View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18162_high_3 (Length: 605)

Name: NF18162_high_3
Description: NF18162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18162_high_3
NF18162_high_3
[»] chr6 (10 HSPs)
chr6 (380-589)||(11165352-11165561)
chr6 (343-599)||(11208364-11208620)
chr6 (343-586)||(11274926-11275169)
chr6 (343-589)||(11169542-11169788)
chr6 (343-587)||(11155263-11155507)
chr6 (343-587)||(11195710-11195954)
chr6 (343-524)||(11242016-11242198)
chr6 (486-587)||(11132124-11132225)
chr6 (94-169)||(2774706-2774782)
chr6 (419-511)||(11315749-11315841)
[»] chr1 (1 HSPs)
chr1 (115-170)||(17493034-17493089)
[»] chr5 (2 HSPs)
chr5 (109-171)||(5672777-5672839)
chr5 (97-171)||(31929608-31929682)


Alignment Details
Target: chr6 (Bit Score: 190; Significance: 1e-103; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 380 - 589
Target Start/End: Original strand, 11165352 - 11165561
Alignment:
Q  380 ttgttctgcaaccttattatcttcaagccacttaaagaccaaatcaagtgcattattgatcttttccttttcttttgacgaaagcttcgagctaacatct 479  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| |||||||||||||||||||||||||||||||||||||||    
T  11165352 ttgttctgcaaccttattatcttcaagccacttaaagaccaaatcaactgcgttattgatattttccttttcttttgacgaaagcttcgagctaacatct 11165451  T
Q  480 ggatcatttatggaatccctcatattgtatgcgtacttctctagtgcatttctcgcttcaaccttcttcctatgccttatgtcttcatctttgtatttct 579  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  11165452 ggatcatttatggaatccctcatattgtatgcgtacctctctagtgcatttctcgcttcaaccttcttcctatgcctcatgtcttcatctttgtatttct 11165551  T
Q  580 cagcttctct 589  Q
    ||||||||||    
T  11165552 cagcttctct 11165561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 343 - 599
Target Start/End: Original strand, 11208364 - 11208620
Alignment:
Q  343 cacttgaaagcatgctgctataatattcaaattcgtattgttctgcaaccttattatcttcaagccacttaaagaccaaatcaagtgcattattgatctt 442  Q
    |||||||||| ||||| |||||| | ||||| || | ||||||| | ||||||||| | ||||||||| | ||||||||||||| ||| |||||||||||    
T  11208364 cacttgaaagaatgctcctataacactcaaaatcttgttgttctactaccttattagcgtcaagccacatgaagaccaaatcaactgcgttattgatctt 11208463  T
Q  443 ttccttttcttttgacgaaagcttcgagctaacatctggatcatttatggaatccctcatattgtatgcgtacttctctagtgcatttctcgcttcaacc 542  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  11208464 ttccttttcttttgacgaaagcttcgagctaacttctggatcatttatggaatccctcatattgtatgcgtacttctctagtgcatttctcgattcaacc 11208563  T
Q  543 ttcttcctatgccttatgtcttcatctttgtatttctcagcttctctgctcctcctc 599  Q
    |||||||||||||| ||||||||||||||||||||||||||||| ||| || |||||    
T  11208564 ttcttcctatgcctcatgtcttcatctttgtatttctcagcttcactgatcatcctc 11208620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 343 - 586
Target Start/End: Original strand, 11274926 - 11275169
Alignment:
Q  343 cacttgaaagcatgctgctataatattcaaattcgtattgttctgcaaccttattatcttcaagccacttaaagaccaaatcaagtgcattattgatctt 442  Q
    |||||||||| ||||| |||||| ||||||| || | |||||||||||||  |||| | ||||||||||||||||||||||||  |||||||||||| ||    
T  11274926 cacttgaaagaatgctcctataacattcaaaatcttgttgttctgcaaccacattaacgtcaagccacttaaagaccaaatcagttgcattattgatgtt 11275025  T
Q  443 ttccttttcttttgacgaaagcttcgagctaacatctggatcatttatggaatccctcatattgtatgcgtacttctctagtgcatttctcgcttcaacc 542  Q
    ||||||||||||| | |||||||||||| ||| ||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11275026 ttccttttcttttaatgaaagcttcgagataatatcgggatcatttatgaaatccctcatattgtatgcgtacttctctagtgcatttctcgcttcaacc 11275125  T
Q  543 ttcttcctatgccttatgtcttcatctttgtatttctcagcttc 586  Q
    || ||||||||||| ||||||||||||||||| |||||||||||    
T  11275126 tttttcctatgcctaatgtcttcatctttgtacttctcagcttc 11275169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 343 - 589
Target Start/End: Original strand, 11169542 - 11169788
Alignment:
Q  343 cacttgaaagcatgctgctataatattcaaattcgtattgttctgcaaccttattatcttcaagccacttaaagaccaaatcaagtgcattattgatctt 442  Q
    |||||||||| ||||| ||||||| |||||| || | |||||||||||||  |||| | ||||||||||||||||||||||||  ||| |||||||| ||    
T  11169542 cacttgaaagaatgctactataatgttcaaaatcttgttgttctgcaaccacattaacgtcaagccacttaaagaccaaatcagttgcgttattgatgtt 11169641  T
Q  443 ttccttttcttttgacgaaagcttcgagctaacatctggatcatttatggaatccctcatattgtatgcgtacttctctagtgcatttctcgcttcaacc 542  Q
    | |||||||||||||||||| ||||||||||| ||| |||||||||||| | ||||||||||||||||||||| ||||||||||||||||||||||||||    
T  11169642 tgccttttcttttgacgaaatcttcgagctaatatccggatcatttatgaattccctcatattgtatgcgtacatctctagtgcatttctcgcttcaacc 11169741  T
Q  543 ttcttcctatgccttatgtcttcatctttgtatttctcagcttctct 589  Q
    |||||||||||||| |||||||||||||||||||| |||||||||||    
T  11169742 ttcttcctatgcctcatgtcttcatctttgtatttgtcagcttctct 11169788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 343 - 587
Target Start/End: Original strand, 11155263 - 11155507
Alignment:
Q  343 cacttgaaagcatgctgctataatattcaaattcgtattgttctgcaaccttattatcttcaagccacttaaagaccaaatcaagtgcattattgatctt 442  Q
    |||||||||| |||||  ||||||| |||||||  | |||||| |||| |   ||| | || |||||| |||||||||||||||||||||||||||||||    
T  11155263 cacttgaaagaatgctcgtataatactcaaattgttcttgttccgcaatcacgttaacatcgagccacgtaaagaccaaatcaagtgcattattgatctt 11155362  T
Q  443 ttccttttcttttgacgaaagcttcgagctaacatctggatcatttatggaatccctcatattgtatgcgtacttctctagtgcatttctcgcttcaacc 542  Q
    |||||||||||||||||||||| || | |||| |||   ||||||||| | || |||||| |||||||| ||| |||||||| ||  ||||||||| |||    
T  11155363 ttccttttcttttgacgaaagcatcaaactaatatccttatcatttatagcattcctcatgttgtatgcatacgtctctagtacaactctcgcttctacc 11155462  T
Q  543 ttcttcctatgccttatgtcttcatctttgtatttctcagcttct 587  Q
    |||||| ||| |||  |||||||||||||||| ||||||||||||    
T  11155463 ttcttcatatacctcttgtcttcatctttgtacttctcagcttct 11155507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 343 - 587
Target Start/End: Original strand, 11195710 - 11195954
Alignment:
Q  343 cacttgaaagcatgctgctataatattcaaattcgtattgttctgcaaccttattatcttcaagccacttaaagaccaaatcaagtgcattattgatctt 442  Q
    |||||||||| |||||  ||||||| |||||||  | |||||| ||||||   ||| | || |||||| | ||||||||||||| ||| |||||||||||    
T  11195710 cacttgaaagaatgctcgtataatactcaaattgttcttgttccgcaaccacgttaacatcgagccacatgaagaccaaatcaattgctttattgatctt 11195809  T
Q  443 ttccttttcttttgacgaaagcttcgagctaacatctggatcatttatggaatccctcatattgtatgcgtacttctctagtgcatttctcgcttcaacc 542  Q
    |||||||||||||||||||||| || | ||||  ||   ||||||||| | || |||||| |||||||| |||||||||| | ||| ||||||||| | |    
T  11195810 ttccttttcttttgacgaaagcatcaaactaatgtccttatcatttatcgcattcctcatgttgtatgcatacttctctaatacatctctcgcttctagc 11195909  T
Q  543 ttcttcctatgccttatgtcttcatctttgtatttctcagcttct 587  Q
    |||||| ||| |||  |||||||||||||||| ||||||||||||    
T  11195910 ttcttcatatacctcttgtcttcatctttgtacttctcagcttct 11195954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 343 - 524
Target Start/End: Complemental strand, 11242198 - 11242016
Alignment:
Q  343 cacttgaaagcatgctgctataatattcaaattcgtattgttctgcaaccttattatcttcaagccacttaaagaccaaatcaagtgcattattgatctt 442  Q
    |||||||||| ||||| |||||| ||||||| ||   ||||||| |||||  |||| | ||||||||  | |||||||||| || ||| ||||| |||||    
T  11242198 cacttgaaagaatgctcctataacattcaaaatctcgttgttcttcaaccacattaacatcaagccatgtgaagaccaaat-aattgctttattaatctt 11242100  T
Q  443 ttccttttct--tttgacgaaagcttcgagctaacatctggatcatttatggaatccctcatattgtatgcgtacttctctagt 524  Q
    |||||||| |  ||| ||||||||||||||| || |||   ||||||||||| || ||| || |||||||| ||||||| ||||    
T  11242099 ttccttttttcgttttacgaaagcttcgagcaaatatccttatcatttatggcattccttatgttgtatgcatacttctttagt 11242016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 486 - 587
Target Start/End: Original strand, 11132124 - 11132225
Alignment:
Q  486 tttatggaatccctcatattgtatgcgtacttctctagtgcatttctcgcttcaaccttcttcctatgccttatgtcttcatctttgtatttctcagctt 585  Q
    ||||||| || |||||| || |||||  ||||||| | ||||||||| | ||| ||||||||||||| | |  |||||||||| ||||| ||||||||||    
T  11132124 tttatggcattcctcatgttatatgcacacttctccaatgcatttcttgtttctaccttcttcctatacatcttgtcttcatccttgtacttctcagctt 11132223  T
Q  586 ct 587  Q
    ||    
T  11132224 ct 11132225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 94 - 169
Target Start/End: Complemental strand, 2774782 - 2774706
Alignment:
Q  94 tagttaactaccgttgaa-gtattttagtcatttctaggtatgtgataacaaatctattagtgtaaacaacaatctt 169  Q
    |||||||||||||||||| ||||||| |||||||  |||| ||  ||| |||||| ||  |||||||||||||||||    
T  2774782 tagttaactaccgttgaaggtattttggtcattttcaggtgtggaatagcaaatcaatcggtgtaaacaacaatctt 2774706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 419 - 511
Target Start/End: Complemental strand, 11315841 - 11315749
Alignment:
Q  419 caaatcaagtgcattattgatcttttccttttcttttgacgaaagcttcgagctaacatctggatcatttatggaatccctcatattgtatgc 511  Q
    |||| ||| ||||| ||||||||||| ||||||||||||| ||||| |  |||||| |||   |||||| |||| |||| |||| ||||||||    
T  11315841 caaaccaattgcatcattgatctttttcttttcttttgacaaaagcataaagctaatatccttatcattaatggcatccttcatcttgtatgc 11315749  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 115 - 170
Target Start/End: Original strand, 17493034 - 17493089
Alignment:
Q  115 ttttagtcatttctaggtatgtgataacaaatctattagtgtaaacaacaatcttc 170  Q
    |||| ||||||||||||| ||||||| ||||||| |||||||||||||||||||||    
T  17493034 ttttggtcatttctaggtgtgtgatagcaaatcttttagtgtaaacaacaatcttc 17493089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 109 - 171
Target Start/End: Original strand, 5672777 - 5672839
Alignment:
Q  109 gaagtattttagtcatttctaggtatgtgataacaaatctattagtgtaaacaacaatcttca 171  Q
    |||||||||| |||||||  || ||||||||||||||||| |||||||||| |||||||||||    
T  5672777 gaagtattttggtcattttcagatatgtgataacaaatcttttagtgtaaataacaatcttca 5672839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 97 - 171
Target Start/End: Original strand, 31929608 - 31929682
Alignment:
Q  97 ttaactaccgttgaagtattttagtcatttctaggtatgtgataacaaatctattagtgtaaacaacaatcttca 171  Q
    ||||||| |||| |||||||||  |||||| || || | |||||| |||||| ||||||||||||||||| ||||    
T  31929608 ttaactatcgttaaagtattttgatcatttttatgtgtatgataataaatcttttagtgtaaacaacaattttca 31929682  T

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