View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18162_low_15 (Length: 440)
Name: NF18162_low_15
Description: NF18162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18162_low_15 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 296; Significance: 1e-166; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 423
Target Start/End: Original strand, 1893032 - 1893458
Alignment:
| Q |
1 |
acaaaaatctgtgcctacagagttggaaaagtgcgtcgaagctgtccaaagcaagacatctagaaccgagcacaaggcaacattcacatgaaagcagttc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| |||||||||||| |
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|
| T |
1893032 |
acaaaaatctgtgcctacagagttggaaaagtgcgtcgaagctgtccaaaacaagacatctagaaacgagcacaaggcaacattcac-tgaaagcagttc |
1893130 |
T |
|
| Q |
101 |
gtccaccccttctggtatgtctatcataagcagtagagaatttgtccaccaaatcattcattgcactacaggaagaca--tatcag-aataagagcattt |
197 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | || |||||||| | |
|
|
| T |
1893131 |
gtccaccccttctggtatgtctatcataagcagtagagaatttgtccaccaaatcattcattgcactacaggaagacaggtatatgaaaaaagagcatgt |
1893230 |
T |
|
| Q |
198 |
attaat---aacacattgatacaatacaaggttaaaattctgaactgaaataacattcaagttccttagttttgaaaaaatattcacatatctcatggaa |
294 |
Q |
| |
|
|||||| ||||||| |||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| |||| |
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|
| T |
1893231 |
attaataacaacacatggatacaatacaaagttaaaattctgaactgaaattgcattcaagttccttagttttgaaaatatattcacatatctcacggaa |
1893330 |
T |
|
| Q |
295 |
aatgttacgcaacacacctaatccacccatccacatatttctactaattttttcacaaaaattataatcgtgagaaaaagataaaagacacggaaataag |
394 |
Q |
| |
|
||||||||||||||||||| || | ||||| |||||||||||||||||||||||||||||||||| || ||||||||||||||| || | ||||||||| |
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|
| T |
1893331 |
aatgttacgcaacacacct-atactaccatcaacatatttctactaattttttcacaaaaattatattcatgagaaaaagataaaggatatggaaataag |
1893429 |
T |
|
| Q |
395 |
gatgttgtgatgcatccattcaatgacct |
423 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
1893430 |
gatgttgtgatgcatccattcaatgacct |
1893458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 423
Target Start/End: Original strand, 1899949 - 1900353
Alignment:
| Q |
1 |
acaaaaatctgtgcctacagagttggaaaagtgcgtcgaagctgtccaaagcaagacatctagaaccgagcacaaggcaacattcacatgaaagcagttc |
100 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
1899949 |
acaaaaatctgtgcctatagagttggaaaagtgcgtcgaagctgtccaaaacaagacatctagaaacgagcacaaggcaacattcacatgaaagcagttc |
1900048 |
T |
|
| Q |
101 |
gtccaccccttctggtatgtctatcataagcagtagagaatttgtccaccaaatcattcattgcactacaggaagacatatcagaataagagcatttatt |
200 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
1900049 |
gcccaccccttctggtatgtctatcataagcagtagagaatttgtccaccaaatcattcattgcactacaggaagacatatcagaaaaagagcatttatt |
1900148 |
T |
|
| Q |
201 |
aataacacattgatacaatacaaggttaaaattctgaactgaaataacattcaagttccttagttttgaaaaaatattcacatatctcatggaaaatgtt |
300 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
1900149 |
aataacacatggatacaatacaaggttaaaattctgaactgaaataacattcaagtt-cggagttttgaaaaaatattcatatatctcatggaaaatgtt |
1900247 |
T |
|
| Q |
301 |
acgcaacacacctaatccacccatccacatatttctactaattttttcacaaaaattataatcgtgagaaaaagataaaagacacggaaataaggatgtt |
400 |
Q |
| |
|
|||| || || ||||||| ||||| ||||||||||||| ||||||| || ||||||||||||||||||||||||||||||||| || |
|
|
| T |
1900248 |
acgc--caaacataatcca-ccatcaacatatttctact--------------aattatattcatgagaaaaagataaaagacacggaaataaggatatt |
1900330 |
T |
|
| Q |
401 |
gtgatgcatccattcaatgacct |
423 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
1900331 |
gtgatgcatccattcaatgacct |
1900353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 423
Target Start/End: Original strand, 1909395 - 1909799
Alignment:
| Q |
1 |
acaaaaatctgtgcctacagagttggaaaagtgcgtcgaagctgtccaaagcaagacatctagaaccgagcacaaggcaacattcacatgaaagcagttc |
100 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
1909395 |
acaaaaatctgtgcctatagagttggaaaagtgcgtcgaagctgtccaaaacaagacatctagaaacgagcacaaggcaacattcacatgaaagcagttc |
1909494 |
T |
|
| Q |
101 |
gtccaccccttctggtatgtctatcataagcagtagagaatttgtccaccaaatcattcattgcactacaggaagacatatcagaataagagcatttatt |
200 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
1909495 |
gcccaccccttctggtatgtctatcataagcagtagagaatttgtccaccaaatcattcattgcactacaggaagacatatcagaaaaagagcatttatt |
1909594 |
T |
|
| Q |
201 |
aataacacattgatacaatacaaggttaaaattctgaactgaaataacattcaagttccttagttttgaaaaaatattcacatatctcatggaaaatgtt |
300 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
1909595 |
aataacacatggatacaatacaaggttaaaattctgaactgaaataacattcaagtt-cggagttttgaaaaaatattcatatatctcatggaaaatgtt |
1909693 |
T |
|
| Q |
301 |
acgcaacacacctaatccacccatccacatatttctactaattttttcacaaaaattataatcgtgagaaaaagataaaagacacggaaataaggatgtt |
400 |
Q |
| |
|
|||| || || ||||||| ||||| ||||||||||||| ||||||| || ||||||||||||||||||||||||||||||||| || |
|
|
| T |
1909694 |
acgc--caaacataatcca-ccatcaacatatttctact--------------aattatattcatgagaaaaagataaaagacacggaaataaggatatt |
1909776 |
T |
|
| Q |
401 |
gtgatgcatccattcaatgacct |
423 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
1909777 |
gtgatgcatccattcaatgacct |
1909799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 423
Target Start/End: Complemental strand, 2935363 - 2934958
Alignment:
| Q |
1 |
acaaaaatctgtgcctacagagttggaaaagtgcgtcgaagctgtccaaagcaagacatctagaaccgagca-caaggcaacattcacatgaaagcagtt |
99 |
Q |
| |
|
|||||||| |||||||||||||| |||||||||| |||||||||||||||||||||||||||||| |||||| |||||| |||||||||||||||||||| |
|
|
| T |
2935363 |
acaaaaatttgtgcctacagagtgggaaaagtgcatcgaagctgtccaaagcaagacatctagaaacgagcaacaaggcgacattcacatgaaagcagtt |
2935264 |
T |
|
| Q |
100 |
cgtccaccccttctggtatgtctatcataagcagtagagaatttgtccaccaaatcattcattgcactacaggaagac--atatcag-aataagagcatt |
196 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || | || || |||||||| |
|
|
| T |
2935263 |
cgtccaccccttctggtatgtctatcataagcagtagagaatttgtccaccaaat----cattgcactacaggaagacagatttaagaaaaaagagcatg |
2935168 |
T |
|
| Q |
197 |
tattaat--aacacattgatacaatacaaggttaaaattctgaactgaaataacattcaagttccttagttttgaaaaaatattcacatatctcatggaa |
294 |
Q |
| |
|
||||||| ||||||| |||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
2935167 |
tattaatacaacacatggatacaatacaaagttaaaattctgaactgaaattgcattcaagttccttagttttgaaaatatattcacatatctcatggaa |
2935068 |
T |
|
| Q |
295 |
aatgttacgcaacacacctaatccacccatccacatatttctactaattttttcacaaaaattataatcgtgagaaaaagataaaagacacggaaataag |
394 |
Q |
| |
|
||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||| || | ||||||||| |
|
|
| T |
2935067 |
aatgttacgcaacacacctaatcca-ccatcaacatatttctactaatt------------------tcgtgagaaaaagataacggatatggaaataag |
2934987 |
T |
|
| Q |
395 |
gatgttgtgatgcatccattcaatgacct |
423 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
2934986 |
gatgttgtgatgcatccattcaatgacct |
2934958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 103 - 423
Target Start/End: Original strand, 1902579 - 1902904
Alignment:
| Q |
103 |
ccaccccttctggtatgtctatcataagcagtagagaatttgtccaccaaatcattcattgcactacaggaagaca--tatcagaataa-gagcatttat |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| || |||||| ||| |
|
|
| T |
1902579 |
ccaccccttctggtatgtctatcataagcagtagagaatttgtccaccaaatcattcattgcactacaggaagacaggtatatgaaaaaagagcatgtat |
1902678 |
T |
|
| Q |
200 |
taataaca---cattgatacaatacaaggttaaaattctgaactgaaataacattcaagttccttagttttgaaaaaatattcacatatctcatggaaaa |
296 |
Q |
| |
|
|||||||| ||| |||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| |||||| |
|
|
| T |
1902679 |
taataacaacacatggatacaatacaaagttaaaattctgaactgaaattgcattcaagttccttagttttgaaaatatattcacatatctcacggaaaa |
1902778 |
T |
|
| Q |
297 |
tgttacgcaacacacctaatccacccatccacatatttctactaattttttcacaaaaattataatcgtgagaaaaagataaaagacacggaaataagga |
396 |
Q |
| |
|
||||||||||||||||| || | ||||| |||||||||||||||||||||||||||||||||| || ||||||||||||||| || | ||||||||||| |
|
|
| T |
1902779 |
tgttacgcaacacacct-atactaccatcaacatatttctactaattttttcacaaaaattatattcatgagaaaaagataaaggatatggaaataagga |
1902877 |
T |
|
| Q |
397 |
tgttgtgatgcatccattcaatgacct |
423 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
1902878 |
tgttgtgatgcatccattcaatgacct |
1902904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 2930311 - 2930198
Alignment:
| Q |
1 |
acaaaaatctgtgcctacagagttggaaaagtgcgtcgaagctgtccaaagcaagacatctagaaccgagc-acaaggcaacattcacatgaaagcagtt |
99 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| |
|
|
| T |
2930311 |
acaaaaatctgtgcctacagagttggaaacgtgcgtcgaagctgtccaaagcaagacatctagaaacgagcaacaaggcaacattcacatgaaagcagtt |
2930212 |
T |
|
| Q |
100 |
cgtccaccccttct |
113 |
Q |
| |
|
||||||||||||| |
|
|
| T |
2930211 |
tgtccaccccttct |
2930198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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