View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18162_high_20 (Length: 381)
Name: NF18162_high_20
Description: NF18162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18162_high_20 |
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Alignment Details
Target: chr3 (Bit Score: 165; Significance: 4e-88; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 178 - 358
Target Start/End: Original strand, 49825703 - 49825883
Alignment:
| Q |
178 |
caaaaggagaggacattagatttaatggcacaagcaggaggaccataatcataaaaaccagcaacaccacgataaatcttaaactacggaatataaacaa |
277 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
49825703 |
caaaaggagaggacattagatttaacggcacaagcaggaggaccataatcataaaaaccagcaacaccacgataaatcttaaactacgaaatataaacaa |
49825802 |
T |
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| Q |
278 |
acagcgttcaagggcgttgttaacagattgacgaaaagcttcacgcgaatcggaactggaaccagaaagcagtgattgaag |
358 |
Q |
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| T |
49825803 |
acggcgttcaagcgcgttgttaacagattgacgaaaagcttcacgcgaatcggaactggaaccagaaagcagtgattgaag |
49825883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 4 - 176
Target Start/End: Original strand, 49825101 - 49825274
Alignment:
| Q |
4 |
agatggacatcatcagacacccgcttcacaacttagtcacgccatccatgcttcaagttgccatcagttatctcaactttaaacaannnnnnnn-gtcta |
102 |
Q |
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|||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |
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| T |
49825101 |
agatcgacatcatcagacacccgcttcacaacttagttacgccatccatgcttcaagttgccatcagttatctcgactttaaacaacatttttttgtcta |
49825200 |
T |
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| Q |
103 |
tgaacaaatccagatcagcaggatattcgccattgtaatgttgtgaagagtcacaaattgattcatcagatgtc |
176 |
Q |
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| T |
49825201 |
tgaacaaatccagatcagcaggatattcgccattgtaatgttgtgaagagtcacaaattgattcatcagatgtc |
49825274 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 186 - 304
Target Start/End: Original strand, 49234942 - 49235061
Alignment:
| Q |
186 |
gaggacattagatttaatggcacaagcaggaggaccataatcataaaaaccagcaacaccacgataaatcttaaactacggaatat-aaacaaacagcgt |
284 |
Q |
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|||||| |||||||||| |||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| | ||||||| |||||||| |||| |
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| T |
49234942 |
gaggacgttagatttaacagcacaaccaggaggaccataatcataaaaaccagcaacaccgcgataaatcttaaacgaaggaatataaaacaaacggcgt |
49235041 |
T |
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| Q |
285 |
tcaagggcgttgttaacaga |
304 |
Q |
| |
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||||| |||||||||||| |
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| T |
49235042 |
tcaagaatgttgttaacaga |
49235061 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 184 - 363
Target Start/End: Original strand, 830302 - 830482
Alignment:
| Q |
184 |
gagaggacattagatttaatggcacaagcaggaggaccataatcataaaaaccagcaacaccacgataaatcttaaactacggaatataaacaa-acagc |
282 |
Q |
| |
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||||| ||||| ||||||| || ||| |||| ||||||||||||||||||||||| ||||| | ||||| |||||| ||||||| |||| || || | |
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| T |
830302 |
gagagaacattggatttaaccgcgcaaccaggtggaccataatcataaaaaccagcgacaccgcagtaaattttaaacgacggaatgtaaaaaagacgac |
830401 |
T |
|
| Q |
283 |
gttcaagggcgttgttaacagattgacgaaaagcttcacgcgaatcggaactggaaccagaaagcagtgattgaagcgatt |
363 |
Q |
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| T |
830402 |
gttcaagtgtattaacaacggattgacgaaatgcgtcacgagaatcggagccggaagcagagagaagagattgaagggatt |
830482 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 101; Significance: 6e-50; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 178 - 333
Target Start/End: Original strand, 941817 - 941973
Alignment:
| Q |
178 |
caaaaggagaggacattagatttaatggcacaagcaggaggaccataatcataaaaaccagcaacaccacgataaatcttaaactacggaatat-aaaca |
276 |
Q |
| |
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||||||| ||||| |||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| ||||| |
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| T |
941817 |
caaaaggcaaggacgttagatttaacggcacaaccaggaggaccataatcataaaaaccagcaacaccacgataaatcttaaacgaaggaatataaaaca |
941916 |
T |
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| Q |
277 |
aacagcgttcaagggcgttgttaacagattgacgaaaagcttcacgcgaatcggaac |
333 |
Q |
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||| ||||||||| | |||||||||||||||||||| ||||||||||||||||||| |
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| T |
941917 |
aacggcgttcaagcgtattgttaacagattgacgaaatgcttcacgcgaatcggaac |
941973 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 78; Significance: 3e-36; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 178 - 302
Target Start/End: Complemental strand, 50861736 - 50861611
Alignment:
| Q |
178 |
caaaaggagaggacattagatttaatggcacaagcaggaggaccataatcataaaaaccagcaacaccacgataaatcttaaactacggaatat-aaaca |
276 |
Q |
| |
|
|||||||||||||| |||||||||| ||||||| |||||||||||||||||| ||||||||||||||| ||||||||||||||| ||||||||| ||||| |
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| T |
50861736 |
caaaaggagaggacgttagatttaacggcacaaccaggaggaccataatcattaaaaccagcaacaccgcgataaatcttaaacgacggaatataaaaca |
50861637 |
T |
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| Q |
277 |
aacagcgttcaagggcgttgttaaca |
302 |
Q |
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||| ||||||||| | | |||||||| |
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| T |
50861636 |
aacggcgttcaagcgtgctgttaaca |
50861611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 193 - 307
Target Start/End: Complemental strand, 47934476 - 47934361
Alignment:
| Q |
193 |
ttagatttaatggcacaagcaggaggaccataatcataaaaaccagcaacaccacgataaatcttaaactacggaatat-aaacaaacagcgttcaaggg |
291 |
Q |
| |
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|||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||| ||||| |||||||| ||||||||| | |
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| T |
47934476 |
ttagatttaacaacacaaccaggaggaccataatcataaaaaccagcaacaaagagataaatcttaaacaacgaaatataaaacaaacggcgttcaagcg |
47934377 |
T |
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| Q |
292 |
cgttgttaacagattg |
307 |
Q |
| |
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| ||| ||||||||| |
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| T |
47934376 |
cattgcaaacagattg |
47934361 |
T |
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