View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18162_low_10 (Length: 457)
Name: NF18162_low_10
Description: NF18162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18162_low_10 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 344; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 1 - 457
Target Start/End: Complemental strand, 49209490 - 49209033
Alignment:
| Q |
1 |
atgaagtagaggttccaaacttccaattccattgtcagtacatttctctctttttgttcnnnnnnnagaggtgatttcttcttgttcttnnnnnnntata |
100 |
Q |
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| T |
49209490 |
atgaagtagaggttccaaacttccaattccattgtcagtacatttctctctttttgttctttttttagaggtgatttcttcttgttcttaaaaaaatata |
49209391 |
T |
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| Q |
101 |
tttaagaatttaattagtatactcttatgcaattatttttacatttatgaataggattttaatttatgtggcctaattaaactcatgatttaatggtaaa |
200 |
Q |
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| T |
49209390 |
tttaataatttaattagtatactcttatgcaattatttttacattcatgaataggattttaatttatgtggcctaattaaactcatgatttaatgttaaa |
49209291 |
T |
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| Q |
201 |
atatataatcaatgaaattggatggacannnnnnnnnnnnnnnn-cggataggatggtttttgccctgagaataagtcaaataagatcctataaataaga |
299 |
Q |
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| T |
49209290 |
atatataatcaatgaaattggatggacatttttttatttttttttcggataggatggtttttgccctgagaataagtcaaataagatcctataaataaga |
49209191 |
T |
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| Q |
300 |
tcctacaacaaattcactagttataataaggaataagaacacagtcacttcgtccgcaaacgattatcacaattctttagcttcaattttcttattctag |
399 |
Q |
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| T |
49209190 |
tcctacaacaaattcactagctataataaggaataagaacacagtcacttcgtccgcaaacgattatcacaattctttagcttcaattttcttattctag |
49209091 |
T |
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| Q |
400 |
cttctcgaattcaaaccattatcaacatgtaccgggtagcaaaggcatcagaatacct |
457 |
Q |
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| T |
49209090 |
cttctcgaattcaaaccattatcaacatgtaccgggtagcaaaggcatcagaatacct |
49209033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 381 - 454
Target Start/End: Complemental strand, 49213950 - 49213876
Alignment:
| Q |
381 |
ttcaattttcttattctagcttctcgaa-ttcaaaccattatcaacatgtaccgggtagcaaaggcatcagaata |
454 |
Q |
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| T |
49213950 |
ttcaattttcttattctcgtttttctaaattcaaaccaaaatcaacatgtaccgggtagcaaaagcatcagaata |
49213876 |
T |
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