chr6 (24 HSPs)
chr6 (226-374)||(24226048-24226199)
chr6 (228-347)||(6793486-6793606)
chr6 (233-333)||(26847137-26847237)
chr6 (258-333)||(512765-512840)
chr6 (246-327)||(32267018-32267099)
chr6 (245-304)||(28067321-28067380)
chr6 (232-333)||(8585698-8585799)
chr6 (237-298)||(33906583-33906644)
chr6 (273-333)||(457686-457746)
chr6 (228-324)||(6139310-6139406)
chr6 (261-356)||(31175973-31176069)
chr6 (269-329)||(28729977-28730037)
chr6 (265-343)||(28963573-28963652)
chr6 (237-325)||(3037376-3037462)
chr6 (269-329)||(28720463-28720523)
chr6 (208-333)||(31196563-31196690)
chr6 (230-315)||(4870499-4870584)
chr6 (235-300)||(9928260-9928325)
chr6 (234-307)||(9976976-9977049)
chr6 (227-327)||(167182-167282)
chr6 (227-301)||(10349143-10349216)
chr6 (235-300)||(22469698-22469763)
chr6 (243-303)||(423123-423183)
chr6 (237-300)||(31743861-31743922)
[»] chr5 (21 HSPs)
chr5 (231-373)||(3622155-3622298)
chr5 (226-333)||(3622321-3622428)
chr5 (235-329)||(17250466-17250559)
chr5 (260-333)||(33953152-33953225)
chr5 (231-327)||(19824579-19824675)
chr5 (267-326)||(34928825-34928884)
chr5 (227-333)||(22029844-22029950)
chr5 (219-327)||(14281809-14281918)
chr5 (255-323)||(9956626-9956694)
chr5 (256-305)||(37484836-37484885)
chr5 (226-289)||(3622075-3622138)
chr5 (256-373)||(10519703-10519820)
chr5 (267-333)||(33922856-33922922)
chr5 (228-333)||(25468138-25468243)
chr5 (237-333)||(8230772-8230867)
chr5 (279-316)||(18623597-18623634)
chr5 (279-334)||(17138556-17138611)
chr5 (279-326)||(22658870-22658917)
chr5 (229-320)||(28975557-28975647)
chr5 (265-324)||(42321089-42321148)
chr5 (235-300)||(37515589-37515654)
[»] chr1 (34 HSPs)
chr1 (223-351)||(4213815-4213944)
chr1 (219-333)||(46325585-46325698)
chr1 (231-343)||(3950278-3950393)
chr1 (227-333)||(19431384-19431490)
chr1 (236-333)||(11872182-11872279)
chr1 (214-333)||(46325393-46325509)
chr1 (231-329)||(49315732-49315830)
chr1 (228-299)||(7537011-7537082)
chr1 (236-333)||(17368390-17368487)
chr1 (229-333)||(44448492-44448594)
chr1 (237-326)||(48914986-48915075)
chr1 (237-326)||(48915377-48915466)
chr1 (228-333)||(26056779-26056887)
chr1 (226-301)||(31108760-31108835)
chr1 (236-326)||(24671156-24671246)
chr1 (279-333)||(34430054-34430108)
chr1 (237-315)||(48915187-48915265)
chr1 (249-290)||(4347451-4347492)
chr1 (269-325)||(49177428-49177483)
chr1 (236-299)||(37719044-37719107)
chr1 (229-300)||(51748545-51748616)
chr1 (236-326)||(19456311-19456401)
chr1 (236-326)||(26478562-26478652)
chr1 (255-301)||(33939622-33939668)
chr1 (235-300)||(27032326-27032391)
chr1 (235-300)||(27907702-27907767)
chr1 (235-300)||(48843375-48843440)
chr1 (279-315)||(15106251-15106287)
chr1 (227-295)||(49177236-49177304)
chr1 (238-320)||(5398029-5398111)
chr1 (312-372)||(4899904-4899964)
chr1 (279-343)||(45781221-45781286)
chr1 (267-319)||(17923857-17923909)
chr1 (228-276)||(42100373-42100421)
[»] chr2 (24 HSPs)
chr2 (228-348)||(28640118-28640239)
chr2 (228-375)||(21835978-21836124)
chr2 (227-326)||(32832594-32832693)
chr2 (201-307)||(1208582-1208687)
chr2 (237-326)||(23395934-23396023)
chr2 (228-333)||(40204721-40204826)
chr2 (220-287)||(14818692-14818759)
chr2 (231-333)||(13772778-13772880)
chr2 (273-326)||(6752075-6752128)
chr2 (265-326)||(39729015-39729076)
chr2 (265-326)||(41069674-41069735)
chr2 (228-299)||(5455844-5455915)
chr2 (260-346)||(8209317-8209404)
chr2 (236-326)||(11226146-11226236)
chr2 (214-306)||(8044257-8044350)
chr2 (235-300)||(15141879-15141944)
chr2 (235-300)||(3496805-3496870)
chr2 (233-302)||(21100002-21100071)
chr2 (228-297)||(862475-862544)
chr2 (238-315)||(36562752-36562829)
chr2 (271-328)||(38529879-38529936)
chr2 (271-307)||(7261192-7261228)
chr2 (229-329)||(13477687-13477787)
chr2 (278-334)||(38790513-38790568)
[»] chr3 (22 HSPs)
chr3 (237-333)||(34305789-34305884)
chr3 (236-326)||(10688608-10688698)
chr3 (227-301)||(52404684-52404758)
chr3 (260-333)||(16013502-16013575)
chr3 (267-326)||(39485471-39485530)
chr3 (237-307)||(8114301-8114371)
chr3 (235-300)||(39972991-39973056)
chr3 (235-300)||(39994190-39994255)
chr3 (231-314)||(42681849-42681930)
chr3 (232-307)||(30240864-30240939)
chr3 (235-300)||(4037140-4037205)
chr3 (235-300)||(11233505-11233570)
chr3 (243-284)||(42999162-42999203)
chr3 (235-300)||(49279488-49279553)
chr3 (232-328)||(16278768-16278864)
chr3 (273-308)||(40902315-40902350)
chr3 (229-283)||(782244-782298)
chr3 (257-303)||(20345072-20345118)
chr3 (243-296)||(27825049-27825102)
chr3 (273-326)||(47548873-47548926)
chr3 (265-301)||(35054932-35054968)
chr3 (251-307)||(43170422-43170478)
[»] scaffold0438 (1 HSPs)
scaffold0438 (259-333)||(12905-12978)
[»] scaffold0085 (1 HSPs)
scaffold0085 (256-333)||(31591-31668)
[»] scaffold0008 (1 HSPs)
scaffold0008 (233-307)||(263761-263835)
[»] scaffold0176 (1 HSPs)
scaffold0176 (235-299)||(15090-15154)


Alignment Details
Target: chr7 (Bit Score: 273; Significance: 1e-152; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 450
Target Start/End: Complemental strand, 38701837 - 38701402
Alignment:
Q  1 catgtgattttatcgtcaagctatccttctcactctcccaatcacccatgttggcatt-tttaagggagtaacaatgtttat---attagaaaggaaaga 96  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||   |||||||||||||||    
T  38701837 catgtgattttatcgtcaagctatccttctcactctcccaatcacccatgttggcattctttaagggagtaacaatgtttattatattagaaaggaaaga 38701738  T
Q  97 accaggtagaattgtgtaattagaaaccaaagatttaccggtcgattcaaaacagatacgttgtatcatgtagacaccatcaatgccttatttgactata 196  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  38701737 accaggtagaattgtgtaattagaaaccaaagatttatcggtcgattcaaaacagatacgttgtatcatgtggacaccatcaatgccttatttgactata 38701638  T
Q  197 aatacacttcggtga-tctt-gaatttggttactttggtgactttgtttctatctctcttctaaccaataattctctttcatcaaaataatttattttaa 294  Q
    |||||||  |||| |  ||| ||   |  | | |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||    
T  38701637 aatacac--cggtaacacttagatgatcttgaatttggtgactttgtttctatatctcttctaaccaataattctctttcatcaaaataattaattttaa 38701540  T
Q  295 tcattcatctatcgttctctctcatctaaaatacacta-agtcaccaaaatcaccaaaatgcaaagccactcaagtatttccaataaacacacgcccatt 393  Q
    ||| ||||     ||||||||||||||||||||||||| ||||||||||||||||||||||||||              ||| |||||||||||||||||    
T  38701539 tcactcat-----gttctctctcatctaaaatacactagagtcaccaaaatcaccaaaatgcaaa--------------tcccataaacacacgcccatt 38701459  T
Q  394 cgcagccaaaaggctgcctgtgtggaagtaggggcaccagagaagtttgaatgtact 450  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38701458 cgcagccaaaaggctgcctgtgtggaagtaggggcaccagagaagtttgaatgtact 38701402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 199 - 327
Target Start/End: Complemental strand, 27311902 - 27311776
Alignment:
Q  199 tacacttcggtgatcttgaatttggttactttggtgactttgtttctatctctcttctaaccaataattctctttcatcaaaataatttattttaatcat 298  Q
    ||||||| |||||| |||  |||||| | ||||||||||||   |||||||||||  |||| |||||||||||  ||||||||||| |||||||||||||    
T  27311902 tacacttgggtgattttgtgtttggtgattttggtgactttaactctatctctctcttaactaataattctctcacatcaaaataaattattttaatcat 27311803  T
Q  299 tcatctatcgttctctctcatctaaaata 327  Q
    |||||||||   |||||||||||||||||    
T  27311802 tcatctatc--actctctcatctaaaata 27311776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 227 - 327
Target Start/End: Complemental strand, 42971743 - 42971643
Alignment:
Q  227 ctttggtgactttgtttctatctctcttctaaccaataattctctttcatcaaaataatttattttaatcattcatctatcgttctctctcatctaaaat 326  Q
    |||||||| ||||||||||||||||||  ||||||  |||||||| ||||| ||||||||||||||||||||||  | | | ||||||||||||||||||    
T  42971743 ctttggtgcctttgtttctatctctctcttaaccatcaattctctctcatctaaataatttattttaatcattcgcccaacattctctctcatctaaaat 42971644  T
Q  327 a 327  Q
    |    
T  42971643 a 42971643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 245 - 348
Target Start/End: Original strand, 40591024 - 40591128
Alignment:
Q  245 tatctctcttctaaccaataattctctttcatcaaaataatttattttaatcattcatctatcgttctctctcatctaaaatacactaa-gtcaccaaaa 343  Q
    |||||||||| ||| |||| ||||||||||||| ||||||||||||||||||||| ||||| | |||| | |||||||||||  ||||| |||||||| |    
T  40591024 tatctctcttttaatcaattattctctttcatctaaataatttattttaatcatttatctaacattctatttcatctaaaatgtactaatgtcaccaata 40591123  T
Q  344 tcacc 348  Q
    |||||    
T  40591124 tcacc 40591128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 231 - 301
Target Start/End: Complemental strand, 42691165 - 42691095
Alignment:
Q  231 ggtgactttgtttctatctctcttctaaccaataattctctttcatcaaaataatttattttaatcattca 301  Q
    |||| |||||| ||||||||||| ||||  ||||||||||| |||||||||||||||||||||||||||||    
T  42691165 ggtgcctttgtctctatctctctcctaattaataattctctctcatcaaaataatttattttaatcattca 42691095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 256 - 333
Target Start/End: Complemental strand, 22715887 - 22715810
Alignment:
Q  256 taaccaataattctctttcatcaaaataatttattttaatcattcatctatcgttctctctcatctaaaatacactaa 333  Q
    |||| ||||||| ||| || |||||||||||||||||||||||| |||||||  ||||| ||||||||||||||||||    
T  22715887 taacaaataattttctctcgtcaaaataatttattttaatcatttatctatcactctctttcatctaaaatacactaa 22715810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 229 - 326
Target Start/End: Complemental strand, 37685286 - 37685191
Alignment:
Q  229 ttggtgactttgtttctatctctcttctaaccaataattctctttcatcaaaataatttattttaatcattcatctatcgttctctctcatctaaaat 326  Q
    |||||| ||||||| ||||||||||  |||||| | |||||||  |||| ||||||||||||||||||||||||| | | ||||||||| ||||||||    
T  37685286 ttggtgcctttgttcctatctctctcttaaccattcattctct--catctaaataatttattttaatcattcatccaacattctctctcgtctaaaat 37685191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 226 - 299
Target Start/End: Original strand, 43375696 - 43375769
Alignment:
Q  226 actttggtgactttgtttctatctctcttctaaccaataattctctttcatcaaaataatttattttaatcatt 299  Q
    |||||||||| ||| | |||||||||||||||| ||||||||   |||||| ||||||||||||||||||||||    
T  43375696 actttggtgattttatctctatctctcttctaatcaataatttcatttcattaaaataatttattttaatcatt 43375769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 245 - 333
Target Start/End: Original strand, 32204751 - 32204839
Alignment:
Q  245 tatctctcttctaaccaataattctctttcatcaaaataatttattttaatcattcatctatcgttctctctcatctaaaatacactaa 333  Q
    ||||||||||  || |||| ||| ||| ||||  ||||||||||||||||||||| ||||||| |  ||||||||||||||||||||||    
T  32204751 tatctctctttaaatcaatcattatctctcatataaataatttattttaatcatttatctatcatcttctctcatctaaaatacactaa 32204839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 281 - 333
Target Start/End: Complemental strand, 33957527 - 33957475
Alignment:
Q  281 ataatttattttaatcattcatctatcgttctctctcatctaaaatacactaa 333  Q
    ||||||||||||||||||||||||||| |||| |||||||||||||| |||||    
T  33957527 ataatttattttaatcattcatctatcattctttctcatctaaaataaactaa 33957475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 228 - 326
Target Start/End: Complemental strand, 11369154 - 11369056
Alignment:
Q  228 tttggtgactttgtttctatctctcttctaaccaataattctctttcatcaaaataatttattttaatcattcatctatcgttctctctcatctaaaat 326  Q
    ||||||| |||||||  |||||||||  |||||| | ||| ||| || || ||||||||||||||||||||| ||| | | ||||||||||||||||||    
T  11369154 tttggtgcctttgttcatatctctctcttaaccatttattttctctcgtctaaataatttattttaatcatttatccaacattctctctcatctaaaat 11369056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 235 - 305
Target Start/End: Original strand, 19699857 - 19699927
Alignment:
Q  235 actttgtttctatctctcttctaaccaataattctctttcatcaaaataatttattttaatcattcatcta 305  Q
    ||||||||||||||| | |  ||| |||||||  ||| |||||||||||||||||||||||||||||||||    
T  19699857 actttgtttctatctatgtcataatcaataatattctctcatcaaaataatttattttaatcattcatcta 19699927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 245 - 307
Target Start/End: Complemental strand, 36436108 - 36436046
Alignment:
Q  245 tatctctcttctaaccaataattctctttcatcaaaataatttattttaatcattcatctatc 307  Q
    ||||||||||||||| ||| ||||||| |||||||||| |||||||||||| |||||| ||||    
T  36436108 tatctctcttctaactaatcattctctctcatcaaaatgatttattttaataattcatttatc 36436046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 237 - 326
Target Start/End: Complemental strand, 2628526 - 2628437
Alignment:
Q  237 tttgtttctatctctcttctaaccaataattctctttcatcaaaataatttattttaatcattcatctatcgttctctctcatctaaaat 326  Q
    ||||| |||||||||||  |||| | | ||||||| ||||| ||||| ||||||||||||||| ||  ||| ||||||||||||||||||    
T  2628526 tttgtgtctatctctctcttaacaactcattctctctcatctaaatagtttattttaatcatttattcatcattctctctcatctaaaat 2628437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 229 - 298
Target Start/End: Complemental strand, 30061240 - 30061171
Alignment:
Q  229 ttggtgactttgtttctatctctcttctaaccaataattctctttcatcaaaataatttattttaatcat 298  Q
    |||||||| |||||| |||||||||  ||| |||||||| ||| ||||| ||||||||||||||||||||    
T  30061240 ttggtgacattgtttttatctctctgttaatcaataattttctctcatctaaataatttattttaatcat 30061171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 273 - 333
Target Start/End: Original strand, 43279245 - 43279304
Alignment:
Q  273 tcatcaaaataatttattttaatcattcatctatcgttctctctcatctaaaatacactaa 333  Q
    |||| |||||||||||||||||||||||||||||| ||||||  |||| ||||||||||||    
T  43279245 tcattaaaataatttattttaatcattcatctatcattctcttccatc-aaaatacactaa 43279304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 275 - 329
Target Start/End: Original strand, 23021207 - 23021259
Alignment:
Q  275 atcaaaataatttattttaatcattcatctatcgttctctctcatctaaaataca 329  Q
    ||||||||||||||||||||||||| |||||||   |||||||||||||||||||    
T  23021207 atcaaaataatttattttaatcatttatctatc--actctctcatctaaaataca 23021259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 230 - 300
Target Start/End: Complemental strand, 18868024 - 18867954
Alignment:
Q  230 tggtgactttgtttctatctctcttctaaccaataattctctttcatcaaaataatttattttaatcattc 300  Q
    |||| ||||||| |||||||||||  |||| | | ||||||| ||||| ||||||||||||||||||||||    
T  18868024 tggtaactttgtgtctatctctctcttaacaactcattctctctcatctaaataatttattttaatcattc 18867954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 228 - 302
Target Start/End: Complemental strand, 41851341 - 41851267
Alignment:
Q  228 tttggtgactttgtttctatctctcttctaaccaataattctctttcatcaaaataatttattttaatcattcat 302  Q
    ||||||||| |||||| ||||||| || ||| |||| ||||||| | ||  ||||||||||||||||||||||||    
T  41851341 tttggtgacattgtttttatctctattttaatcaatcattctctctaatgtaaataatttattttaatcattcat 41851267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 235 - 300
Target Start/End: Complemental strand, 16876808 - 16876743
Alignment:
Q  235 actttgtttctatctctcttctaaccaataattctctttcatcaaaataatttattttaatcattc 300  Q
    ||||||| |||||||||||  |||| | | ||||||| ||||| ||||||||||||||||||||||    
T  16876808 actttgtgtctatctctctcttaacaactcattctctctcatctaaataatttattttaatcattc 16876743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 235 - 300
Target Start/End: Complemental strand, 23185994 - 23185929
Alignment:
Q  235 actttgtttctatctctcttctaaccaataattctctttcatcaaaataatttattttaatcattc 300  Q
    ||||||| |||||||||||  |||| | | ||||||| ||||| ||||||||||||||||||||||    
T  23185994 actttgtgtctatctctctcttaacaactcattctctctcatctaaataatttattttaatcattc 23185929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 260 - 333
Target Start/End: Complemental strand, 43368553 - 43368480
Alignment:
Q  260 caataattctctttcatcaaaataatttattttaatcattcatctatcgttctctctcatctaaaatacactaa 333  Q
    |||||||||  | ||||| ||||||||||||||||||||||||| ||| |||||||| |  ||||||| |||||    
T  43368553 caataattcattctcatctaaataatttattttaatcattcatccatcattctctcttacataaaatatactaa 43368480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 235 - 300
Target Start/End: Complemental strand, 46425409 - 46425344
Alignment:
Q  235 actttgtttctatctctcttctaaccaataattctctttcatcaaaataatttattttaatcattc 300  Q
    ||||||| |||||||||||  |||| | | ||||||| ||||| ||||||||||||||||||||||    
T  46425409 actttgtgtctatctctctcttaacaactcattctctctcatctaaataatttattttaatcattc 46425344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 246 - 326
Target Start/End: Complemental strand, 685081 - 685001
Alignment:
Q  246 atctctcttctaaccaataattctctttcatcaaaataatttattttaatcattcatctatcgttctctctcatctaaaat 326  Q
    ||||||||| ||| |||| ||| | | ||||| |||||||||||||||||| ||||||||   |||| |||||||||||||    
T  685081 atctctcttttaatcaatcattttatctcatctaaataatttattttaatctttcatctaatattctttctcatctaaaat 685001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 265 - 333
Target Start/End: Complemental strand, 19495206 - 19495138
Alignment:
Q  265 attctctttcatcaaaataatttattttaatcattcatctatcgttctctctcatctaaaatacactaa 333  Q
    ||||| ||||||| ||| ||| |||||||||||||||| |||| |||| | | ||||||||||||||||    
T  19495206 attctatttcatctaaagaatatattttaatcattcatttatcattcttttttatctaaaatacactaa 19495138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 235 - 300
Target Start/End: Original strand, 34328106 - 34328169
Alignment:
Q  235 actttgtttctatctctcttctaaccaataattctctttcatcaaaataatttattttaatcattc 300  Q
    ||||||| ||||||||||||  ||| | | ||||||| ||||| ||||||||||||||||||||||    
T  34328106 actttgtgtctatctctctt--aacaactcattctctctcatctaaataatttattttaatcattc 34328169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 267 - 301
Target Start/End: Original strand, 48379482 - 48379516
Alignment:
Q  267 tctctttcatcaaaataatttattttaatcattca 301  Q
    ||||| |||||||||||||||||||||||||||||    
T  48379482 tctctgtcatcaaaataatttattttaatcattca 48379516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 226 - 303
Target Start/End: Complemental strand, 17248795 - 17248718
Alignment:
Q  226 actttggtgactttgtttctatctctcttctaaccaataattctctttcatcaaaataatttattttaatcattcatc 303  Q
    ||||||||| |||||||  | |||||||  |||||||| ||| ||| | ||| |||||||||| ||||||||||||||    
T  17248795 actttggtgcctttgttcttgtctctctcttaaccaatcattttctctaatctaaataatttaatttaatcattcatc 17248718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 279 - 326
Target Start/End: Complemental strand, 9488818 - 9488770
Alignment:
Q  279 aaataatttattttaatcattcatctatcgttct-ctctcatctaaaat 326  Q
    ||||||||||||||||||||||||  ||| |||| ||||||||||||||    
T  9488818 aaataatttattttaatcattcattcatcattctcctctcatctaaaat 9488770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 236 - 333
Target Start/End: Complemental strand, 26825559 - 26825466
Alignment:
Q  236 ctttgtttctatctctcttctaaccaataattctctttcatcaaaataatttattttaatcattcatctatcgttctctctcatctaaaatacactaa 333  Q
    |||||||  ||||| |||| |||||| | ||||||| ||||| ||||    ||||||||||||||||| ||| |||||||| || ||||||| |||||    
T  26825559 ctttgttcatatctttcttttaaccattcattctctctcatctaaat----tattttaatcattcatccatcattctctcttatttaaaataaactaa 26825466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 94; Significance: 1e-45; HSPs: 31)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 244 - 375
Target Start/End: Complemental strand, 44132954 - 44132824
Alignment:
Q  244 ctatctctcttctaaccaataattctctttcatcaaaataatttattttaatcattcatctatcgttctctctcatctaaaatacact-aagtcaccaaa 342  Q
    |||||||||||  ||||||||||||||| ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| |||||||||||    
T  44132954 ctatctctctt--aaccaataattctctctcatcaaaataatttattttaatcattcatctatcattatctctcatctaaaatacactaaagtcaccaaa 44132857  T
Q  343 atcaccaaaatgcaaagccactcaagtatttcc 375  Q
    ||||||||||||||||| || ||||||||||||    
T  44132856 atcaccaaaatgcaaagtcattcaagtatttcc 44132824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 237 - 373
Target Start/End: Complemental strand, 1898187 - 1898050
Alignment:
Q  237 tttgtttctatctctcttctaaccaataattctctttcatcaaaataatttattttaatcattcatctatcgttctctctcatctaaaatacact-aagt 335  Q
    ||||||| |||||||||||||   || |||||||||| ||||||||||||||||||||||| | || |||| ||||||||||||||||||| ||| ||||    
T  1898187 tttgtttttatctctcttctagttaaaaattctcttttatcaaaataatttattttaatcagttatatatcattctctctcatctaaaatatactaaagt 1898088  T
Q  336 caccaaaatcaccaaaatgcaaagccactcaagtattt 373  Q
    || |||| ||| |||||||||||  |||||||||||||    
T  1898087 catcaaagtcatcaaaatgcaaaatcactcaagtattt 1898050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 274 - 375
Target Start/End: Original strand, 15135964 - 15136065
Alignment:
Q  274 catcaaaataatttattttaatcattcatctatcgttctctctcatctaaaatacactaagtcaccaaaatcaccaaaatgcaaagccactcaagtattt 373  Q
    |||||||||||||||||||||||| |||||||||  | ||||| ||||||||||||||||||||||||| |||| ||||| ||||  || ||||||||||    
T  15135964 catcaaaataatttattttaatcactcatctatcactttctcttatctaaaatacactaagtcaccaaagtcacaaaaatacaaaatcattcaagtattt 15136063  T
Q  374 cc 375  Q
    ||    
T  15136064 cc 15136065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 227 - 342
Target Start/End: Complemental strand, 226444 - 226330
Alignment:
Q  227 ctttggtgactttgtttctatctctcttctaaccaataattctctttcatcaaaataatttattttaatcattcatctatcgttctctctcatctaaaat 326  Q
    |||||||| |||||| ||||||||||| ||||| ||||||||||  ||||||| |||||||||||||||||||||  |||   ||||| |||||||||||    
T  226444 ctttggtgcctttgtctctatctctctcctaactaataattctc--tcatcaacataatttattttaatcattcaattataactctctttcatctaaaat 226347  T
Q  327 acact-aagtcaccaaa 342  Q
    ||||| |||||||||||    
T  226346 acactaaagtcaccaaa 226330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 227 - 342
Target Start/End: Complemental strand, 702857 - 702743
Alignment:
Q  227 ctttggtgactttgtttctatctctcttctaaccaataattctctttcatcaaaataatttattttaatcattcatctatcgttctctctcatctaaaat 326  Q
    |||||||| |||||| ||||||||||| ||||| ||||||||||  ||||||| |||||||||||||||||||||  |||   ||||| |||||||||||    
T  702857 ctttggtgcctttgtctctatctctctcctaactaataattctc--tcatcaacataatttattttaatcattcaattataactctctttcatctaaaat 702760  T
Q  327 acact-aagtcaccaaa 342  Q
    ||||| |||||||||||    
T  702759 acactaaagtcaccaaa 702743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 227 - 342
Target Start/End: Complemental strand, 740067 - 739953
Alignment:
Q  227 ctttggtgactttgtttctatctctcttctaaccaataattctctttcatcaaaataatttattttaatcattcatctatcgttctctctcatctaaaat 326  Q
    |||||||| |||||| ||||||||||| ||||| ||||||||||  ||||||| |||||||||||||||||||||  |||   ||||| |||||||||||    
T  740067 ctttggtgcctttgtctctatctctctcctaactaataattctc--tcatcaacataatttattttaatcattcaattataactctctttcatctaaaat 739970  T
Q  327 acact-aagtcaccaaa 342  Q
    ||||| |||||||||||    
T  739969 acactaaagtcaccaaa 739953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 227 - 342
Target Start/End: Complemental strand, 863962 - 863848
Alignment:
Q  227 ctttggtgactttgtttctatctctcttctaaccaataattctctttcatcaaaataatttattttaatcattcatctatcgttctctctcatctaaaat 326  Q
    |||||||| |||||| ||||||||||| ||||| ||||||||||  ||||||| |||||||||||||||||||||  |||   ||||| |||||||||||    
T  863962 ctttggtgcctttgtctctatctctctcctaactaataattctc--tcatcaacataatttattttaatcattcaattataactctctttcatctaaaat 863865  T
Q  327 acact-aagtcaccaaa 342  Q
    ||||| |||||||||||    
T  863864 acactaaagtcaccaaa 863848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 233 - 307
Target Start/End: Original strand, 12964327 - 12964401
Alignment:
Q  233 tgactttgtttctatctctcttctaaccaataattctctttcatcaaaataatttattttaatcattcatctatc 307  Q
    ||||||||| ||||| |||||| ||| |||| |||||||||||||||||||||||||||||||||||||| ||||    
T  12964327 tgactttgtgtctatttctcttttaatcaatcattctctttcatcaaaataatttattttaatcattcatatatc 12964401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 259 - 333
Target Start/End: Complemental strand, 26295487 - 26295413
Alignment:
Q  259 ccaataattctctttcatcaaaataatttattttaatcattcatctatcgttctctctcatctaaaatacactaa 333  Q
    ||||||||||||||||||| |||||||||| ||| |||||||||| | ||||||| |||||||||||||||||||    
T  26295487 ccaataattctctttcatctaaataatttactttgatcattcatccaccgttctccctcatctaaaatacactaa 26295413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 259 - 333
Target Start/End: Complemental strand, 26308744 - 26308670
Alignment:
Q  259 ccaataattctctttcatcaaaataatttattttaatcattcatctatcgttctctctcatctaaaatacactaa 333  Q
    ||||||||||||||||||| |||||||||| ||| |||||||||| | ||||||| |||||||||||||||||||    
T  26308744 ccaataattctctttcatctaaataatttactttgatcattcatccaccgttctccctcatctaaaatacactaa 26308670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 247 - 342
Target Start/End: Original strand, 35910591 - 35910685
Alignment:
Q  247 tctctcttctaaccaataattctctttcatcaaaataatttattttaatcattcatctatcgttctctctcatctaaaatac-actaagtcaccaaa 342  Q
    ||||||| |||||||||||||| || |||||||||| ||||||||||||||||||| ||||   |||||||||||||||||| || |||||||||||    
T  35910591 tctctctcctaaccaataattccctctcatcaaaatgatttattttaatcattcatttatc--actctctcatctaaaatacaacgaagtcaccaaa 35910685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 259 - 333
Target Start/End: Complemental strand, 26342817 - 26342744
Alignment:
Q  259 ccaataattctctttcatcaaaataatttattttaatcattcatctatcgttctctctcatctaaaatacactaa 333  Q
    ||||||||||||||||||| |||||||||| || | ||||||||| | |||||||||||||||||||||||||||    
T  26342817 ccaataattctctttcatctaaataatttacttga-tcattcatccaccgttctctctcatctaaaatacactaa 26342744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 233 - 307
Target Start/End: Original strand, 28008133 - 28008207
Alignment:
Q  233 tgactttgtttctatctctcttctaaccaataattctctttcatcaaaataatttattttaatcattcatctatc 307  Q
    ||||||||||| |||||||||||||| |||| ||| |||||||||||||||| ||||||||||||| ||| ||||    
T  28008133 tgactttgtttatatctctcttctaatcaatcattatctttcatcaaaataagttattttaatcatccatttatc 28008207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 233 - 307
Target Start/End: Original strand, 28065436 - 28065510
Alignment:
Q  233 tgactttgtttctatctctcttctaaccaataattctctttcatcaaaataatttattttaatcattcatctatc 307  Q
    ||||||||||| |||||||||||||| |||| ||| |||||||||||||||| ||||||||||||| ||| ||||    
T  28065436 tgactttgtttatatctctcttctaatcaatcattatctttcatcaaaataagttattttaatcatccatttatc 28065510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 229 - 333
Target Start/End: Complemental strand, 33681370 - 33681268
Alignment:
Q  229 ttggtgactttgtttctatctctcttctaaccaataattctctttcatcaaaa-taatttattttaatcattcatctatcgttctctctcatctaaaata 327  Q
    ||||||||||||| ||||||||||  ||||||||| || |||| |||| |||| |||||||||||||||||| ||||||| ||||||| |||| ||||||    
T  33681370 ttggtgactttgtctctatctctc--ctaaccaatcatgctctctcataaaaaataatttattttaatcatttatctatcattctctcacatc-aaaata 33681274  T
Q  328 cactaa 333  Q
    ||||||    
T  33681273 cactaa 33681268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 260 - 333
Target Start/End: Complemental strand, 20896254 - 20896181
Alignment:
Q  260 caataattctctttcatcaaaataatttattttaatcattcatctatcgttctctctcatctaaaatacactaa 333  Q
    |||| ||||||| ||||| |||||||||||||||||||||||| |||| || ||||||||||||||| ||||||    
T  20896254 caatcattctctctcatctaaataatttattttaatcattcatatatcattatctctcatctaaaatgcactaa 20896181  T

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Target: chr8; HSP #17
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 265 - 352
Target Start/End: Complemental strand, 4835032 - 4834944
Alignment:
Q  265 attctctttcatcaaaataatttattttaatcattcatctatcgttctctctcatctaaaat-acactaagtcaccaaaatcaccaaaa 352  Q
    ||||||||||| | ||||||||||||||||||||||||  ||| |||||||||||||||||| |  ||| |||||||| ||||||||||    
T  4835032 attctctttcacctaaataatttattttaatcattcattcatcattctctctcatctaaaatgaacctatgtcaccaatatcaccaaaa 4834944  T

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Target: chr8; HSP #18
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 228 - 307
Target Start/End: Original strand, 41951176 - 41951255
Alignment:
Q  228 tttggtgactttgtttctatctctcttctaaccaataattctctttcatcaaaataatttattttaatcattcatctatc 307  Q
    |||| ||||||||| ||||||||||| |||| |||||||||||| ||||||| |||||||| |||| |||||||| ||||    
T  41951176 tttgatgactttgtctctatctctctcctaatcaataattctctctcatcaagataatttaatttactcattcatttatc 41951255  T

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Target: chr8; HSP #19
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 233 - 373
Target Start/End: Original strand, 38646761 - 38646902
Alignment:
Q  233 tgactttgtttctatctctcttctaaccaataattctctttcatcaaaa-taatttattttaatcattcatctatcgttctctctcatctaaaatacact 331  Q
    |||| |||| ||||||| |||  |||||| | ||||||||||||||||| |||||||||||||||||||||  | | || ||||| ||| ||| |||| |    
T  38646761 tgacattgtatctatctttctcgtaaccagttattctctttcatcaaaattaatttattttaatcattcatagagcattatctcttatc-aaagtacatt 38646859  T
Q  332 aa-gtcaccaaaatcaccaaaatgcaaagccactcaagtattt 373  Q
    || |||||||| ||||||||||| ||| | ||| |||||||||    
T  38646860 aatgtcaccaatatcaccaaaattcaatgtcacccaagtattt 38646902  T

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Target: chr8; HSP #20
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 229 - 326
Target Start/End: Original strand, 22786539 - 22786635
Alignment:
Q  229 ttggtgactttgtttctatctctcttctaaccaataattctctttcatcaaaataatttattttaatcattcatctatcgttctctctcatctaaaat 326  Q
    |||||| ||||||| ||||||||||| |||||| | ||||||||||||  |||||||||| |||||| ||| || |||| |||| | |||||||||||    
T  22786539 ttggtgtctttgtt-ctatctctcttttaaccattcattctctttcatttaaataatttactttaattatttatttatcattctttttcatctaaaat 22786635  T

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Target: chr8; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 228 - 373
Target Start/End: Complemental strand, 6474064 - 6473922
Alignment:
Q  228 tttggtgactttgtttctatctctcttctaaccaataattctctttcatcaaaataatttattttaatcattcatctatcgttctctctcatctaaaata 327  Q
    |||||||| ||||| | ||||||||||||||| ||||||| ||  |||| |||||||||||||||||||| |||| |||  |  | |||| |||||||||    
T  6474064 tttggtgattttgtctatatctctcttctaactaataattatc--tcattaaaataatttattttaatcactcatatat--tattttctcgtctaaaata 6473969  T
Q  328 cact-aagtcaccaaaatcaccaaaatgcaaagccactcaagtattt 373  Q
    |||| ||||||  ||| | || ||||| ||||| || ||||||||||    
T  6473968 cactaaagtcattaaagttacaaaaatacaaagtcattcaagtattt 6473922  T

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Target: chr8; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 237 - 299
Target Start/End: Complemental strand, 25358161 - 25358099
Alignment:
Q  237 tttgtttctatctctcttctaaccaataattctctttcatcaaaataatttattttaatcatt 299  Q
    |||||| |||||||||||  ||||| ||||||||| ||||| || ||||||||||||||||||    
T  25358161 tttgttcctatctctctttaaaccattaattctctatcatctaattaatttattttaatcatt 25358099  T

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Target: chr8; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 237 - 299
Target Start/End: Complemental strand, 25494448 - 25494386
Alignment:
Q  237 tttgtttctatctctcttctaaccaataattctctttcatcaaaataatttattttaatcatt 299  Q
    |||||||||||||||||   ||||| ||||||||| ||||| || ||||||||||||||||||    
T  25494448 tttgtttctatctctctctaaaccattaattctctatcatctaattaatttattttaatcatt 25494386  T

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Target: chr8; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 255 - 301
Target Start/End: Complemental strand, 42127255 - 42127209
Alignment:
Q  255 ctaaccaataattctctttcatcaaaataatttattttaatcattca 301  Q
    ||||||||||||| | | |||||||||||||||||||||||||||||    
T  42127255 ctaaccaataattatttctcatcaaaataatttattttaatcattca 42127209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 237 - 302
Target Start/End: Complemental strand, 25391202 - 25391137
Alignment:
Q  237 tttgtttctatctctcttctaaccaataattctctttcatcaaaataatttattttaatcattcat 302  Q
    |||||| ||||||||||   ||||| ||||||||| ||||| || |||||||||||||||||||||    
T  25391202 tttgttcctatctctctctaaaccattaattctctatcatctaattaatttattttaatcattcat 25391137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 247 - 307
Target Start/End: Complemental strand, 15682701 - 15682641
Alignment:
Q  247 tctctcttctaaccaataattctctttcatcaaaataatttattttaatcattcatctatc 307  Q
    ||||||| |||||| || ||||| |||||||||||||| |||||||| |||||||| ||||    
T  15682701 tctctctcctaaccgatcattctttttcatcaaaataacttattttagtcattcatatatc 15682641  T

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Target: chr8; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 244 - 343
Target Start/End: Complemental strand, 33445887 - 33445788
Alignment:
Q  244 ctatctctcttctaaccaataattctctttcatcaaaataatttattttaatcattcatctatcgttctctctcatctaaaatacactaa-gtcaccaaa 342  Q
    ||||||||||  ||| |||| ||| ||| ||||| ||||||||||||| |||||||| | |||| ||||| ||||||||||| | ||||| |||||||||    
T  33445887 ctatctctctattaatcaatcattttctctcatctaaataatttattt-aatcattcttttatcattctcactcatctaaaaaatactaatgtcaccaaa 33445789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 235 - 299
Target Start/End: Complemental strand, 33938684 - 33938620
Alignment:
Q  235 actttgtttctatctctcttctaaccaataattctctttcatcaaaataatttattttaatcatt 299  Q
    ||||||| |||||||||||  |||| | | ||||||| ||||| |||||||||||||||||||||    
T  33938684 actttgtgtctatctctctcttaacaattcattctctctcatctaaataatttattttaatcatt 33938620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 245 - 325
Target Start/End: Original strand, 41649972 - 41650052
Alignment:
Q  245 tatctctcttctaaccaataattctctttcatcaaaataatttattttaatcattcatctatcgttctctctcatctaaaa 325  Q
    ||||||||| ||||| ||||||| ||| | ||||||||||||||| ||||||| | ||||||| ||   ||||||||||||    
T  41649972 tatctctctcctaacgaataattttctcttatcaaaataatttatcttaatcacttatctatcattaattctcatctaaaa 41650052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 279 - 329
Target Start/End: Complemental strand, 10968590 - 10968540
Alignment:
Q  279 aaataatttattttaatcattcatctatcgttctctctcatctaaaataca 329  Q
    |||||||||||||||||| ||||||||   || ||||||||||||||||||    
T  10968590 aaataatttattttaatctttcatctaatattttctctcatctaaaataca 10968540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 237 - 299
Target Start/End: Complemental strand, 25677515 - 25677453
Alignment:
Q  237 tttgtttctatctctcttctaaccaataattctctttcatcaaaataatttattttaatcatt 299  Q
    |||||| ||||||||||   ||||| ||||||||| ||||| || ||||||||||||||||||    
T  25677515 tttgttcctatctctctctaaaccattaattctctatcatctaattaatttattttaatcatt 25677453  T

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Target: chr4 (Bit Score: 90; Significance: 2e-43; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 244 - 375
Target Start/End: Complemental strand, 50041895 - 50041765
Alignment:
Q  244 ctatctctcttctaaccaataattctctttcatcaaaataatttattttaatcattcatctatcgttctctctcatctaaaatacact-aagtcaccaaa 342  Q
    |||||||||||  ||||||||||||||| ||||||||||||||||||||||||||||||||||| || |||||||||||||| ||||| |||||||||||    
T  50041895 ctatctctctt--aaccaataattctctctcatcaaaataatttattttaatcattcatctatcattatctctcatctaaaacacactaaagtcaccaaa 50041798  T
Q  343 atcaccaaaatgcaaagccactcaagtatttcc 375  Q
    ||||||||||||||||| || ||||||||||||    
T  50041797 atcaccaaaatgcaaagtcattcaagtatttcc 50041765  T

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Target: chr4; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 244 - 375
Target Start/End: Complemental strand, 50049117 - 50048987
Alignment:
Q  244 ctatctctcttctaaccaataattctctttcatcaaaataatttattttaatcattcatctatcgttctctctcatctaaaatacact-aagtcaccaaa 342  Q
    |||||||||||  ||||||||||||||| ||||||||||||||||||||||||||||||||||| || |||||||||||||| ||||| |||||||||||    
T  50049117 ctatctctctt--aaccaataattctctctcatcaaaataatttattttaatcattcatctatcattatctctcatctaaaacacactaaagtcaccaaa 50049020  T
Q  343 atcaccaaaatgcaaagccactcaagtatttcc 375  Q
    ||||||||||||||||| || ||||||||||||    
T  50049019 atcaccaaaatgcaaagtcattcaagtatttcc 50048987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 226 - 333
Target Start/End: Complemental strand, 36498700 - 36498593
Alignment:
Q  226 actttggtgactttgtttctatctctcttctaaccaataattctctttcatcaaaataatttattttaatcattcatctatcgttctctctcatctaaaa 325  Q
    |||| ||||||||||| |||||||||||||||||||||||||||||  |||||||||||||||||||||||| ||||||||| | |||||||||||||||    
T  36498700 acttcggtgactttgtctctatctctcttctaaccaataattctctcacatcaaaataatttattttaatcactcatctatcatcctctctcatctaaaa 36498601  T
Q  326 tacactaa 333  Q
    ||||||||    
T  36498600 tacactaa 36498593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 234 - 333
Target Start/End: Original strand, 52198346 - 52198445
Alignment:
Q  234 gactttgtttctatctctcttctaaccaataattctctttcatcaaaataatttattttaatcattcatctatcgttctctctcatctaaaatacactaa 333  Q
    |||||| | ||||||||  ||||||||||||||| ||| ||||||||||||||||||||||||||| ||||||| || ||||||||||||||||||||||    
T  52198346 gactttatctctatctcgattctaaccaataattatctctcatcaaaataatttattttaatcatttatctatcattatctctcatctaaaatacactaa 52198445  T

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Target: chr4; HSP #5
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 226 - 375
Target Start/End: Original strand, 34765078 - 34765228
Alignment:
Q  226 actttggtgactttgtttctatctctcttctaaccaataattctctttcatcaaaataatttattttaatcattcatctatcgttctctctcatctaaaa 325  Q
    ||||| |||||||||| ||||||| |||| ||||| |||||| |   | ||||||||| |||||| ||||||   ||||||| |||||| |||| |||||    
T  34765078 actttagtgactttgtctctatctttcttttaaccgataatttttcgttatcaaaatagtttattataatcacatatctatcattctctttcatataaaa 34765177  T
Q  326 tacactaa-gtcaccaaaatcaccaaaatgcaaagccactcaagtatttcc 375  Q
    |||||||| |||  ||||||||||||||||||||| |||||||||||||||    
T  34765178 tacactaaagtcgtcaaaatcaccaaaatgcaaagtcactcaagtatttcc 34765228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 228 - 341
Target Start/End: Complemental strand, 44015511 - 44015397
Alignment:
Q  228 tttggtgactttgtttctatctctcttctaaccaataattctctttcatcaaaataatttattttaatcattcatctatcgttctctctcatctaaaata 327  Q
    ||||||||| |||||  |||||||||  ||| ||||  || ||| ||||| ||||||||||||||||||||||||||||| |||| ||||||||||||||    
T  44015511 tttggtgacattgttcttatctctctcttaatcaatctttatctctcatctaaataatttattttaatcattcatctatcattctttctcatctaaaata 44015412  T
Q  328 cactaa-gtcaccaa 341  Q
    |||||| ||||||||    
T  44015411 cactaatgtcaccaa 44015397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 247 - 325
Target Start/End: Original strand, 33913960 - 33914036
Alignment:
Q  247 tctctcttctaaccaataattctctttcatcaaaataatttattttaatcattcatctatcgttctctctcatctaaaa 325  Q
    ||||||| ||||||||||||||||| |||||||||| ||||||||||||||||||| |||  | |||||||||||||||    
T  33913960 tctctctcctaaccaataattctctctcatcaaaatgatttattttaatcattcatttat--tactctctcatctaaaa 33914036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 236 - 326
Target Start/End: Complemental strand, 29544253 - 29544163
Alignment:
Q  236 ctttgtttctatctctcttctaaccaataattctctttcatcaaaataatttattttaatcattcatctatcgttctctctcatctaaaat 326  Q
    |||||| |||||||||||  |||| | | ||||||| ||||| |||||||||||||||||||||||| |||| || |||||||||||||||    
T  29544253 ctttgtgtctatctctctattaacaactcattctctatcatctaaataatttattttaatcattcatttatcattttctctcatctaaaat 29544163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 227 - 298
Target Start/End: Complemental strand, 54582209 - 54582139
Alignment:
Q  227 ctttggtgactttgtttctatctctcttctaaccaataattctctttcatcaaaataatttattttaatcat 298  Q
    |||||||| |||||| |||||||||||| |||| ||||||||| ||||||| ||||||||||||||||||||    
T  54582209 ctttggtgcctttgtctctatctctcttttaac-aataattctatttcatcgaaataatttattttaatcat 54582139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 260 - 326
Target Start/End: Original strand, 5052112 - 5052178
Alignment:
Q  260 caataattctctttcatcaaaataatttattttaatcattcatctatcgttctctctcatctaaaat 326  Q
    |||| ||||||| ||||||||||||||||||||||||||| || |||| ||||||||||| ||||||    
T  5052112 caatcattctctctcatcaaaataatttattttaatcatttatttatcattctctctcatttaaaat 5052178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 237 - 326
Target Start/End: Complemental strand, 52673288 - 52673199
Alignment:
Q  237 tttgtttctatctctcttctaaccaata-attctctttcatcaaaataatttattttaatcattcatctatcgttctctctcatctaaaat 326  Q
    ||||| ||||||||||| || ||||| | ||||||| ||||||||||||||||||||||| ||||||  ||| ||||||||||||||||||    
T  52673288 tttgtgtctatctctct-cttaccaacatattctctctcatcaaaataatttattttaattattcattcatcattctctctcatctaaaat 52673199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 265 - 326
Target Start/End: Complemental strand, 46079402 - 46079341
Alignment:
Q  265 attctctttcatcaaaataatttattttaatcattcatctatcgttctctctcatctaaaat 326  Q
    ||||||| ||||| ||||||||||||||||||||||||  ||| ||||||||||||||||||    
T  46079402 attctctctcatctaaataatttattttaatcattcattgatcattctctctcatctaaaat 46079341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 265 - 329
Target Start/End: Complemental strand, 19473113 - 19473049
Alignment:
Q  265 attctctttcatcaaaataatttattttaatcattcatctatcgttctctctcatctaaaataca 329  Q
    ||||| ||||||| |||||||||||||||||||||||| |||| || |||||| |||||||||||    
T  19473113 attctttttcatctaaataatttattttaatcattcatgtatcattttctctcctctaaaataca 19473049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 241 - 330
Target Start/End: Complemental strand, 32355078 - 32354993
Alignment:
Q  241 tttctatctctcttctaaccaataattctctttcatcaaaataatttattttaatcattcatctatcgttctctctcatctaaaatacac 330  Q
    ||||||||||||  ||| ||||| |||||||||||||||| |||||||||||||||   |||||||| || ||||||||| |||||||||    
T  32355078 tttctatctctcgcctagccaatcattctctttcatcaaagtaatttattttaatc---catctatcattatctctcatc-aaaatacac 32354993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 227 - 325
Target Start/End: Complemental strand, 29724449 - 29724351
Alignment:
Q  227 ctttggtgactttgtttctatctctcttctaaccaataattctctttcatcaaaataatttattttaatcattcatctatcgttctctctcatctaaaa 325  Q
    |||||||| ||||||| |||||| |||  |||||| | ||| ||| | ||| |||||||||||||||||||||||| |||  |||||| ||||||||||    
T  29724449 ctttggtgtctttgttcctatctttctcttaaccactcattatctcttatctaaataatttattttaatcattcatttattattctctatcatctaaaa 29724351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 228 - 302
Target Start/End: Original strand, 47907271 - 47907345
Alignment:
Q  228 tttggtgactttgtttctatctctcttctaaccaataattctctttcatcaaaataatttattttaatcattcat 302  Q
    |||||||||||||| |||||||||||  |||  ||| ||  ||| ||||||||||||||||||||||||||||||    
T  47907271 tttggtgactttgtgtctatctctctcataaggaatcatcatctctcatcaaaataatttattttaatcattcat 47907345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 260 - 330
Target Start/End: Complemental strand, 30643659 - 30643590
Alignment:
Q  260 caataattctctttcatcaaaataatttattttaatcattcatctatcgttctctctcatctaaaatacac 330  Q
    |||| ||||||| ||||| ||||||||||||||||||||||||| ||| || ||||| ||||||| |||||    
T  30643659 caatcattctctctcatctaaataatttattttaatcattcatccatcattatctct-atctaaattacac 30643590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 267 - 333
Target Start/End: Complemental strand, 31455954 - 31455888
Alignment:
Q  267 tctctttcatcaaaataatttattttaatcattcatctatcgttctctctcatctaaaatacactaa 333  Q
    ||||| ||||| ||||||||||||||||||||||||   || |||||| ||||||||| ||||||||    
T  31455954 tctctctcatctaaataatttattttaatcattcattcttcattctctttcatctaaagtacactaa 31455888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 236 - 302
Target Start/End: Complemental strand, 40202339 - 40202273
Alignment:
Q  236 ctttgtttctatctctcttctaaccaataattctctttcatcaaaataatttattttaatcattcat 302  Q
    |||||||  ||| |||||| |||||| | ||||||||||||| ||||||||||||||||| ||||||    
T  40202339 ctttgttcatatgtctcttttaaccactcattctctttcatctaaataatttattttaataattcat 40202273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 227 - 308
Target Start/End: Complemental strand, 53363770 - 53363691
Alignment:
Q  227 ctttggtgactttgtttctatctctcttctaaccaataattctctttcatcaaaataatttattttaatcattcatctatcg 308  Q
    ||||||||||||||||| ||||| | |   ||||||| ||||| | ||||||||||||||||||||||| ||| ||||||||    
T  53363770 ctttggtgactttgtttgtatcttttta--aaccaattattctttctcatcaaaataatttattttaattatttatctatcg 53363691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 265 - 326
Target Start/End: Original strand, 23332134 - 23332195
Alignment:
Q  265 attctctttcatcaaaataatttattttaatcattcatctatcgttctctctcatctaaaat 326  Q
    ||||||| ||||  ||||||  ||||||||||||||||||| | ||||||||||||||||||    
T  23332134 attctctctcatttaaataacatattttaatcattcatctaacattctctctcatctaaaat 23332195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 265 - 333
Target Start/End: Complemental strand, 1800952 - 1800884
Alignment:
Q  265 attctctttcatcaaaataatttattttaatcattcatctatcgttctctctcatctaaaatacactaa 333  Q
    ||||| ||||||| ||||||||||||||||| ||| || | | |||||||||| ||||||||| |||||    
T  1800952 attctttttcatctaaataatttattttaattatttatttgttgttctctctcgtctaaaataaactaa 1800884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 228 - 307
Target Start/End: Complemental strand, 888779 - 888700
Alignment:
Q  228 tttggtgactttgtttctatctctcttctaaccaataattctctttcatcaaaataatttattttaatcattcatctatc 307  Q
    |||||||||||||| | ||| |||||| |||| ||| | |  || |||||||||||||||||||||||| |||| |||||    
T  888779 tttggtgactttgtctttatatctcttataactaatcaatacctctcatcaaaataatttattttaatctttcacctatc 888700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 228 - 333
Target Start/End: Complemental strand, 1331108 - 1331002
Alignment:
Q  228 tttggtgactttgtttctatctctcttctaaccaataattctctttcatcaaaa-taatttatttt-aatcattcatctatcgttctctctcatctaaaa 325  Q
    ||||||||| |||| |||||||||||  |||||||| | ||||| | ||||||| || |||||||| |||||||||| || | |||||||| ||| ||||    
T  1331108 tttggtgacattgtgtctatctctctcgtaaccaatcactctctctaatcaaaattattttattttaaatcattcatataacattctctcttatc-aaaa 1331010  T
Q  326 tacactaa 333  Q
    ||||||||    
T  1331009 tacactaa 1331002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 279 - 326
Target Start/End: Original strand, 29693237 - 29693284
Alignment:
Q  279 aaataatttattttaatcattcatctatcgttctctctcatctaaaat 326  Q
    ||||||||||||||||| ||| || |||| ||||||||||||||||||    
T  29693237 aaataatttattttaattatttatttatcattctctctcatctaaaat 29693284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 229 - 326
Target Start/End: Complemental strand, 11077959 - 11077862
Alignment:
Q  229 ttggtgactttgtttctatctctcttctaaccaataattctctttcatcaaaataatttattttaatcattcatctatcgttctctctcatctaaaat 326  Q
    |||||||| ||||| ||||||| ||  ||| |||| ||||||| ||||| |||||| |  ||||||||||||||  ||| ||||||| |||| |||||    
T  11077959 ttggtgacattgttcctatctcactcttaatcaatcattctctctcatctaaataactatttttaatcattcatagatcattctctcccatccaaaat 11077862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 279 - 307
Target Start/End: Original strand, 27841089 - 27841117
Alignment:
Q  279 aaataatttattttaatcattcatctatc 307  Q
    |||||||||||||||||||||||||||||    
T  27841089 aaataatttattttaatcattcatctatc 27841117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 261 - 329
Target Start/End: Original strand, 31203345 - 31203413
Alignment:
Q  261 aataattctctttcatcaaaataatttattttaatcattcatctatcgttctctctcatctaaaataca 329  Q
    ||||||| | ||||||| |||||||||||||||||   |||| ||||  ||||| ||||||||||||||    
T  31203345 aataattttttttcatcgaaataatttattttaattgatcatttatcactctctttcatctaaaataca 31203413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 86; Significance: 6e-41; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 226 - 374
Target Start/End: Original strand, 24226048 - 24226199
Alignment:
Q  226 actttggtgactttgtttctatctctcttctaaccaataattctctttcatcaaaataatttattttaatcattcatctatcgttctctctcatctaaaa 325  Q
    ||||||||| |||||| | ||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||||    
T  24226048 actttggtggctttgtctttatttctctcctaaccaataattctctgtcatcaaaataatttattttaatcattcatctatcattttctctcatctaaaa 24226147  T
Q  326 tacactaa---gtcaccaaaatcaccaaaatgcaaagccactcaagtatttc 374  Q
    ||| ||||   ||||| ||| |||||||||| ||||| ||||||||||||||    
T  24226148 tactctaaattgtcacaaaagtcaccaaaatacaaagtcactcaagtatttc 24226199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 228 - 347
Target Start/End: Original strand, 6793486 - 6793606
Alignment:
Q  228 tttggtgactttgtttctatctctcttctaaccaataattctctttcatcaaaataatttattttaatcattcatctatcgttctctctcatctaaaata 327  Q
    |||||||| ||||| ||||||||| | ||||||||||||| ||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  6793486 tttggtgattttgtctctatctctatcctaaccaataattatctctcatcaaaataatttattttaatcactcatctatcgttctctctcatctaaaata 6793585  T
Q  328 cact-aagtcaccaaaatcac 347  Q
    |||| ||||||||||| ||||    
T  6793586 cactaaagtcaccaaagtcac 6793606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 233 - 333
Target Start/End: Original strand, 26847137 - 26847237
Alignment:
Q  233 tgactttgtttctatctctcttctaaccaataattctctttcatcaaaataatttattttaatcattcatctatcgttctctctcatctaaaatacacta 332  Q
    |||| |||||| |||||||||| ||| |||| ||| ||| | ||| ||||||||||||||| ||||||||||||| ||||||||||||||||||||||||    
T  26847137 tgacattgtttatatctctcttttaatcaattattatctcttatctaaataatttattttactcattcatctatcattctctctcatctaaaatacacta 26847236  T
Q  333 a 333  Q
    |    
T  26847237 a 26847237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 258 - 333
Target Start/End: Original strand, 512765 - 512840
Alignment:
Q  258 accaataattctctttcatcaaaataatttattttaatcattcatctatcgttctctctcatctaaaatacactaa 333  Q
    ||||||| |||||| ||||||||||||||||||||||||| ||||||||  |||||||||||||||||||||||||    
T  512765 accaatatttctctctcatcaaaataatttattttaatcactcatctattattctctctcatctaaaatacactaa 512840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 246 - 327
Target Start/End: Complemental strand, 32267099 - 32267018
Alignment:
Q  246 atctctcttctaaccaataattctctttcatcaaaataatttattttaatcattcatctatcgttctctctcatctaaaata 327  Q
    |||||| |||||||||||||||||||| ||||| |||||||||||||||||||| ||||||| |||||  ||||||||||||    
T  32267099 atctcttttctaaccaataattctcttccatcagaataatttattttaatcattaatctatcattctcattcatctaaaata 32267018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 245 - 304
Target Start/End: Original strand, 28067321 - 28067380
Alignment:
Q  245 tatctctcttctaaccaataattctctttcatcaaaataatttattttaatcattcatct 304  Q
    ||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||    
T  28067321 tatctctcttctaaccaatcattctctctcatcaaaataatttattttaatcattcatct 28067380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 232 - 333
Target Start/End: Original strand, 8585698 - 8585799
Alignment:
Q  232 gtgactttgtttctatctctcttctaaccaataattctctttcatcaaaataatttattttaatcattcatctatcgttctctctcatctaaaatacact 331  Q
    ||||| ||||| ||||||||||  ||| | || | ||||||||||| |||| |||||||||||||||||||| ||| |||||| ||||||||||||||||    
T  8585698 gtgacattgttcctatctctctcttaatcgatcactctctttcatctaaatcatttattttaatcattcatccatcattctctttcatctaaaatacact 8585797  T
Q  332 aa 333  Q
    ||    
T  8585798 aa 8585799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 237 - 298
Target Start/End: Complemental strand, 33906644 - 33906583
Alignment:
Q  237 tttgtttctatctctcttctaaccaataattctctttcatcaaaataatttattttaatcat 298  Q
    ||||| ||||||||||||||||| |||||||||||||||||||||| |||||||||||||||    
T  33906644 tttgtctctatctctcttctaacgaataattctctttcatcaaaatcatttattttaatcat 33906583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 273 - 333
Target Start/End: Original strand, 457686 - 457746
Alignment:
Q  273 tcatcaaaataatttattttaatcattcatctatcgttctctctcatctaaaatacactaa 333  Q
    ||||| ||||||||||||||||||||||||| ||| |||||||||||||||||||||||||    
T  457686 tcatctaaataatttattttaatcattcatccatcattctctctcatctaaaatacactaa 457746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 228 - 324
Target Start/End: Original strand, 6139310 - 6139406
Alignment:
Q  228 tttggtgactttgtttctatctctcttctaaccaataattctctttcatcaaaataatttattttaatcattcatctatcgttctctctcatctaaa 324  Q
    ||||||| ||||||| ||||||||||| |||||| | ||||||| ||||| |||||||||||||||||||||  |||| | ||||||||||| ||||    
T  6139310 tttggtgtctttgttcctatctctcttttaaccattcattctctctcatctaaataatttattttaatcatttgtctaacattctctctcatttaaa 6139406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 261 - 356
Target Start/End: Original strand, 31175973 - 31176069
Alignment:
Q  261 aataattctctttcatcaaaataatttattttaatcattcatctatcgttctctctcatctaaaatacact-aagtcaccaaaatcaccaaaatgca 356  Q
    |||||||||||| ||||||||||||||| ||||||||  | |||||| |||| |||||||||||||||||| |||||| |||| |||||||| ||||    
T  31175973 aataattctcttgcatcaaaataatttaatttaatcacacgtctatcattctttctcatctaaaatacactaaagtcatcaaagtcaccaaattgca 31176069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 269 - 329
Target Start/End: Complemental strand, 28730037 - 28729977
Alignment:
Q  269 tctttcatcaaaataatttattttaatcattcatctatcgttctctctcatctaaaataca 329  Q
    |||||||||||||||||||||||||| || | ||||||| |||||||||||||||||||||    
T  28730037 tctttcatcaaaataatttattttaagcactgatctatcattctctctcatctaaaataca 28729977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 265 - 343
Target Start/End: Complemental strand, 28963652 - 28963573
Alignment:
Q  265 attctctttcatcaaaataatttattttaatcattcatctatcgttctctctcatctaaaatacactaa-gtcaccaaaa 343  Q
    ||||||| |||||||||||| |||||||||||||||||   || |||||||||||||||||| |||||| ||||||||||    
T  28963652 attctctctcatcaaaataagttattttaatcattcattcttcattctctctcatctaaaatgcactaatgtcaccaaaa 28963573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 237 - 325
Target Start/End: Complemental strand, 3037462 - 3037376
Alignment:
Q  237 tttgtttctatctctcttctaaccaataattctctttcatcaaaataatttattttaatcattcatctatcgttctctctcatctaaaa 325  Q
    ||||||||||||||||||  ||||| | ||||||||||||| ||| ||||||||||||||||||||| | | || ||||||||| ||||    
T  3037462 tttgtttctatctctctt--aaccattcattctctttcatctaaaaaatttattttaatcattcatccaacattttctctcatcaaaaa 3037376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 269 - 329
Target Start/End: Complemental strand, 28720523 - 28720463
Alignment:
Q  269 tctttcatcaaaataatttattttaatcattcatctatcgttctctctcatctaaaataca 329  Q
    |||||||||||||||||||||||||| || | ||||||| |||| |||||| |||||||||    
T  28720523 tctttcatcaaaataatttattttaagcactgatctatcattctttctcatttaaaataca 28720463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 208 - 333
Target Start/End: Original strand, 31196563 - 31196690
Alignment:
Q  208 gtgatcttgaatttggttactttggtgactttgtttctatctctcttctaacc--aataattctctttcatcaaaataatttattttaatcattcatcta 305  Q
    ||||| |||| |||||| | |||| ||| ||||||||||||||| || |||    ||||||| |||  ||||||||||||||  ||||||||  | ||||    
T  31196563 gtgattttgagtttggtgattttgatgattttgtttctatctcttttttaattttaataattttctcgcatcaaaataatttgatttaatcacacttcta 31196662  T
Q  306 tcgttctctctcatctaaaatacactaa 333  Q
    || |||| ||||||||||||||||||||    
T  31196663 tcattctttctcatctaaaatacactaa 31196690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 230 - 315
Target Start/End: Original strand, 4870499 - 4870584
Alignment:
Q  230 tggtgactttgtttctatctctcttctaaccaataattctctttcatcaaaataatttattttaatcattcatctatcgttctctc 315  Q
    ||||| ||||||| |||| |||||| |||||||| ||| ||| ||||  ||||||| ||| ||||||||||||| ||| |||||||    
T  4870499 tggtgcctttgttcctatatctcttttaaccaatcattttctctcatttaaataatctatcttaatcattcatcaatcattctctc 4870584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 235 - 300
Target Start/End: Original strand, 9928260 - 9928325
Alignment:
Q  235 actttgtttctatctctcttctaaccaataattctctttcatcaaaataatttattttaatcattc 300  Q
    ||||||| |||||||||||  |||| | | ||||||| ||||| ||||||||||||||||||||||    
T  9928260 actttgtgtctatctctctcttaacaactcattctctctcatctaaataatttattttaatcattc 9928325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 234 - 307
Target Start/End: Complemental strand, 9977049 - 9976976
Alignment:
Q  234 gactttgtttctatctctcttctaaccaataattctctttcatcaaaataatttattttaatcattcatctatc 307  Q
    |||||||| ||||||| | |  |||| ||| || |||| | |||||||||||||||||||||||||||||||||    
T  9977049 gactttgtctctatctatttcataacaaatcatcctctctaatcaaaataatttattttaatcattcatctatc 9976976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 227 - 327
Target Start/End: Complemental strand, 167282 - 167182
Alignment:
Q  227 ctttggtgactttgtttctatctctcttctaaccaataattctctttcatcaaaataatttattttaatcattcatctatcgttctctctcatctaaaat 326  Q
    |||||||| |||||||  ||| |||||| |||||| | ||| ||||||||  |||||||||||||||||| ||||   | | || |||||||||||||||    
T  167282 ctttggtgtctttgttcatatatctcttttaaccattcattttctttcatttaaataatttattttaatctttcaatcaacattatctctcatctaaaat 167183  T
Q  327 a 327  Q
    |    
T  167182 a 167182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 227 - 301
Target Start/End: Original strand, 10349143 - 10349216
Alignment:
Q  227 ctttggtgactttgtttctatctctcttctaaccaataattctctttcatcaaaataatttattttaatcattca 301  Q
    |||||||| |||||| ||||||||||| |||||| |||||| | | || | |||||||||||||||||| |||||    
T  10349143 ctttggtgtctttgtctctatctctctcctaaccgataatt-tttctccttaaaataatttattttaattattca 10349216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 235 - 300
Target Start/End: Original strand, 22469698 - 22469763
Alignment:
Q  235 actttgtttctatctctcttctaaccaataattctctttcatcaaaataatttattttaatcattc 300  Q
    ||||||| ||||||||| |  |||| | | ||||||| ||||| ||||||||||||||||||||||    
T  22469698 actttgtgtctatctctttcttaacaactcattctctctcatctaaataatttattttaatcattc 22469763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 243 - 303
Target Start/End: Original strand, 423123 - 423183
Alignment:
Q  243 tctatctctcttctaaccaataattctctttcatcaaaataatttattttaatcattcatc 303  Q
    ||||| ||||||||||| ||  ||| ||| | ||||||||||||||||||||||| |||||    
T  423123 tctatatctcttctaactaaccattgtctcttatcaaaataatttattttaatcactcatc 423183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 237 - 300
Target Start/End: Original strand, 31743861 - 31743922
Alignment:
Q  237 tttgtttctatctctcttctaaccaataattctctttcatcaaaataatttattttaatcattc 300  Q
    ||||| |||||||||||| |||| | | |||||||  |||| ||||||||||||||||||||||    
T  31743861 tttgtgtctatctctcttttaacaacttattctct--catctaaataatttattttaatcattc 31743922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 84; Significance: 9e-40; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 231 - 373
Target Start/End: Complemental strand, 3622298 - 3622155
Alignment:
Q  231 ggtgactttgtttctatctctcttctaaccaataattctctttcatcaaaataatttattttaatcattcatctatcgttctctctcatctaaaatacac 330  Q
    ||||||||||| ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| || | |||| ||||| ||||||||||||||||    
T  3622298 ggtgactttgtctctatctctcttctaaccaataattttctctcatcaaaataatttattttaatcactcgtatatcattctcactcatctaaaatacac 3622199  T
Q  331 t-aagtcaccaaaatcaccaaaatgcaaagccactcaagtattt 373  Q
    | || | |||||| ||||||||||| |||| |||||||||||||    
T  3622198 taaaattaccaaagtcaccaaaatgtaaagtcactcaagtattt 3622155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 226 - 333
Target Start/End: Complemental strand, 3622428 - 3622321
Alignment:
Q  226 actttggtgactttgtttctatctctcttctaaccaataattctctttcatcaaaataatttattttaatcattcatctatcgttctctctcatctaaaa 325  Q
    |||| ||||||||| | ||||||||||||||||| |||| || | | ||||||||||||||||||||||| | || | |||| ||||||||||| |||||    
T  3622428 acttcggtgactttatctctatctctcttctaacaaatagttatttctcatcaaaataatttattttaattactcgtatatcattctctctcatataaaa 3622329  T
Q  326 tacactaa 333  Q
    ||||||||    
T  3622328 tacactaa 3622321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 235 - 329
Target Start/End: Complemental strand, 17250559 - 17250466
Alignment:
Q  235 actttgtttctatctctcttctaaccaataattctctttcatcaaaataatttattttaatcattcatctatcgttctctctcatctaaaataca 329  Q
    ||||||| ||||||||| |||||| |||| ||| ||| |||||||||||||||| |||||||||||||||||| |||||| ||||| ||||||||    
T  17250559 actttgtctctatctctattctaatcaatcattttctctcatcaaaataatttactttaatcattcatctatcattctctttcatc-aaaataca 17250466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 260 - 333
Target Start/End: Original strand, 33953152 - 33953225
Alignment:
Q  260 caataattctctttcatcaaaataatttattttaatcattcatctatcgttctctctcatctaaaatacactaa 333  Q
    |||||||||||| ||||| ||||||||||||||||| ||||||| | | |||||||||||||||||||||||||    
T  33953152 caataattctctctcatctaaataatttattttaattattcatccaccattctctctcatctaaaatacactaa 33953225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 231 - 327
Target Start/End: Original strand, 19824579 - 19824675
Alignment:
Q  231 ggtgactttgtttctatctctcttctaaccaataattctctttcatcaaaataatttattttaatcattcatctatcgttctctctcatctaaaata 327  Q
    |||| |||| || ||||||||||   ||||| | ||||||| ||||| ||||||||||||||||||||||||||| | |||||||||||||||||||    
T  19824579 ggtgcctttcttcctatctctctctaaaccattcattctctctcatctaaataatttattttaatcattcatctaacattctctctcatctaaaata 19824675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 267 - 326
Target Start/End: Original strand, 34928825 - 34928884
Alignment:
Q  267 tctctttcatcaaaataatttattttaatcattcatctatcgttctctctcatctaaaat 326  Q
    ||||||||||| |||||||||||||||||||||||| |||| ||||||||||||||||||    
T  34928825 tctctttcatctaaataatttattttaatcattcatttatcattctctctcatctaaaat 34928884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 227 - 333
Target Start/End: Complemental strand, 22029950 - 22029844
Alignment:
Q  227 ctttggtgactttgtttctatctctcttctaaccaataattctctttcatcaaaataatttattttaatcattcatctatcgttctctctcatctaaaat 326  Q
    |||| ||| ||||||||||||||||||   || || | ||||| | ||||| ||||||||||||||||||||||||| | | ||||||||||||||||||    
T  22029950 cttttgtgcctttgtttctatctctctctaaatcatttattctatctcatccaaataatttattttaatcattcatccaacattctctctcatctaaaat 22029851  T
Q  327 acactaa 333  Q
    | |||||    
T  22029850 aaactaa 22029844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 219 - 327
Target Start/End: Complemental strand, 14281918 - 14281809
Alignment:
Q  219 tttggttactttggtgactttgtttctatctctcttctaaccaataattctctttcatcaaaataatttattttaat-cattcatctatcgttctctctc 317  Q
    |||||| || || ||||| ||||| |||||| |||  ||| |||| |||||| || ||| ||||||||||||||||| |||||||||||| |||||||||    
T  14281918 tttggtgacattagtgacattgttcctatctttctcataatcaatcattctcgttaatctaaataatttattttaatacattcatctatcattctctctc 14281819  T
Q  318 atctaaaata 327  Q
    ||||||||||    
T  14281818 atctaaaata 14281809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 255 - 323
Target Start/End: Original strand, 9956626 - 9956694
Alignment:
Q  255 ctaaccaataattctctttcatcaaaataatttattttaatcattcatctatcgttctctctcatctaa 323  Q
    ||||||||||||||||| ||||||||||||||||||||||||| |||| |||| |  ||||||||||||    
T  9956626 ctaaccaataattctctctcatcaaaataatttattttaatcactcatttatcatcttctctcatctaa 9956694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 256 - 305
Target Start/End: Original strand, 37484836 - 37484885
Alignment:
Q  256 taaccaataattctctttcatcaaaataatttattttaatcattcatcta 305  Q
    |||| ||||||| |||||||||||||||||||||||||||||||||||||    
T  37484836 taactaataattttctttcatcaaaataatttattttaatcattcatcta 37484885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 226 - 289
Target Start/End: Complemental strand, 3622138 - 3622075
Alignment:
Q  226 actttggtgactttgtttctatctctcttctaaccaataattctctttcatcaaaataatttat 289  Q
    ||||| |||||||||| ||||||||| |||||| |||||||| ||| |||||||||||||||||    
T  3622138 actttagtgactttgtctctatctcttttctaatcaataattatctctcatcaaaataatttat 3622075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 256 - 373
Target Start/End: Original strand, 10519703 - 10519820
Alignment:
Q  256 taaccaataattctctttcatcaaaataatttattttaatcattcatctatcgttctctctcatctaaaatacacta-agtcaccaaaatcaccaaaatg 354  Q
    |||||||||||| ||||  ||||||||||||||||||| | ||| ||||| |  |||||  |||| ||||||||||| |||||||||| | |||||||      
T  10519703 taaccaataattatcttg-atcaaaataatttattttagttatttatctaccactctcttgcatcaaaaatacactacagtcaccaaagttaccaaaact 10519801  T
Q  355 caaagccactcaagtattt 373  Q
    ||||| |||||||||||||    
T  10519802 caaagtcactcaagtattt 10519820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 267 - 333
Target Start/End: Complemental strand, 33922922 - 33922856
Alignment:
Q  267 tctctttcatcaaaataatttattttaatcattcatctatcgttctctctcatctaaaatacactaa 333  Q
    ||||| ||||| | || ||||||||||||||||||| |||| |||||||||||||| ||||||||||    
T  33922922 tctctctcatctacattatttattttaatcattcatttatcattctctctcatctagaatacactaa 33922856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 228 - 333
Target Start/End: Original strand, 25468138 - 25468243
Alignment:
Q  228 tttggtgactttgtttctatctctcttctaaccaataattctctttcatcaaaataatttattttaatcattcatctatcgttctctctcatctaaaata 327  Q
    |||| ||| ||||| |||||||||||  |||  ||||||||||| |||| |||| || |||||||||||| |  | ||| |||| |||||||||||||||    
T  25468138 tttgatgattttgtctctatctctctcataattaataattctctctcataaaaagaaattattttaatcactagtatattgttccctctcatctaaaata 25468237  T
Q  328 cactaa 333  Q
    ||||||    
T  25468238 cactaa 25468243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 237 - 333
Target Start/End: Complemental strand, 8230867 - 8230772
Alignment:
Q  237 tttgtttctatctctcttctaaccaataattctctttcatcaaaataatttattttaatcattcatctatcgttctctctcatctaaaatacactaa 333  Q
    ||||| ||||||||||| |||| |||||| | | | ||||||||||||||||||||||||||| |   |||  ||||| ||||||||||||||||||    
T  8230867 tttgtctctatctctctcctaatcaataacttt-tctcatcaaaataatttattttaatcatttaatcatcactctctttcatctaaaatacactaa 8230772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 279 - 316
Target Start/End: Complemental strand, 18623634 - 18623597
Alignment:
Q  279 aaataatttattttaatcattcatctatcgttctctct 316  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  18623634 aaataatttattttaatcattcatctatcattctctct 18623597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 279 - 334
Target Start/End: Original strand, 17138556 - 17138611
Alignment:
Q  279 aaataatttattttaatcattcatctatcgttctctctcatctaaaatacactaag 334  Q
    ||||||||||||| ||||||| |||  || |||||||| |||||||||||||||||    
T  17138556 aaataatttatttcaatcatttatcggtcattctctctaatctaaaatacactaag 17138611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 279 - 326
Target Start/End: Original strand, 22658870 - 22658917
Alignment:
Q  279 aaataatttattttaatcattcatctatcgttctctctcatctaaaat 326  Q
    ||||||||||||||||||||||||  ||| |||||| |||||||||||    
T  22658870 aaataatttattttaatcattcattcatcattctctttcatctaaaat 22658917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 229 - 320
Target Start/End: Original strand, 28975557 - 28975647
Alignment:
Q  229 ttggtgactttgtttctatctctcttctaaccaataattctctttcatcaaaataatttattttaatcattcatctatcgttctctctcatc 320  Q
    ||||||| ||||| || |||||||| ||||||||| ||| |  || ||||||||||||||||||||||||| || |||| || ||| |||||    
T  28975557 ttggtgattttgtctccatctctctcctaaccaatcatttttatt-atcaaaataatttattttaatcatttatttatcattttctttcatc 28975647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 265 - 324
Target Start/End: Original strand, 42321089 - 42321148
Alignment:
Q  265 attctctttcatcaaaataatttattttaatcattcatctatcgttctctctcatctaaa 324  Q
    ||||||| ||||| ||||||| |||||||| |||||||||| | ||||||||||| ||||    
T  42321089 attctctctcatctaaataatatattttaaacattcatctaacattctctctcatataaa 42321148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 235 - 300
Target Start/End: Complemental strand, 37515654 - 37515589
Alignment:
Q  235 actttgtttctatctctcttctaaccaataattctctttcatcaaaataatttattttaatcattc 300  Q
    ||||||| |||||||||||  |||| | | ||| ||| ||||| ||||||||||||||||||||||    
T  37515654 actttgtgtctatctctctcttaacaactcattatctatcatctaaataatttattttaatcattc 37515589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 78; Significance: 4e-36; HSPs: 34)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 223 - 351
Target Start/End: Complemental strand, 4213944 - 4213815
Alignment:
Q  223 gttactttggtgactttgtttctatctctcttctaaccaataattctctttcatcaaaataatttattttaatcattcatctatcgttctctctcatcta 322  Q
    ||||||||||||||||||| ||| ||||||||| || |||||||| ||| |  |||||||||||||||||||||| |||| |||||||||||||||||||    
T  4213944 gttactttggtgactttgtctctgtctctcttccaatcaataattatctcttctcaaaataatttattttaatcactcatatatcgttctctctcatcta 4213845  T
Q  323 aaatacact-aagtcaccaaaatcaccaaa 351  Q
    ||||||| | ||||||||||||||||||||    
T  4213844 aaatacattaaagtcaccaaaatcaccaaa 4213815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 219 - 333
Target Start/End: Complemental strand, 46325698 - 46325585
Alignment:
Q  219 tttggttactttggtgactttgtttctatctctcttctaaccaataattctctttcatcaaaataatttattttaatcattcatctatcgttctctctca 318  Q
    |||||| || ||||||||||||| |||| ||||||  ||| |||| ||||||| |||||||||||| |||||||||||||||||||||| ||||||||||    
T  46325698 tttggtgacattggtgactttgtctctaactctctcataatcaatcattctctctcatcaaaataacttattttaatcattcatctatcattctctctca 46325599  T
Q  319 tctaaaatacactaa 333  Q
    || ||||||||||||    
T  46325598 tc-aaaatacactaa 46325585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 231 - 343
Target Start/End: Complemental strand, 3950393 - 3950278
Alignment:
Q  231 ggtgactttgtttctatctctct-tct-aaccaataattctctttcatcaaaataatttattttaatcattcatctatcgttctctctcatctaaaatac 328  Q
    |||||| ||||| |||||||||| ||| || |||| ||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| |    
T  3950393 ggtgacattgttcctatctctctctcttaatcaattattctctttcatcaaaataatttattttaatcattcatcgatcattctctctcatctaaaatgc 3950294  T
Q  329 actaa-gtcaccaaaa 343  Q
    || || ||||||||||    
T  3950293 accaatgtcaccaaaa 3950278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 227 - 333
Target Start/End: Complemental strand, 19431490 - 19431384
Alignment:
Q  227 ctttggtgactttgtttctatctctcttctaaccaataattctctttcatcaaaataatttattttaatcattcatctatcgttctctctcatctaaaat 326  Q
    |||||||  |||||| ||||| |||||  |||||||| ||||||| ||||| ||||||||||||||||||||||||| ||| |||| |||||||||||||    
T  19431490 ctttggtttctttgtgtctatatctctcttaaccaatcattctctctcatctaaataatttattttaatcattcatccatcattctgtctcatctaaaat 19431391  T
Q  327 acactaa 333  Q
    |||||||    
T  19431390 acactaa 19431384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 236 - 333
Target Start/End: Complemental strand, 11872279 - 11872182
Alignment:
Q  236 ctttgtttctatctctcttctaaccaataattctctttcatcaaaataatttattttaatcattcatctatcgttctctctcatctaaaatacactaa 333  Q
    |||||||||||| |||||  |||||||||||||||| |||||||||||||||||| ||||||||||   ||| |||||| ||||||||||||||||||    
T  11872279 ctttgtttctatatctctcataaccaataattctctctcatcaaaataatttattataatcattcaatcatcattctctttcatctaaaatacactaa 11872182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 214 - 333
Target Start/End: Original strand, 46325393 - 46325509
Alignment:
Q  214 ttgaatttggttactttggtgactttgtttctatctctcttctaaccaataattctctttcatcaaaataatttattttaatcattcatctatcgttctc 313  Q
    |||| |||||| || ||||||||||||| |||||||||||  ||| |||| |||||||  |||||||||||||||||||||||||||||||||| ||| |    
T  46325393 ttgagtttggtgacattggtgactttgtctctatctctctcataatcaatcattctct--catcaaaataatttattttaatcattcatctatcattccc 46325490  T
Q  314 tctcatctaaaatacactaa 333  Q
    |||||||  |||||||||||    
T  46325491 tctcatc-caaatacactaa 46325509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 231 - 329
Target Start/End: Complemental strand, 49315830 - 49315732
Alignment:
Q  231 ggtgactttgtttctatctctcttctaaccaataattctctttcatcaaaataatttattttaatcattcatctatcgttctctctcatctaaaataca 329  Q
    ||||||||||| |||||||||||  ||| |||||||| | ||||||||||||||||||||||||||| ||||||| | ||||||||||||  |||||||    
T  49315830 ggtgactttgtctctatctctctcataatcaataattatatttcatcaaaataatttattttaatcactcatctaccattctctctcatcctaaataca 49315732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 228 - 299
Target Start/End: Complemental strand, 7537082 - 7537011
Alignment:
Q  228 tttggtgactttgtttctatctctcttctaaccaataattctctttcatcaaaataatttattttaatcatt 299  Q
    |||||||||||||| ||||||||||| ||||||||| | ||||||| |||||||||||||||||||||||||    
T  7537082 tttggtgactttgtctctatctctctcctaaccaatcactctcttttatcaaaataatttattttaatcatt 7537011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 236 - 333
Target Start/End: Complemental strand, 17368487 - 17368390
Alignment:
Q  236 ctttgtttctatctctcttctaaccaataattctctttcatcaaaataatttattttaatcattcatctatcgttctctctcatctaaaatacactaa 333  Q
    |||||| ||| ||||| | ||||||||||||||||| ||||||||||||||||||||||| |||||   |||  ||||| ||||||||||||||||||    
T  17368487 ctttgtctctgtctctttcctaaccaataattctctctcatcaaaataatttattttaattattcaatcatcactctctttcatctaaaatacactaa 17368390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 229 - 333
Target Start/End: Complemental strand, 44448594 - 44448492
Alignment:
Q  229 ttggtgactttgtttctatctctcttctaaccaataattctctttcatcaaaataatttattttaatcattcatctatcgttctctctcatctaaaatac 328  Q
    |||||||| |||||||||||||||  |||| |||| ||| | | ||||  |||||||||||||||||||||||| |||| ||||||| ||||||||||||    
T  44448594 ttggtgacattgtttctatctctc--ctaatcaatcattttatctcatttaaataatttattttaatcattcatatatcattctctcccatctaaaatac 44448497  T
Q  329 actaa 333  Q
    |||||    
T  44448496 actaa 44448492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 237 - 326
Target Start/End: Complemental strand, 48915075 - 48914986
Alignment:
Q  237 tttgtttctatctctcttctaaccaataattctctttcatcaaaataatttattttaatcattcatctatcgttctctctcatctaaaat 326  Q
    ||||| |||||||||||  |||| | | ||||||| ||||||||||||||||||||||||||||||  ||| ||||||||||||||||||    
T  48915075 tttgtgtctatctctctcttaacaactcattctctctcatcaaaataatttattttaatcattcattcatcattctctctcatctaaaat 48914986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 237 - 326
Target Start/End: Complemental strand, 48915466 - 48915377
Alignment:
Q  237 tttgtttctatctctcttctaaccaataattctctttcatcaaaataatttattttaatcattcatctatcgttctctctcatctaaaat 326  Q
    ||||| |||||||||||  |||| | | ||||||| ||||||||||||||||||||||||||||||  ||| ||||||||||||||||||    
T  48915466 tttgtgtctatctctctcttaacaactcattctctctcatcaaaataatttattttaatcattcattcatcattctctctcatctaaaat 48915377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 228 - 333
Target Start/End: Original strand, 26056779 - 26056887
Alignment:
Q  228 tttggtgactttgtttctatctctcttctaac---caataattctctttcatcaaaataatttattttaatcattcatctatcgttctctctcatctaaa 324  Q
    |||| ||||||||| | |||||||||||||||    | ||||||||||| || |||||||||||||||||| ||| |||||||  ||| |||||||||||    
T  26056779 tttgatgactttgtctttatctctcttctaacaagtagtaattctcttttattaaaataatttattttaattatttatctatcactctatctcatctaaa 26056878  T
Q  325 atacactaa 333  Q
    |||||||||    
T  26056879 atacactaa 26056887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 226 - 301
Target Start/End: Complemental strand, 31108835 - 31108760
Alignment:
Q  226 actttggtgactttgtttctatctctcttctaaccaataattctctttcatcaaaataatttattttaatcattca 301  Q
    |||| |||| |||||| ||| ||||||| ||||||||||||| |||  |||||||||| |||||||||||||||||    
T  31108835 acttgggtgcctttgtctctgtctctctcctaaccaataattttctcacatcaaaatagtttattttaatcattca 31108760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 236 - 326
Target Start/End: Original strand, 24671156 - 24671246
Alignment:
Q  236 ctttgtttctatctctcttctaaccaataattctctttcatcaaaataatttattttaatcattcatctatcgttctctctcatctaaaat 326  Q
    ||||||||| |||| |||  |||||| | ||||||| ||||  ||||||||||||||||||||||||  |||  |||||||||||||||||    
T  24671156 ctttgtttccatctttctcttaaccactcattctctctcatttaaataatttattttaatcattcattcatcactctctctcatctaaaat 24671246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 279 - 333
Target Start/End: Original strand, 34430054 - 34430108
Alignment:
Q  279 aaataatttattttaatcattcatctatcgttctctctcatctaaaatacactaa 333  Q
    ||||||||||||||||||||||||||| | |||| ||||||||||||| ||||||    
T  34430054 aaataatttattttaatcattcatctaactttctttctcatctaaaatgcactaa 34430108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 237 - 315
Target Start/End: Complemental strand, 48915265 - 48915187
Alignment:
Q  237 tttgtttctatctctcttctaaccaataattctctttcatcaaaataatttattttaatcattcatctatcgttctctc 315  Q
    ||||| |||||||||||  |||| | | ||||||| ||||||||||||||||||||||||||||||  ||| |||||||    
T  48915265 tttgtgtctatctctctcttaacaactcattctctctcatcaaaataatttattttaatcattcattcatcattctctc 48915187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 249 - 290
Target Start/End: Complemental strand, 4347492 - 4347451
Alignment:
Q  249 tctcttctaaccaataattctctttcatcaaaataatttatt 290  Q
    ||||||||||| ||||||||||||||||||||||||||||||    
T  4347492 tctcttctaactaataattctctttcatcaaaataatttatt 4347451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 269 - 325
Target Start/End: Original strand, 49177428 - 49177483
Alignment:
Q  269 tctttcatcaaaataatttattttaatcattcatctatcgttctctctcatctaaaa 325  Q
    ||||||||| ||||||||||||||||||||||||| ||| || ||||||||||||||    
T  49177428 tctttcatctaaataatttattttaatcattcatc-atcattttctctcatctaaaa 49177483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 236 - 299
Target Start/End: Original strand, 37719044 - 37719107
Alignment:
Q  236 ctttgtttctatctctcttctaaccaataattctctttcatcaaaataatttattttaatcatt 299  Q
    |||||| | ||||| ||| ||||||||||||| ||| ||||||||||||||||||||| |||||    
T  37719044 ctttgtctatatctttctcctaaccaataattatctctcatcaaaataatttattttattcatt 37719107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 229 - 300
Target Start/End: Original strand, 51748545 - 51748616
Alignment:
Q  229 ttggtgactttgtttctatctctcttctaaccaataattctctttcatcaaaataatttattttaatcattc 300  Q
    ||||| ||||||| ||||||| |||| |||| | | ||||||| ||||| ||||||||||||||||||||||    
T  51748545 ttggtaactttgtgtctatctttcttttaacaactcattctctctcatctaaataatttattttaatcattc 51748616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 236 - 326
Target Start/End: Complemental strand, 19456401 - 19456311
Alignment:
Q  236 ctttgtttctatctctcttctaaccaataattctctttcatcaaaataatttattttaatcattcatctatcgttctctctcatctaaaat 326  Q
    |||||| ||||||||| |  |||| | | ||||||| ||||| ||||||||||||||||||||  ||  ||| ||||||||||||||||||    
T  19456401 ctttgtgtctatctctttcttaacaattcattctctctcatctaaataatttattttaatcatctattcatcattctctctcatctaaaat 19456311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 236 - 326
Target Start/End: Original strand, 26478562 - 26478652
Alignment:
Q  236 ctttgtttctatctctcttctaaccaataattctctttcatcaaaataatttattttaatcattcatctatcgttctctctcatctaaaat 326  Q
    |||||| ||||||| |||| |||| | | ||| ||||||||  |||| |||||||||||| ||||||  ||| ||||||||||||||||||    
T  26478562 ctttgtgtctatctttcttttaacaattcattatctttcatttaaatgatttattttaattattcattcatcattctctctcatctaaaat 26478652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 255 - 301
Target Start/End: Complemental strand, 33939668 - 33939622
Alignment:
Q  255 ctaaccaataattctctttcatcaaaataatttattttaatcattca 301  Q
    ||||||||||||||| | |||| ||||||||||||||||||||||||    
T  33939668 ctaaccaataattctttatcattaaaataatttattttaatcattca 33939622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 235 - 300
Target Start/End: Complemental strand, 27032391 - 27032326
Alignment:
Q  235 actttgtttctatctctcttctaaccaataattctctttcatcaaaataatttattttaatcattc 300  Q
    ||||||| |||||||||||  |||| | | ||||||| ||||| ||||||||||||||||||||||    
T  27032391 actttgtgtctatctctctcttaacaactcattctctctcatctaaataatttattttaatcattc 27032326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 235 - 300
Target Start/End: Original strand, 27907702 - 27907767
Alignment:
Q  235 actttgtttctatctctcttctaaccaataattctctttcatcaaaataatttattttaatcattc 300  Q
    ||||||| |||||||||||  |||| | | ||||||| ||||| ||||||||||||||||||||||    
T  27907702 actttgtgtctatctctctcttaacaactcattctctctcatctaaataatttattttaatcattc 27907767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 235 - 300
Target Start/End: Original strand, 48843375 - 48843440
Alignment:
Q  235 actttgtttctatctctcttctaaccaataattctctttcatcaaaataatttattttaatcattc 300  Q
    ||||||| |||||||||||  |||| | | ||||||| ||||| ||||||||||||||||||||||    
T  48843375 actttgtatctatctctctcttaacaattcattctctctcatctaaataatttattttaatcattc 48843440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 279 - 315
Target Start/End: Original strand, 15106251 - 15106287
Alignment:
Q  279 aaataatttattttaatcattcatctatcgttctctc 315  Q
    ||||||||||||||||||||||||||||| |||||||    
T  15106251 aaataatttattttaatcattcatctatcattctctc 15106287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 227 - 295
Target Start/End: Original strand, 49177236 - 49177304
Alignment:
Q  227 ctttggtgactttgtttctatctctcttctaaccaataattctctttcatcaaaataatttattttaat 295  Q
    |||||||  ||||||| ||||||||||| |||||| | ||| ||| ||||| |||||||||||||||||    
T  49177236 ctttggtatctttgttcctatctctcttttaaccattcattttctctcatctaaataatttattttaat 49177304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 238 - 320
Target Start/End: Complemental strand, 5398111 - 5398029
Alignment:
Q  238 ttgtttctatctctcttctaaccaataattctctttcatcaaaataatttattttaatcattcatctatcgttctctctcatc 320  Q
    |||| |||||||||||  |||||| | ||||||| ||||| ||||| ||||||||||| ||||||  ||| ||||||| ||||    
T  5398111 ttgtctctatctctctcttaaccactcattctctctcatctaaatagtttattttaataattcattcatcattctctcccatc 5398029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 312 - 372
Target Start/End: Complemental strand, 4899964 - 4899904
Alignment:
Q  312 tctctcatctaaaatacact-aagtcaccaaaatcaccaaaatgcaaagccactcaagtatt 372  Q
    |||||||||||||||| ||| || | ||||||||||||||||| ||||| ||||||||||||    
T  4899964 tctctcatctaaaatatactaaatttaccaaaatcaccaaaat-caaagtcactcaagtatt 4899904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 279 - 343
Target Start/End: Original strand, 45781221 - 45781286
Alignment:
Q  279 aaataatttattttaatcattcatctatcgttctctctcatctaaaatacactaa-gtcaccaaaa 343  Q
    ||||||||||||||||||||||||| ||| || ||||  || |||| |||||||| ||||||||||    
T  45781221 aaataatttattttaatcattcatccatcattatctcaaatataaattacactaatgtcaccaaaa 45781286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 267 - 319
Target Start/End: Original strand, 17923857 - 17923909
Alignment:
Q  267 tctctttcatcaaaataatttattttaatcattcatctatcgttctctctcat 319  Q
    ||||| ||||| ||||||||||||||||| ||||||| | | |||||||||||    
T  17923857 tctctctcatctaaataatttattttaattattcatccaacattctctctcat 17923909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 228 - 276
Target Start/End: Original strand, 42100373 - 42100421
Alignment:
Q  228 tttggtgactttgtttctatctctcttctaaccaataattctctttcat 276  Q
    |||| |||||||||||||||||  ||||||||||||| |||||| ||||    
T  42100373 tttgatgactttgtttctatcttgcttctaaccaatatttctctctcat 42100421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 74; Significance: 9e-34; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 228 - 348
Target Start/End: Complemental strand, 28640239 - 28640118
Alignment:
Q  228 tttggtgactttgtttctatctctcttctaaccaataattctctttcatcaaaataatttattttaatcattcatctatcgttctctctcatctaaaata 327  Q
    |||||||||||||| ||||||| ||| ||||  ||||| ||||||| ||||||||||||||||||||||||||||||||| |||||| ||||||||||||    
T  28640239 tttggtgactttgtctctatctttctcctaataaataactctcttttatcaaaataatttattttaatcattcatctatcattctctttcatctaaaata 28640140  T
Q  328 cact-aagtcaccaaaatcacc 348  Q
    |||| ||||||||||| |||||    
T  28640139 cactaaagtcaccaaagtcacc 28640118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 228 - 375
Target Start/End: Original strand, 21835978 - 21836124
Alignment:
Q  228 tttggtgactttgtttctatctctcttctaaccaataattctctttcatcaaaataatttattttaatcattcatctatcgttctctctcatctaaaata 327  Q
    |||||||||||||| ||||||||| | ||||||||||||| |   ||||||||||||||||||||||||| ||||||||| ||||||||  ||| |||||    
T  21835978 tttggtgactttgtctctatctctttcctaaccaataatttttcctcatcaaaataatttattttaatcactcatctatcattctctct--tctgaaata 21836075  T
Q  328 cact-aagtcaccaaaatcaccaaaatgcaaagccactcaagtatttcc 375  Q
    |||| |||||| |||| |||| |||||||| |  |||||||||||||||    
T  21836076 cactaaagtcatcaaagtcacgaaaatgcagaatcactcaagtatttcc 21836124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 227 - 326
Target Start/End: Complemental strand, 32832693 - 32832594
Alignment:
Q  227 ctttggtgactttgtttctatctctcttctaaccaataattctctttcatcaaaataatttattttaatcattcatctatcgttctctctcatctaaaat 326  Q
    |||||||| ||| ||| ||||||||||  |||||| | ||||||| ||||| ||||||||||||||||||||||||| | | ||||||||||||||||||    
T  32832693 ctttggtgccttcgttcctatctctctcttaaccattcattctctctcatctaaataatttattttaatcattcatccaacattctctctcatctaaaat 32832594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 201 - 307
Target Start/End: Original strand, 1208582 - 1208687
Alignment:
Q  201 cacttcggtgatcttgaatttggttactttggtgactttgtttctatctctcttctaaccaataattctctttcatcaaaataatttattttaatcattc 300  Q
    |||||| ||||  |||| |||||| ||||| |||| ||||| |||||||||||  |||||||||||||||| |||| |||||||||||||||||||| ||    
T  1208582 cacttctgtgactttgagtttggtaactttagtga-tttgtctctatctctctcttaaccaataattctctctcattaaaataatttattttaatcactc 1208680  T
Q  301 atctatc 307  Q
    |||||||    
T  1208681 atctatc 1208687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 237 - 326
Target Start/End: Original strand, 23395934 - 23396023
Alignment:
Q  237 tttgtttctatctctcttctaaccaataattctctttcatcaaaataatttattttaatcattcatctatcgttctctctcatctaaaat 326  Q
    ||||| |||||||||||  |||| | | ||||||| ||||| |||||||||||||||||||||||| |||| ||||||||||||||||||    
T  23395934 tttgtgtctatctctctcttaacaactcattctctatcatctaaataatttattttaatcattcatttatcattctctctcatctaaaat 23396023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 228 - 333
Target Start/End: Complemental strand, 40204826 - 40204721
Alignment:
Q  228 tttggtgactttgtttctatctctcttctaaccaataattctctttcatcaaaataatttattttaatcattcatctatcgttctctctcatctaaaata 327  Q
    |||| |||| |||||| |||||| ||  ||| |||| ||||||||||| | ||||||||||||||||| ||||||||||| ||||||||||| |||||||    
T  40204826 tttgatgacattgtttatatctccctcttaatcaattattctctttcacctaaataatttattttaataattcatctatcattctctctcatgtaaaata 40204727  T
Q  328 cactaa 333  Q
     |||||    
T  40204726 aactaa 40204721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 220 - 287
Target Start/End: Original strand, 14818692 - 14818759
Alignment:
Q  220 ttggttactttggtgactttgtttctatctctcttctaaccaataattctctttcatcaaaataattt 287  Q
    ||||| |||||||||||||||| |||||||||||  |||||||||||||||| |||||||||||||||    
T  14818692 ttggtgactttggtgactttgtctctatctctctcataaccaataattctctctcatcaaaataattt 14818759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 231 - 333
Target Start/End: Complemental strand, 13772880 - 13772778
Alignment:
Q  231 ggtgactttgtttctatctctcttctaaccaataattctctttcatcaaaataatttattttaatcattcatctatcgttctctctcatctaaaatacac 330  Q
    |||||| |||| | ||||||||| ||||| ||||||| ||| |||||||||| ||||| |||||||| ||||||||  |||| | |||||||||||||||    
T  13772880 ggtgacattgtctatatctctctcctaacgaataattttctctcatcaaaatgatttaatttaatcactcatctattattctttttcatctaaaatacac 13772781  T
Q  331 taa 333  Q
    |||    
T  13772780 taa 13772778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 273 - 326
Target Start/End: Complemental strand, 6752128 - 6752075
Alignment:
Q  273 tcatcaaaataatttattttaatcattcatctatcgttctctctcatctaaaat 326  Q
    ||||| |||||||||||||||||||||||| |||| ||||||||||||||||||    
T  6752128 tcatctaaataatttattttaatcattcatttatcattctctctcatctaaaat 6752075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 265 - 326
Target Start/End: Original strand, 39729015 - 39729076
Alignment:
Q  265 attctctttcatcaaaataatttattttaatcattcatctatcgttctctctcatctaaaat 326  Q
    ||||||| ||||| ||||||||||||||||||||||||  ||| ||||||||||||||||||    
T  39729015 attctctctcatctaaataatttattttaatcattcattcatcattctctctcatctaaaat 39729076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 265 - 326
Target Start/End: Complemental strand, 41069735 - 41069674
Alignment:
Q  265 attctctttcatcaaaataatttattttaatcattcatctatcgttctctctcatctaaaat 326  Q
    ||||||| ||||| ||||||||||||||||||||||||  ||| ||||||||||||||||||    
T  41069735 attctctctcatctaaataatttattttaatcattcattcatcattctctctcatctaaaat 41069674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 228 - 299
Target Start/End: Original strand, 5455844 - 5455915
Alignment:
Q  228 tttggtgactttgtttctatctctcttctaaccaataattctctttcatcaaaataatttattttaatcatt 299  Q
    |||| ||||||||||| |||||  || ||||| ||||||||||| ||| |||||||||||||||||||||||    
T  5455844 tttgatgactttgtttttatcttactactaacaaataattctctctcaccaaaataatttattttaatcatt 5455915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 260 - 346
Target Start/End: Original strand, 8209317 - 8209404
Alignment:
Q  260 caataattctctttcatcaaaataatttattttaatcattcatctatcgttctctctcatctaaaatacact-aagtcaccaaaatca 346  Q
    |||||||||||| |||||||||||||||||||||||||||||| || | |||| | | ||| ||| || ||| |||||||||||||||    
T  8209317 caataattctctctcatcaaaataatttattttaatcattcatttaccattcttttttatcaaaagtatactaaagtcaccaaaatca 8209404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 236 - 326
Target Start/End: Original strand, 11226146 - 11226236
Alignment:
Q  236 ctttgtttctatctctcttctaaccaataattctctttcatcaaaataatttattttaatcattcatctatcgttctctctcatctaaaat 326  Q
    |||||| |||||||||||  |||| | | ||||||| ||||| ||||||||||||||||||||||||   || ||||||||||| ||||||    
T  11226146 ctttgtgtctatctctctcttaacaactcattctctctcatctaaataatttattttaatcattcattcgtcattctctctcatttaaaat 11226236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 214 - 306
Target Start/End: Original strand, 8044257 - 8044350
Alignment:
Q  214 ttgaatttggtta-ctttggtgactttgtttctatctctcttctaaccaataattctctttcatcaaaataatttattttaatcattcatctat 306  Q
    ||||||||||||| |||||| |  |||| || ||||| |||  |||||| |||||||| |||||| ||||||||||||||||||||||| ||||    
T  8044257 ttgaatttggttaactttggagcatttggttttatctttctcttaaccattaattctccttcatctaaataatttattttaatcattcaactat 8044350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 235 - 300
Target Start/End: Original strand, 15141879 - 15141944
Alignment:
Q  235 actttgtttctatctctcttctaaccaataattctctttcatcaaaataatttattttaatcattc 300  Q
    ||||||| |||||||||||| |||| | | ||||||| ||||| ||||||||||||||||||||||    
T  15141879 actttgtgtctatctctcttttaacaacttattctctctcatctaaataatttattttaatcattc 15141944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 235 - 300
Target Start/End: Complemental strand, 3496870 - 3496805
Alignment:
Q  235 actttgtttctatctctcttctaaccaataattctctttcatcaaaataatttattttaatcattc 300  Q
    ||||||| |||||||||||  |||| | | ||||||| ||||| ||||||||||||||||||||||    
T  3496870 actttgtgtctatctctctcttaacaactcattctctctcatctaaataatttattttaatcattc 3496805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 233 - 302
Target Start/End: Complemental strand, 21100071 - 21100002
Alignment:
Q  233 tgactttgtttctatctctcttctaaccaataattctctttcatcaaaataatttattttaatcattcat 302  Q
    ||||||| ||| ||||||| ||||||  ||||||| || | |||||||||||||||||||||| ||||||    
T  21100071 tgactttatttttatctcttttctaattaataattttcgtacatcaaaataatttattttaattattcat 21100002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 228 - 297
Target Start/End: Original strand, 862475 - 862544
Alignment:
Q  228 tttggtgactttgtttctatctctcttctaaccaataattctctttcatcaaaataatttattttaatca 297  Q
    |||||||  |||||||||||||||||   ||| | | ||||| ||||||| |||||||||||||||||||    
T  862475 tttggtgtttttgtttctatctctctctaaactatttattctttttcatctaaataatttattttaatca 862544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 238 - 315
Target Start/End: Complemental strand, 36562829 - 36562752
Alignment:
Q  238 ttgtttctatctctcttctaaccaataattctctttcatcaaaataatttattttaatcattcatctatcgttctctc 315  Q
    ||||| ||||||||||  ||| || | ||||||| ||||| ||||||||||||||| ||||||||  ||| |||||||    
T  36562829 ttgttcctatctctctcttaatcattcattctctctcatctaaataatttattttactcattcattcatcattctctc 36562752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 271 - 328
Target Start/End: Complemental strand, 38529936 - 38529879
Alignment:
Q  271 tttcatcaaaataatttattttaatcattcatctatcgttctctctcatctaaaatac 328  Q
    ||||||| ||||||||||||||||||||||||  ||  || ||||||||||| |||||    
T  38529936 tttcatctaaataatttattttaatcattcataaattattatctctcatctagaatac 38529879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 271 - 307
Target Start/End: Original strand, 7261192 - 7261228
Alignment:
Q  271 tttcatcaaaataatttattttaatcattcatctatc 307  Q
    ||||||||||||||||||||||||| ||| |||||||    
T  7261192 tttcatcaaaataatttattttaattatttatctatc 7261228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 229 - 329
Target Start/End: Complemental strand, 13477787 - 13477687
Alignment:
Q  229 ttggtgactttgtttctatctctcttctaaccaataattctctttcatcaaaataatttattttaatcattcatctatcgttctctctcatctaaaatac 328  Q
    |||||||| |||||  ||| |||||  ||| |||| | ||||| ||||  |||||| |||||||||||||||||  ||| |||||||| ||| |||||||    
T  13477787 ttggtgacattgttcatatttctctcttaatcaatcagtctctctcatttaaataaattattttaatcattcattcatcattctctcttatccaaaatac 13477688  T
Q  329 a 329  Q
    |    
T  13477687 a 13477687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 278 - 334
Target Start/End: Original strand, 38790513 - 38790568
Alignment:
Q  278 aaaataatttattttaatcattcatctatcgttctctctcatctaaaatacactaag 334  Q
    |||||||||||||||||||||| ||| | | |||||||| ||| |||||||||||||    
T  38790513 aaaataatttattttaatcatttatcgaacattctctcttatc-aaaatacactaag 38790568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 7e-19; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 237 - 333
Target Start/End: Original strand, 34305789 - 34305884
Alignment:
Q  237 tttgtttctatctctcttctaaccaataattctctttcatcaaaataatttattttaatcattcatctatcgttctctctcatctaaaatacactaa 333  Q
    |||| |||||||||| | ||||| |||||  |||| ||||||||||||| ||||||||||| ||||||||| |||||||||||||||||||| ||||    
T  34305789 tttgcttctatctct-tcctaacaaataagcctctctcatcaaaataatatattttaatcactcatctatcattctctctcatctaaaatactctaa 34305884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 236 - 326
Target Start/End: Original strand, 10688608 - 10688698
Alignment:
Q  236 ctttgtttctatctctcttctaaccaataattctctttcatcaaaataatttattttaatcattcatctatcgttctctctcatctaaaat 326  Q
    |||||| |||||||||||  |||| | | ||||||| ||||| ||||||||||||||||||||||||  ||| ||||||||||||||||||    
T  10688608 ctttgtgtctatctctctcttaacaactcattctctctcatctaaataatttattttaatcattcattcatcattctctctcatctaaaat 10688698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 227 - 301
Target Start/End: Original strand, 52404684 - 52404758
Alignment:
Q  227 ctttggtgactttgtttctatctctcttctaaccaataattctctttcatcaaaataatttattttaatcattca 301  Q
    |||||||| |||||| ||||||||||| |||| |||||||| | ||||||||||||||||||||||||| |||||    
T  52404684 ctttggtgtctttgtctctatctctctcctaatcaataattatttttcatcaaaataatttattttaattattca 52404758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 260 - 333
Target Start/End: Complemental strand, 16013575 - 16013502
Alignment:
Q  260 caataattctctttcatcaaaataatttattttaatcattcatctatcgttctctctcatctaaaatacactaa 333  Q
    |||||||||  | ||||| |||||||||| |||||||||||||| || ||||||||| ||||||||||||||||    
T  16013575 caataattccttgtcatctaaataatttactttaatcattcatccattgttctctctgatctaaaatacactaa 16013502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 267 - 326
Target Start/End: Complemental strand, 39485530 - 39485471
Alignment:
Q  267 tctctttcatcaaaataatttattttaatcattcatctatcgttctctctcatctaaaat 326  Q
    ||||| ||||| ||||||||||||||||||||||||| | | ||||||||||||||||||    
T  39485530 tctctctcatctaaataatttattttaatcattcatccaaccttctctctcatctaaaat 39485471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 237 - 307
Target Start/End: Complemental strand, 8114371 - 8114301
Alignment:
Q  237 tttgtttctatctctcttctaaccaataattctctttcatcaaaataatttattttaatcattcatctatc 307  Q
    |||||||||||||||| |||||||||| ||||| ||| | |||||| |||||||||||| |||||| ||||    
T  8114371 tttgtttctatctctcctctaaccaatcattcttttttaccaaaatcatttattttaattattcatttatc 8114301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 235 - 300
Target Start/End: Original strand, 39972991 - 39973056
Alignment:
Q  235 actttgtttctatctctcttctaaccaataattctctttcatcaaaataatttattttaatcattc 300  Q
    ||||||| |||||||||||  |||| | | ||||||| ||||||||||||||||||||||||||||    
T  39972991 actttgtgtctatctctctcttaacaactcattctctctcatcaaaataatttattttaatcattc 39973056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 235 - 300
Target Start/End: Original strand, 39994190 - 39994255
Alignment:
Q  235 actttgtttctatctctcttctaaccaataattctctttcatcaaaataatttattttaatcattc 300  Q
    ||||||| |||||||||||| |||| | | ||||||| ||||| ||||||||||||||||||||||    
T  39994190 actttgtatctatctctcttttaacaactcattctctctcatctaaataatttattttaatcattc 39994255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 231 - 314
Target Start/End: Complemental strand, 42681930 - 42681849
Alignment:
Q  231 ggtgactttgtttctatctctcttctaaccaataattctctttcatcaaaataatttattttaatcattcatctatcgttctct 314  Q
    ||||||| ||| ||||||||||  ||| ||||||||| ||||  ||||||||||||||||||||| | ||||||||| ||||||    
T  42681930 ggtgactatgtctctatctctc--ctagccaataattatcttctatcaaaataatttattttaattactcatctatcattctct 42681849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 232 - 307
Target Start/End: Original strand, 30240864 - 30240939
Alignment:
Q  232 gtgactttgtttctatctctcttctaaccaataattctctttcatcaaaataatttattttaatcattcatctatc 307  Q
    |||||||| ||| |||||||||  ||| |||| | ||||| |||||||||||||||||||||||||| ||| ||||    
T  30240864 gtgactttatttttatctctctcttaatcaattaatctctctcatcaaaataatttattttaatcatccatttatc 30240939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 235 - 300
Target Start/End: Original strand, 4037140 - 4037205
Alignment:
Q  235 actttgtttctatctctcttctaaccaataattctctttcatcaaaataatttattttaatcattc 300  Q
    ||||||| |||||||||||  |||| | | ||||||| ||||| ||||||||||||||||||||||    
T  4037140 actttgtgtctatctctctcttaacaactcattctctctcatctaaataatttattttaatcattc 4037205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 235 - 300
Target Start/End: Original strand, 11233505 - 11233570
Alignment:
Q  235 actttgtttctatctctcttctaaccaataattctctttcatcaaaataatttattttaatcattc 300  Q
    ||||||| |||||||||||  |||| | | ||||||| ||||| ||||||||||||||||||||||    
T  11233505 actttgtgtctatctctctcttaacaactcattctctctcatctaaataatttattttaatcattc 11233570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 243 - 284
Target Start/End: Original strand, 42999162 - 42999203
Alignment:
Q  243 tctatctctcttctaaccaataattctctttcatcaaaataa 284  Q
    ||||||||||| ||||||||||||| ||||||||||||||||    
T  42999162 tctatctctctcctaaccaataattatctttcatcaaaataa 42999203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 235 - 300
Target Start/End: Original strand, 49279488 - 49279553
Alignment:
Q  235 actttgtttctatctctcttctaaccaataattctctttcatcaaaataatttattttaatcattc 300  Q
    ||||||| |||||||||||  |||| | | ||||||| ||||| ||||||||||||||||||||||    
T  49279488 actttgtgtctatctctctcttaacaactcattctctctcatctaaataatttattttaatcattc 49279553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 232 - 328
Target Start/End: Original strand, 16278768 - 16278864
Alignment:
Q  232 gtgactttgtttctatctctcttctaaccaataattctctttcatcaaaataatttattttaatcattcatctatcgttctctctcatctaaaatac 328  Q
    ||||| |||||  |||||||||  ||| |||| ||||| | ||| | ||||||||||||||||| ||||||| ||| |||| ||| |||||||||||    
T  16278768 gtgacattgttcttatctctctcttaatcaattattctttatcacctaaataatttattttaattattcatccatcattctttcttatctaaaatac 16278864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 273 - 308
Target Start/End: Complemental strand, 40902350 - 40902315
Alignment:
Q  273 tcatcaaaataatttattttaatcattcatctatcg 308  Q
    ||||||| ||||||||||||||||||||||||||||    
T  40902350 tcatcaatataatttattttaatcattcatctatcg 40902315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 229 - 283
Target Start/End: Original strand, 782244 - 782298
Alignment:
Q  229 ttggtgactttgtttctatctctcttctaaccaataattctctttcatcaaaata 283  Q
    ||||||||||||| ||||||||||| ||||| ||  ||||||| |||||||||||    
T  782244 ttggtgactttgtctctatctctctcctaacaaaacattctctctcatcaaaata 782298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 257 - 303
Target Start/End: Original strand, 20345072 - 20345118
Alignment:
Q  257 aaccaataattctctttcatcaaaataatttattttaatcattcatc 303  Q
    ||||||| ||||||| ||||  |||||||||||||||||||||||||    
T  20345072 aaccaatcattctctctcatttaaataatttattttaatcattcatc 20345118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 243 - 296
Target Start/End: Complemental strand, 27825102 - 27825049
Alignment:
Q  243 tctatctctcttctaaccaataattctctttcatcaaaataatttattttaatc 296  Q
    ||||||||| || |||| ||||||| | | ||||||||||||||||||||||||    
T  27825102 tctatctctgttttaactaataattatttctcatcaaaataatttattttaatc 27825049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 273 - 326
Target Start/End: Original strand, 47548873 - 47548926
Alignment:
Q  273 tcatcaaaataatttattttaatcattcatctatcgttctctctcatctaaaat 326  Q
    ||||| |||||||||||||||||||| |||  | | ||||||||||||||||||    
T  47548873 tcatctaaataatttattttaatcatccattcaacattctctctcatctaaaat 47548926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 265 - 301
Target Start/End: Original strand, 35054932 - 35054968
Alignment:
Q  265 attctctttcatcaaaataatttattttaatcattca 301  Q
    ||||| |||||||||||||||| ||||||||||||||    
T  35054932 attctttttcatcaaaataattcattttaatcattca 35054968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 251 - 307
Target Start/End: Complemental strand, 43170478 - 43170422
Alignment:
Q  251 tcttctaaccaataattctctttcatcaaaataatttattttaatcattcatctatc 307  Q
    |||| |||| || |||| |||||||| |||||||||||||||||||| || ||||||    
T  43170478 tcttttaacaaaaaattatctttcattaaaataatttattttaatcactcctctatc 43170422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0438 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0438
Description:

Target: scaffold0438; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 259 - 333
Target Start/End: Complemental strand, 12978 - 12905
Alignment:
Q  259 ccaataattctctttcatcaaaataatttattttaatcattcatctatcgttctctctcatctaaaatacactaa 333  Q
    ||||||||||||||||||| |||||||||| || | ||||||||| | |||||||||||||||||||||||||||    
T  12978 ccaataattctctttcatctaaataatttacttga-tcattcatccaccgttctctctcatctaaaatacactaa 12905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 256 - 333
Target Start/End: Original strand, 31591 - 31668
Alignment:
Q  256 taaccaataattctctttcatcaaaataatttattttaatcattcatctatcgttctctctcatctaaaatacactaa 333  Q
    |||||||| ||| | | ||||| ||||||||||||||||||||||||||||  ||||||||| |||||||||||||||    
T  31591 taaccaatcattttttatcatctaaataatttattttaatcattcatctattattctctctcgtctaaaatacactaa 31668  T

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Target: scaffold0008 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 233 - 307
Target Start/End: Complemental strand, 263835 - 263761
Alignment:
Q  233 tgactttgtttctatctctcttctaaccaataattctctttcatcaaaataatttattttaatcattcatctatc 307  Q
    ||||||||||| ||||||| | ||||||||| | | ||| | ||||||| |||||||||||||||||||| ||||    
T  263835 tgactttgtttttatctctttcctaaccaatcactttctcttatcaaaagaatttattttaatcattcatgtatc 263761  T

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Target: scaffold0176 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 235 - 299
Target Start/End: Original strand, 15090 - 15154
Alignment:
Q  235 actttgtttctatctctcttctaaccaataattctctttcatcaaaataatttattttaatcatt 299  Q
    ||||||| ||||||||| |  |||| | | ||||||| |||||||||||||||||||||||||||    
T  15090 actttgtgtctatctctatcttaacaactcattctctctcatcaaaataatttattttaatcatt 15154  T

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