View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18162_high_19 (Length: 394)
Name: NF18162_high_19
Description: NF18162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18162_high_19 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 301; Significance: 1e-169; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 27 - 392
Target Start/End: Original strand, 38002688 - 38003052
Alignment:
| Q |
27 |
cttactatacaagacacatcccatagtattccattatattccaccaacatcaaaatttaaattcatattgattggcaccctcccccctccttcaaactat |
126 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38002688 |
cttactatacaagacacatcccatagtattccattatattccaccaacatcaaaatttaaattcatattgattggcaccctcccccctccttcaaactat |
38002787 |
T |
|
| Q |
127 |
aaattaaatgttgatgactctcgtaatatcatcattcgcttagctcctcgttctacggtggcttcatctgagattcatttgacagcttcatcaaatgatt |
226 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
38002788 |
aaattaaatgttgatgactctcgtaatatcatcattcgcttagctcctcgttctgcagtgacttcatctgagattcatttgacagcttcatcaaaggatt |
38002887 |
T |
|
| Q |
227 |
ccattgtaatatattggaaccttcattgctatttttactgagctttttgggtct----ttaattcggtattaagcttgcatgtgatcaatgtattacttc |
322 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38002888 |
ccattgtaatatattggaaccttcattgctatttttactgagcttttggggtctttaattaattcggtattaagcttgcatgtgatcaatgtattacttc |
38002987 |
T |
|
| Q |
323 |
tcttatcgtgaattatgattcttagctcatgttattatttagattgtttgtggcacttcaacccacacta |
392 |
Q |
| |
|
|||||||||| ||||||||| ||||||||||||||||||||||||||||| |||||||| |||||| |
|
|
| T |
38002988 |
tcttatcgtggattatgatt-----ctcatgttattatttagattgtttgtggcgcttcaaccaacacta |
38003052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 137
Target Start/End: Complemental strand, 36276057 - 36275938
Alignment:
| Q |
17 |
tatggttcatcttactatacaagacacatcccatagtattccattatattccaccaacatcaaaatttaaattcatattgattggcaccctcccccctcc |
116 |
Q |
| |
|
|||||| ||||||| ||| ||||||||| || |||||| | |||| || || |||||||||||| | ||||||||| |||||||||| ||||||| |
|
|
| T |
36276057 |
tatggtccatcttattatgcaagacacaattcacagtatttctatatactctactaacatcaaaattgagtttcatattgtttggcaccct-gcccctcc |
36275959 |
T |
|
| Q |
117 |
ttcaaactataaattaaatgt |
137 |
Q |
| |
|
||| ||||||||||||||| |
|
|
| T |
36275958 |
ttctttctataaattaaatgt |
36275938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University