View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18162_high_7 (Length: 489)

Name: NF18162_high_7
Description: NF18162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18162_high_7
NF18162_high_7
[»] chr2 (3 HSPs)
chr2 (160-321)||(41997574-41997733)
chr2 (396-489)||(41997833-41997926)
chr2 (33-128)||(41997479-41997574)


Alignment Details
Target: chr2 (Bit Score: 143; Significance: 6e-75; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 160 - 321
Target Start/End: Original strand, 41997574 - 41997733
Alignment:
Q  160 catatcaatagattgaacatttgtatttatatgttagaccaaatgtttaaaacaagaacttgccgagaatcccgcagcattgtttgacaaccaaaaatcc 259  Q
    ||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41997574 catatcactagattgaacatttgtatttatatgtgagaccaaatgtttaaaacaagaacttgccgagaatcccgcagcattgtttgacaaccaaaaatcc 41997673  T
Q  260 acactaaattcagtatcttaattattgtaacatatgtaagatatcatgatcatgatgaaaat 321  Q
    ||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41997674 acac--aattcagtatcttaattattgtaacatatgtaagatatcatgatcatgatgaaaat 41997733  T

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Target: chr2; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 396 - 489
Target Start/End: Original strand, 41997833 - 41997926
Alignment:
Q  396 tttcaacacacaagaagagtaagtttgtttaattaacaccacaaggtttaagtggcttcccacaaagacaatcattgtaaacaaaagaagaagc 489  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41997833 tttcaacacacaagaagagtaagtttgtttaattaacaccacaaggtttaagtggcttcccacaaagacaatcattgtaaacaaaagaagaagc 41997926  T

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Target: chr2; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 33 - 128
Target Start/End: Original strand, 41997479 - 41997574
Alignment:
Q  33 ggacattacccctcttttgagcaaatgtctctagttgctattcttcctttaagtaatacccaaactataaccttagctttagatgaaacgtaaatc 128  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| ||||||    
T  41997479 ggacattacccctcttttgagcaaatgtctctagttgctattcttcctttaagtaatcctcaaactataaccttagctttagatgaaacataaatc 41997574  T

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