View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18162_high_13 (Length: 444)
Name: NF18162_high_13
Description: NF18162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18162_high_13 |
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Alignment Details
Target: chr1 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 1 - 435
Target Start/End: Complemental strand, 34176843 - 34176406
Alignment:
| Q |
1 |
cggacccatccgattgcattttctgatgctaa----gatggtaacaatgaagaaacnnnnnnnnctagcttgatgaatttcaaagtctaagaaatagaga |
96 |
Q |
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|||||||||||||||||||||| ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| |
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| T |
34176843 |
cggacccatccgattgcattttgtgatgctaattaagatggtaacaatgaagaaacaaaaaaa-ctagcttgatgaatttcaaagtctatgaaatagaga |
34176745 |
T |
|
| Q |
97 |
tgatattcattgacccaataaagacaagtgtcaaagattgtgacttgtactgcaaaacatagagacagaaacagagaaaggccagaagtgtgtttgtttg |
196 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34176744 |
tgatattcattgacacaataaagacaagtgtcaaagattgtgacttgtactgcaaaacatagagacagaaacagagaaaggccagaagtgtgtttgtttg |
34176645 |
T |
|
| Q |
197 |
tgaaaaaatcagagaaatagggttca-----gttcagttcaggtctgtgttttggatttttctgagtttgttcgtttctctctcttactttccaacattt |
291 |
Q |
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||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
34176644 |
tgaaaaattcagagaaatagggttcagttcggttcagttcaggtctgtgttttggatttttttgagtttgttcgtttctctctcttactttccaacattt |
34176545 |
T |
|
| Q |
292 |
gaagacttttgattaagtcgcagtatttgactctgttctgttcgtgcagctggcatggcagcactttactctttcaatgacagatctctgtttttactct |
391 |
Q |
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|||||||||||||||||||||||| | ||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34176544 |
gaagacttttgattaagtcgcagtttctgattctgttctgttcgtgcagc-----tggcagcactttactctttcaatgacagatctctgtttttactct |
34176450 |
T |
|
| Q |
392 |
cttcatttctgcagttggcttggtactttgctgacaaatctctg |
435 |
Q |
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||||||||||||| |||||||||||||||||||||| ||||||| |
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| T |
34176449 |
cttcatttctgcacttggcttggtactttgctgacagatctctg |
34176406 |
T |
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