View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18162_high_12 (Length: 446)

Name: NF18162_high_12
Description: NF18162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18162_high_12
NF18162_high_12
[»] chr3 (5 HSPs)
chr3 (52-427)||(5739102-5739476)
chr3 (52-427)||(5776214-5776588)
chr3 (52-413)||(15271805-15272165)
chr3 (52-413)||(40874860-40875220)
chr3 (59-185)||(7775387-7775513)
[»] chr6 (4 HSPs)
chr6 (52-413)||(11326690-11327050)
chr6 (52-413)||(13222977-13223337)
chr6 (315-427)||(17537891-17538003)
chr6 (206-319)||(17537529-17537641)
[»] chr8 (1 HSPs)
chr8 (52-168)||(23899180-23899296)
[»] chr4 (1 HSPs)
chr4 (59-230)||(52410202-52410373)
[»] chr1 (1 HSPs)
chr1 (55-116)||(46186355-46186416)


Alignment Details
Target: chr3 (Bit Score: 261; Significance: 1e-145; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 52 - 427
Target Start/End: Complemental strand, 5739476 - 5739102
Alignment:
Q  52 aacaatgaatggcttcaagggttatatagtatcagagcatcatggataccggtttataatagaagtgaattttttgttgggatgaatacaactcaaagaa 151  Q
    ||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| ||||||| ||| |||||| ||| ||||||||    
T  5739476 aacaatgaatggcttcaagggttatatagtatcagagaatcattgataccggtttataatagaagtgatttttttgctggaatgaatgcaattcaaagaa 5739377  T
Q  152 gtgaaagcattaattcatttttt-gattcttttgtaaatgcttcaacaaaattgcaagaatttgtgttaaaatttgaaaaaggcgcttgatagccgctta 250  Q
    |||||||| |||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| ||| |||||||||||||||    
T  5739376 gtgaaagctttaattcatttttttgattcttttgtaaatgcttcaacaacattgcaagaatttgtattaaaatttgaaaa-ggctcttgatagccgctta 5739278  T
Q  251 gcggtagaaaaaagagaggattatgaaagtaagcataaaactcggaggtatacaacatggtcagaacttgaggtgcatgttggatctatctatacaagaa 350  Q
      || ||||||||||||||||||||||| |||||||| | |||| |||| ||||||||| ||| ||||||||||||||| ||||||||||||||||||||    
T  5739277 caggcagaaaaaagagaggattatgaaaataagcatacatctcgcaggtttacaacatg-tcaaaacttgaggtgcatgatggatctatctatacaagaa 5739179  T
Q  351 atatattttgtaaatttcaagatgagcttgcgaagatcaataaatttagaagaaagaagattaaaagagaaggagct 427  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  5739178 atatattttgtaaatttcacgatgagcttgcgaagatcaataaatttagaaaaaagaagattaaaagagaaggagct 5739102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 52 - 427
Target Start/End: Complemental strand, 5776588 - 5776214
Alignment:
Q  52 aacaatgaatggcttcaagggttatatagtatcagagcatcatggataccggtttataatagaagtgaattttttgttgggatgaatacaactcaaagaa 151  Q
    ||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| ||||||| ||| |||||| ||| ||||||||    
T  5776588 aacaatgaatggcttcaagggttatatagtatcagagaatcattgataccggtttataatagaagtgatttttttgctggaatgaatgcaattcaaagaa 5776489  T
Q  152 gtgaaagcattaattcatttttt-gattcttttgtaaatgcttcaacaaaattgcaagaatttgtgttaaaatttgaaaaaggcgcttgatagccgctta 250  Q
    |||||||| |||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| ||| |||||||||||||||    
T  5776488 gtgaaagctttaattcatttttttgattcttttgtaaatgcttcaacaacattgcaagaatttgtattaaaatttgaaaa-ggctcttgatagccgctta 5776390  T
Q  251 gcggtagaaaaaagagaggattatgaaagtaagcataaaactcggaggtatacaacatggtcagaacttgaggtgcatgttggatctatctatacaagaa 350  Q
      || ||||||||||||||||||||||| |||||||| | |||| |||| ||||||||| ||| ||||||||||||||| ||||||||||||||||||||    
T  5776389 caggcagaaaaaagagaggattatgaaaataagcatacatctcgcaggtttacaacatg-tcaaaacttgaggtgcatgatggatctatctatacaagaa 5776291  T
Q  351 atatattttgtaaatttcaagatgagcttgcgaagatcaataaatttagaagaaagaagattaaaagagaaggagct 427  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  5776290 atatattttgtaaatttcacgatgagcttgcgaagatcaataaatttagaaaaaagaagattaaaagagaaggagct 5776214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 52 - 413
Target Start/End: Complemental strand, 15272165 - 15271805
Alignment:
Q  52 aacaatgaatggcttcaagggttatatagtatcagagcatcatggataccggtttataatagaagtgaattttttgttgggatgaatacaactcaaagaa 151  Q
    ||||||||||||||||||||||||||||  || |||| ||| |||||||| ||||||||||||||    ||||||| |||||||||||||| ||||||||    
T  15272165 aacaatgaatggcttcaagggttatataaaattagagaatcttggataccagtttataatagaagctgtttttttgctgggatgaatacaagtcaaagaa 15272066  T
Q  152 gtgaaagcattaattcattttttgattcttttgtaaatgcttcaacaaaattgcaagaatttgtgttaaaatttgaaaaaggcgcttgatagccgcttag 251  Q
    |||| ||||| ||| | ||||||||||||||||| ||||| || |||| |||||||||||||||||| ||||||| |||||||| |||||||||||||||    
T  15272065 gtgagagcatcaatgcgttttttgattcttttgtgaatgcatctacaacattgcaagaatttgtgttgaaatttg-aaaaggcggttgatagccgcttag 15271967  T
Q  252 cggtagaaaaaagagaggattatgaaagtaagcataaaactcggaggtatacaacatggtcagaacttgaggtgcatgttggatctatctatacaagaaa 351  Q
      |||||||||||||||||||||||||||| ||||||||  || |  |   | ||| ||||| ||||||||| ||||| ||  ||||| ||| | |||||    
T  15271966 aagtagaaaaaagagaggattatgaaagtaggcataaaaaacgcattttggctacagggtcaaaacttgaggagcatgctgcgtctatttattcgagaaa 15271867  T
Q  352 tatattttgtaaatttcaagatgagcttgcgaagatcaataaatttagaagaaagaagatta 413  Q
     || ||| ||||||||||||||||| |   ||||||| | ||||||| || |||||||||||    
T  15271866 catttttggtaaatttcaagatgagatcaggaagatctacaaatttaaaaaaaagaagatta 15271805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 52 - 413
Target Start/End: Original strand, 40874860 - 40875220
Alignment:
Q  52 aacaatgaatggcttcaagggttatatagtatcagagcatcatggataccggtttataatagaagtgaattttttgttgggatgaatacaactcaaagaa 151  Q
    ||||||||||||||||||||||||||||  || |||| ||| |||||||| ||||||||||||||    ||||||| |||||||||||||| ||||||||    
T  40874860 aacaatgaatggcttcaagggttatataaaattagagaatcttggataccagtttataatagaagctgtttttttgctgggatgaatacaagtcaaagaa 40874959  T
Q  152 gtgaaagcattaattcattttttgattcttttgtaaatgcttcaacaaaattgcaagaatttgtgttaaaatttgaaaaaggcgcttgatagccgcttag 251  Q
    |||| ||||| ||| | ||||||||||||||||| ||||| ||||||| |||||||||||||||||| ||||||| |||||||| |||||||||||||||    
T  40874960 gtgagagcatcaatgcgttttttgattcttttgtgaatgcatcaacaacattgcaagaatttgtgttgaaatttg-aaaaggcggttgatagccgcttag 40875058  T
Q  252 cggtagaaaaaagagaggattatgaaagtaagcataaaactcggaggtatacaacatggtcagaacttgaggtgcatgttggatctatctatacaagaaa 351  Q
      |||||||||||||||||||||||||||| ||||||||  || |  |   | ||| ||||| ||||||||| ||||| ||  ||||| ||| | |||||    
T  40875059 aagtagaaaaaagagaggattatgaaagtaggcataaaaaacgcattttggctacagggtcaaaacttgaggagcatgctgcgtctatttattcgagaaa 40875158  T
Q  352 tatattttgtaaatttcaagatgagcttgcgaagatcaataaatttagaagaaagaagatta 413  Q
     || ||| ||||||||||||||||| |   ||||||| | ||||||  || |||||||||||    
T  40875159 catttttggtaaatttcaagatgagatcaggaagatctacaaattttaaaaaaagaagatta 40875220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 59 - 185
Target Start/End: Complemental strand, 7775513 - 7775387
Alignment:
Q  59 aatggcttcaagggttatatagtatcagagcatcatggataccggtttataatagaagtgaattttttgttgggatgaatacaactcaaagaagtgaaag 158  Q
    ||||||||||||| || ||||  || ||||  |||||| ||||  ||||||| ||||||   ||||||| ||||||||| || || ||||||||||| ||    
T  7775513 aatggcttcaaggtttgtataaaataagagagtcatgggtacctatttataacagaagtactttttttgctgggatgaacactacacaaagaagtgagag 7775414  T
Q  159 cattaattcattttttgattcttttgt 185  Q
    ||||||| | ||||||||||| |||||    
T  7775413 cattaatgctttttttgattcgtttgt 7775387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 138; Significance: 6e-72; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 52 - 413
Target Start/End: Original strand, 11326690 - 11327050
Alignment:
Q  52 aacaatgaatggcttcaagggttatatagtatcagagcatcatggataccggtttataatagaagtgaattttttgttgggatgaatacaactcaaagaa 151  Q
    ||||||||||||||||||||||||||||  || |||| ||| |||||||| ||||||||||||||    ||||||| |||||||||||||| ||||||||    
T  11326690 aacaatgaatggcttcaagggttatataaaattagagaatcttggataccagtttataatagaagctgtttttttgctgggatgaatacaagtcaaagaa 11326789  T
Q  152 gtgaaagcattaattcattttttgattcttttgtaaatgcttcaacaaaattgcaagaatttgtgttaaaatttgaaaaaggcgcttgatagccgcttag 251  Q
    |||| ||||| ||| | ||||||||||||||||| ||||| || |||| |||||||||||||||||| ||||||| |||||||| |||||||||||||||    
T  11326790 gtgagagcatcaatgcgttttttgattcttttgtgaatgcatctacaacattgcaagaatttgtgttgaaatttg-aaaaggcggttgatagccgcttag 11326888  T
Q  252 cggtagaaaaaagagaggattatgaaagtaagcataaaactcggaggtatacaacatggtcagaacttgaggtgcatgttggatctatctatacaagaaa 351  Q
      |||||||||||||||||||||||||||| ||||||||  || |  |   | ||| ||||| ||||||||| ||||| ||  ||||| ||| | |||||    
T  11326889 aagtagaaaaaagagaggattatgaaagtaggcataaaaaacgcattttggctacagggtcaaaacttgaggagcatgctgcgtctatttattcgagaaa 11326988  T
Q  352 tatattttgtaaatttcaagatgagcttgcgaagatcaataaatttagaagaaagaagatta 413  Q
     || ||| ||||||||||||||||| |   ||||||| | ||||||| || |||||||||||    
T  11326989 catttttggtaaatttcaagatgagatcaggaagatctacaaatttaaaaaaaagaagatta 11327050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 52 - 413
Target Start/End: Complemental strand, 13223337 - 13222977
Alignment:
Q  52 aacaatgaatggcttcaagggttatatagtatcagagcatcatggataccggtttataatagaagtgaattttttgttgggatgaatacaactcaaagaa 151  Q
    ||||||||||||||||||||||||||||  || |||| ||| |||||||| ||||||||||||||    ||||||| |||||||||||||| ||||||||    
T  13223337 aacaatgaatggcttcaagggttatataaaattagagaatcttggataccagtttataatagaagctgtttttttgctgggatgaatacaagtcaaagaa 13223238  T
Q  152 gtgaaagcattaattcattttttgattcttttgtaaatgcttcaacaaaattgcaagaatttgtgttaaaatttgaaaaaggcgcttgatagccgcttag 251  Q
    |||| ||||| ||| | ||||||||||||||||| ||||| || |||| |||||||||||||||||| ||||||| |||||||| |||||||||||||||    
T  13223237 gtgagagcatcaatgcgttttttgattcttttgtgaatgcatctacaacattgcaagaatttgtgttgaaatttg-aaaaggcggttgatagccgcttag 13223139  T
Q  252 cggtagaaaaaagagaggattatgaaagtaagcataaaactcggaggtatacaacatggtcagaacttgaggtgcatgttggatctatctatacaagaaa 351  Q
      |||||||||||||||||||||||||||| ||||||||  || |  |   | ||| ||||| ||||||||| ||||| ||  ||||| ||| | |||||    
T  13223138 aagtagaaaaaagagaggattatgaaagtaggcataaaaaacgcattttggctacagggtcaaaacttgaggagcatgctgcgtctatttattcgagaaa 13223039  T
Q  352 tatattttgtaaatttcaagatgagcttgcgaagatcaataaatttagaagaaagaagatta 413  Q
     || ||| ||||||||||||||||| |   ||||||| | ||||||| || |||||||||||    
T  13223038 catttttggtaaatttcaagatgagatcaggaagatctacaaatttaaaaaaaagaagatta 13222977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 315 - 427
Target Start/End: Original strand, 17537891 - 17538003
Alignment:
Q  315 aacttgaggtgcatgttggatctatctatacaagaaatatattttgtaaatttcaagatgagcttgcgaagatcaataaatttagaagaaagaagattaa 414  Q
    |||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||  |||||||||||||||||||    
T  17537891 aacttgaggtgcgtgttggatctatctatacaagaaatttattttgtaaatttcaagacgagcttgcgaagatcaataagcttagaagaaagaagattaa 17537990  T
Q  415 aagagaaggagct 427  Q
    |||||||||||||    
T  17537991 aagagaaggagct 17538003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 206 - 319
Target Start/End: Original strand, 17537529 - 17537641
Alignment:
Q  206 aagaatttgtgttaaaatttgaaaaaggcgcttgatagccgcttagcggtagaaaaaagagaggattatgaaagtaagcataaaactcggaggtatacaa 305  Q
    |||||||||||||| |||||||||||| |||||||||||||||||| || ||||||||||||||||| ||||||||| |||||| |||  | || |||||    
T  17537529 aagaatttgtgttacaatttgaaaaag-cgcttgatagccgcttagaggcagaaaaaagagaggattgtgaaagtaaccataaatctcacacgtttacaa 17537627  T
Q  306 catggtcagaactt 319  Q
    |||||||| |||||    
T  17537628 catggtcaaaactt 17537641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 89; Significance: 1e-42; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 52 - 168
Target Start/End: Original strand, 23899180 - 23899296
Alignment:
Q  52 aacaatgaatggcttcaagggttatatagtatcagagcatcatggataccggtttataatagaagtgaattttttgttgggatgaatacaactcaaagaa 151  Q
    |||||||||||||||||| |||||||||||||||||| ||||| |||||||||||||||||||||||| ||||||| |||||||||| ||| ||||||||    
T  23899180 aacaatgaatggcttcaaaggttatatagtatcagagaatcattgataccggtttataatagaagtgatttttttgctgggatgaatgcaattcaaagaa 23899279  T
Q  152 gtgaaagcattaattca 168  Q
    |||||||||||||||||    
T  23899280 gtgaaagcattaattca 23899296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 59 - 230
Target Start/End: Original strand, 52410202 - 52410373
Alignment:
Q  59 aatggcttcaagggttatatagtatcagagcatcatggataccggtttataatagaagtgaattttttgttgggatgaatacaactcaaagaagtgaaag 158  Q
    ||||||||||||| || ||||  || ||||  |||||| ||||  ||||||| ||||||   ||||||| ||||||||| || || ||||||||||| ||    
T  52410202 aatggcttcaaggtttgtataaaataagagagtcatgggtacctatttataacagaagtactttttttgctgggatgaacactacacaaagaagtgagag 52410301  T
Q  159 cattaattcattttttgattcttttgtaaatgcttcaacaaaattgcaagaatttgtgttaaaatttgaaaa 230  Q
    ||||||| | ||||||||||| ||||| ||| | ||||| | | | ||||| |||||  | |||||||||||    
T  52410302 cattaatgctttttttgattcatttgttaattcgtcaactatactacaagattttgtagtgaaatttgaaaa 52410373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 55 - 116
Target Start/End: Complemental strand, 46186416 - 46186355
Alignment:
Q  55 aatgaatggcttcaagggttatatagtatcagagcatcatggataccggtttataatagaag 116  Q
    |||| |||||||||||||||||| |  || |||| ||||||||||||  |||||||||||||    
T  46186416 aatgtatggcttcaagggttatacaagattagagaatcatggataccaatttataatagaag 46186355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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