View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18162_high_17 (Length: 409)
Name: NF18162_high_17
Description: NF18162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18162_high_17 |
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Alignment Details
Target: chr7 (Bit Score: 153; Significance: 6e-81; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 145 - 329
Target Start/End: Original strand, 33378299 - 33378483
Alignment:
| Q |
145 |
gtgcctaggcgacctgaatgtctatattcaaataccttgggtagcctattttgtttcaaagcacatgatatgaagatactacgatgattttatagaggtt |
244 |
Q |
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| T |
33378299 |
gtgcctaggcgacctgaatgtctatattcaaataccttgggtagcttattttgtttcaaagcacatgatatgaagatactacagtgattttatagagatt |
33378398 |
T |
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| Q |
245 |
gatatcagttaaatgtttttatatctctcactctcaaatgtcagttaaatattgtctcttgctcctcctttgaggtgaactttaa |
329 |
Q |
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| T |
33378399 |
gatatcagttaaatatttttatatctctcactctcaaaaatcagttaaatattgtctcttgctcctcctttgaggcgaactttaa |
33378483 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 19 - 152
Target Start/End: Original strand, 33377265 - 33377398
Alignment:
| Q |
19 |
cctattacatttttcaactattaatctttcattccatcttattgattttgattgaaaccgataacattaaagagaacatggagtaagatgccactttggc |
118 |
Q |
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| T |
33377265 |
cctattacatttttcaactattaatctttcattccatcttattgattttgattgaaaccgattacattaaagagaacatggagtaagatgccactttggc |
33377364 |
T |
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| Q |
119 |
acatcccaaaattgttgattccatgggtgcctag |
152 |
Q |
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| T |
33377365 |
acatcccaaaattgttgattccatgggtgcctag |
33377398 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 326 - 388
Target Start/End: Complemental strand, 2736492 - 2736430
Alignment:
| Q |
326 |
ttaaggggctgtttggttctaaagattgagggaggatggatagcaatatcatggaaagttttc |
388 |
Q |
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| T |
2736492 |
ttaaggggctgtttggttctaaagattgagggaggacaaatagaaatataatggaatgttttc |
2736430 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 330 - 402
Target Start/End: Original strand, 6229877 - 6229949
Alignment:
| Q |
330 |
ggggctgtttggttctaaagattgagggaggatggatagcaatatcatggaaagttttctgcaacctatgctt |
402 |
Q |
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| T |
6229877 |
ggggctgtttggttctaaagattgagggaggatggatagcaatatcatggaaagttttctgcaatctgtgctt |
6229949 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 387
Target Start/End: Complemental strand, 12006092 - 12006040
Alignment:
| Q |
335 |
tgtttggttctaaagattgagggaggatggatagcaatatcatggaaagtttt |
387 |
Q |
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| T |
12006092 |
tgtttggttctaaagattgtgtgaggacagatagcaatattaaggaaagtttt |
12006040 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 64; Significance: 7e-28; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 326 - 393
Target Start/End: Original strand, 53401802 - 53401869
Alignment:
| Q |
326 |
ttaaggggctgtttggttctaaagattgagggaggatggatagcaatatcatggaaagttttctgcaa |
393 |
Q |
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| T |
53401802 |
ttaaggggctgtttggttctaaaaattgagggaggatggatagcaatatcatggaaagttttctgcaa |
53401869 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 82 - 117
Target Start/End: Original strand, 16513698 - 16513733
Alignment:
| Q |
82 |
acattaaagagaacatggagtaagatgccactttgg |
117 |
Q |
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| T |
16513698 |
acattgaagagaacatggagtaagatgccactttgg |
16513733 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 73 - 138
Target Start/End: Complemental strand, 19754234 - 19754169
Alignment:
| Q |
73 |
aaaccgataacattaaagagaacatggagtaagatgccactttggcacatcccaaaattgttgatt |
138 |
Q |
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| T |
19754234 |
aaacagattacattaaagagaacatggagtaagctgccactttggcacatcccaaaattattgatt |
19754169 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 150 - 212
Target Start/End: Complemental strand, 19753295 - 19753234
Alignment:
| Q |
150 |
taggcgacctgaatgtctatattcaaataccttgggtagcctattttgtttcaaagcacatga |
212 |
Q |
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| T |
19753295 |
taggcaacctgaaggtctaaattcaaataccttgggt-gcctattttgtttcatagcacatga |
19753234 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 159 - 224
Target Start/End: Complemental strand, 19753236 - 19753172
Alignment:
| Q |
159 |
tgaatgtctatattcaaataccttgggtagcctattttgtttcaaagcacatgatatgaagatact |
224 |
Q |
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| T |
19753236 |
tgaaggtctaaattcaaataccatgggt-gcctattttgtttcatagcacatgatatgaaaatact |
19753172 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 232 - 271
Target Start/End: Complemental strand, 19753146 - 19753107
Alignment:
| Q |
232 |
ttttatagaggttgatatcagttaaatgtttttatatctc |
271 |
Q |
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| T |
19753146 |
ttttatagaggttgatatgagttaaacgtttttatatctc |
19753107 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 338 - 387
Target Start/End: Complemental strand, 13781979 - 13781930
Alignment:
| Q |
338 |
ttggttctaaagattgagggaggatggatagcaatatcatggaaagtttt |
387 |
Q |
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|||||||||||||||||||||||| ||||| |||||| |||||||||||| |
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| T |
13781979 |
ttggttctaaagattgagggaggacggatatcaatataatggaaagtttt |
13781930 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 387
Target Start/End: Complemental strand, 11943612 - 11943560
Alignment:
| Q |
335 |
tgtttggttctaaagattgagggaggatggatagcaatatcatggaaagtttt |
387 |
Q |
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||||||||||||||||||| | ||||| ||||||||||| | |||||||||| |
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| T |
11943612 |
tgtttggttctaaagattgtgtgaggacagatagcaatattaaggaaagtttt |
11943560 |
T |
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