View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18162_high_26 (Length: 335)
Name: NF18162_high_26
Description: NF18162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18162_high_26 |
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Alignment Details
Target: chr4 (Bit Score: 317; Significance: 1e-179; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 1 - 321
Target Start/End: Original strand, 6006585 - 6006905
Alignment:
| Q |
1 |
tcatccctcaacgatgtattgtgacctaaacgaagagactttaattgagggtattcaacagaattcataggggtataagaattctctacaatccttttcc |
100 |
Q |
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| T |
6006585 |
tcatccctcaacgatgtattgtgacctaaacgaagagactttaattgagggtattcaacagaattcataggggtataagaattctctacaatccttttcc |
6006684 |
T |
|
| Q |
101 |
caatacatgtgtattccattatgacctcactaagtttatcacagttcctaaggagtgcaaacaaggctaaatttgtgaggctatcacatttactaatatt |
200 |
Q |
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| T |
6006685 |
caatacatgtgtattccattatgacctcactaagtttatcacagttcctaaggagtgcaaacaaggctaaatttgtgaggctatcacatttactaatatt |
6006784 |
T |
|
| Q |
201 |
tataaacaccaaatcagcaagaaaccgagacaacttaaggacatgtgaatcattcagaaaatcagcactttgaagatccaaatattgaaaataatgacaa |
300 |
Q |
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| T |
6006785 |
tataaacaccaaatcagcaagaaaccgagacaacttaaggacgtgtgaatcattcagaaaatcagcactttgaagatccaaatattgaaaataatgacaa |
6006884 |
T |
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| Q |
301 |
ttagacaacaagttatagagt |
321 |
Q |
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||||||||||||||||||||| |
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| T |
6006885 |
ttagacaacaagttatagagt |
6006905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 315
Target Start/End: Complemental strand, 1528045 - 1527731
Alignment:
| Q |
1 |
tcatccctcaacgatgtattgtgacctaaacgaagagactttaattgagggtattcaacagaattcataggggtataagaattctctacaatccttttcc |
100 |
Q |
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| T |
1528045 |
tcatccctcaagaatgggttgttagctaaacggagagacttcaattgagggtatacatcaaaatccatcaaggtataagagttctctacgctcattttcc |
1527946 |
T |
|
| Q |
101 |
caatacatgtgtattccattatgacctcactaagtttatcacagttcctaaggagtgcaaacaaggctaaatttgtgaggctatcacatttactaatatt |
200 |
Q |
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| T |
1527945 |
caatagttgtgtattccattttgacgtcacttagtttcacacaattcttaaggagtgcaaacaaggctaaatgtgtgaggctatcacatttactaatgtt |
1527846 |
T |
|
| Q |
201 |
tataaacaccaaatcagcaagaaaccgagacaacttaaggacatgtgaatcattcagaaaatcagcactttgaagatccaaatattgaaaataatgacaa |
300 |
Q |
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|||| ||| ||||||| ||||||| |||||||| || |||||| ||||||||| ||| | | | ||||||||||||||||||||| | | ||||| |
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| T |
1527845 |
tatagacaacaaatcactaagaaacgaagacaactcaatgacatgcaaatcattcataaacttggaattttgaagatccaaatattgaataaattgacac |
1527746 |
T |
|
| Q |
301 |
ttagacaacaagtta |
315 |
Q |
| |
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| T |
1527745 |
tttgacaataagtta |
1527731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 72 - 315
Target Start/End: Complemental strand, 12119082 - 12118838
Alignment:
| Q |
72 |
ggtataagaattctctacaatccttttcccaatacatgtgtattccattatgacctcactaagtttatcacagttcctaaggagtgcaaacaaggctaaa |
171 |
Q |
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|||||| |||||||||| || | ||||||||| ||||||||||||| |||| ||||| |||||| |||||||| ||||||| | |||||||| |||| |
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| T |
12119082 |
ggtatacgaattctctatgctcatcttcccaatagttgtgtattccattttgacgtcacttagtttagcacagttcttaaggagagaaaacaaggataaa |
12118983 |
T |
|
| Q |
172 |
tttgtgagg-ctatcacatttactaatatttataaacaccaaatcagcaagaaaccgagacaacttaaggacatgtgaatcattcagaaaatcagcactt |
270 |
Q |
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| T |
12118982 |
tttgtgagggctatcacatttactaatgtttatagacaacaaatcaccaagaaacaaagacaactcaatgacattccaatcattcataaacttagcattt |
12118883 |
T |
|
| Q |
271 |
tgaagatccaaatattgaaaataatgacaattagacaacaagtta |
315 |
Q |
| |
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||||||||||||||||||| | | ||||| || ||||| |||||| |
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| T |
12118882 |
tgaagatccaaatattgaataaattgacactttgacaataagtta |
12118838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 114 - 283
Target Start/End: Original strand, 547283 - 547452
Alignment:
| Q |
114 |
ttccattatgacctcactaagtttatcacagttcctaaggagtgcaaacaaggctaaatttgtgaggctatcacatttactaatatttataaacaccaaa |
213 |
Q |
| |
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||||||| ||| |||||||||| | |||| || |||| ||||||||||||||||||||||||||| |||| | ||||| ||||||||| ||||| |
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| T |
547283 |
ttccattttgatctcactaagtgaagcacaattactaacgagtgcaaacaaggctaaatttgtgagttgcccacactgactaaggtttataaactccaaa |
547382 |
T |
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| Q |
214 |
tcagcaagaaaccgagacaacttaaggacatgtgaatcattcagaaaatcagcactttgaagatccaaat |
283 |
Q |
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||| |||||||| |||||| | ||| |||||| || | ||| |||| ||||| |||||||||| |||| |
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| T |
547383 |
tcaccaagaaacaaagacaagtcaagaacatgttgattagtcaaaaaaacagcattttgaagatctaaat |
547452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 135
Target Start/End: Original strand, 32267806 - 32267863
Alignment:
| Q |
78 |
agaattctctacaatccttttcccaatacatgtgtattccattatgacctcactaagt |
135 |
Q |
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|||| |||||| | || |||||||||||||||||| ||||||| ||| |||||||||| |
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| T |
32267806 |
agaactctctagactctttttcccaatacatgtgtgttccattttgatctcactaagt |
32267863 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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