View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18162_high_43 (Length: 222)
Name: NF18162_high_43
Description: NF18162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18162_high_43 |
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Alignment Details
Target: chr3 (Bit Score: 174; Significance: 9e-94; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 14 - 187
Target Start/End: Original strand, 1389332 - 1389505
Alignment:
| Q |
14 |
aaacgatggtgacttgggaggagagagagacaaatctctcccaggtacatctttggatcgtaaaccatccatttttaactcaacccttttgttgtataat |
113 |
Q |
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| T |
1389332 |
aaacgatggtgacttgggaggagagagagacaaatctctcccaggtacatctttggatcgtaaaccatccatttttaactcaacccttttgttgtataat |
1389431 |
T |
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| Q |
114 |
gttggtgaggtcattcttagcttaaactcagatgggttgtcttggaaatcggtggagcctttggaaaatgtatg |
187 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1389432 |
gttggtgaggtcattcttagcttaaactcagatgggttgtcttggaaatcggtggagcctttggaaaatgtatg |
1389505 |
T |
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