View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18162_high_38 (Length: 240)
Name: NF18162_high_38
Description: NF18162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18162_high_38 |
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Alignment Details
Target: chr5 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 38003154 - 38003375
Alignment:
| Q |
1 |
tcaatttgatataatagggtatggtatccttatattagctccttagtcttttgtagtatacttttctcatgaaaaatagaaaatcttcaacaatgcaaaa |
100 |
Q |
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| T |
38003154 |
tcaatttgatataatggggtatggtatccttatattacctccttagtcttttgtagtatacttttctcatgaaaaatagaaaatcttcaacaatgcaaaa |
38003253 |
T |
|
| Q |
101 |
tttcatcaattaagagcttcttcacccctccttgtcatttggttcagtaagatcattcgcacgcatagactccatacttggaacaattgggttagtaaca |
200 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |
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| T |
38003254 |
tttcatcaactaagagcttcttcacccctccttgtcatttggttcagtaagatcattcgcacacatagactccatacttggagcaattgggttagtaaca |
38003353 |
T |
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| Q |
201 |
aaagaattatcttgctccccta |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
38003354 |
aaagaattatcttgctccccta |
38003375 |
T |
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