View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18162_high_25 (Length: 336)
Name: NF18162_high_25
Description: NF18162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18162_high_25 |
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Alignment Details
Target: chr2 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 20 - 318
Target Start/End: Complemental strand, 41998214 - 41997916
Alignment:
| Q |
20 |
ttgtccacacttaatttggacatgaacaaaatttctggtcccattccaataagtctttttaattctggaataagtgatttaaatttaagccgaaatggtt |
119 |
Q |
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| T |
41998214 |
ttgtccacacttaatttggacatgaacaaaatttctggtcccattccaataagtctttttaattctggaataagtgatttaaatttaagccgaaatggtt |
41998115 |
T |
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| Q |
120 |
tagaagggactatacctgatgtgtttggtgtgagatcttatttcacggttttggatttgagttataatcatcttaagggtcctatacctaaatcaatggg |
219 |
Q |
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| T |
41998114 |
tagaagggactatacctgatgtgtttggtgtgagatcttatttcacggttttggatttgagttataatcatcttaagggtcctatacctaaatcaatggg |
41998015 |
T |
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| Q |
220 |
ttctgcttcttatattggacatttggatttgagttataatcatttgtgtggtaagattcctgttggtgatccttttgatcatttgggagcttcttcttt |
318 |
Q |
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| T |
41998014 |
ttctgcttcttatattggacatttggatttgagttataatcatttgtgtggtaagattcctgttggtgatccttttgatcatttggaagcttcttcttt |
41997916 |
T |
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Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 182 - 271
Target Start/End: Complemental strand, 24781456 - 24781367
Alignment:
| Q |
182 |
tataatcatcttaagggtcctatacctaaatcaatgggttctgcttcttatattggacatttggatttgagttataatcatttgtgtggt |
271 |
Q |
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| T |
24781456 |
tataataatctcaagggtcctatacctaaatctatatcttctgctgcttacattggttacatggatttgagccataatcatttgtgtggt |
24781367 |
T |
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