View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18162_low_16 (Length: 439)
Name: NF18162_low_16
Description: NF18162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18162_low_16 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 7 - 422
Target Start/End: Complemental strand, 34958404 - 34957984
Alignment:
| Q |
7 |
tggatccctccaactaatctgaaattgtagcttttctaaaatggtagctaattgatcaacccttttttgtgcattccttccaatgactctcaacctatca |
106 |
Q |
| |
|
||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
34958404 |
tggatccctccaactgatcagaaattgtagcttttctaaaatggtagctaattgatcaacccttttttgtgcattcctgccaatgactctcaacctatca |
34958305 |
T |
|
| Q |
107 |
tacctctttctcaaatcttcacctccagtttgagttggaaagaaatcaagttcttcttctaaatcatcagaatttgttgtatcagcaccagataat---- |
202 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34958304 |
tacctccttctcaaatcttcacctccagtttgagttggaaagaaatcaagttcttcttctaaatcatcagaatttgttgtatcagcaccagataatataa |
34958205 |
T |
|
| Q |
203 |
-gttgcatctatgtgataaggatgctcatgcttcttgaaattataatcatccaaaccaatcttgaaaagatagaaactcaccaaaggtatcattggctct |
301 |
Q |
| |
|
||||||||||||||| |||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34958204 |
tgttgcatctatgtgacaaggatgctcatgctttttgaaattataattatccaaaccaatcttgaaaagatagaaactcaccaaaggtatcattggctct |
34958105 |
T |
|
| Q |
302 |
ggatacaaaagcacacataagcaaaaaatatgaaaaagcactgtttcaccaagttcaacatttttgtggattcttgcagcaccaagaagcgccccccaaa |
401 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
34958104 |
ggatacaaaagcacacataagcaaaaaatatgaaaaagcactgtttcaccaagttcaacatttttgtggattcttgcagcaccaagaagcgcccctcaaa |
34958005 |
T |
|
| Q |
402 |
cggatccatcagcttcaaatg |
422 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
34958004 |
cggatccatcagcttcaaatg |
34957984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 280; Significance: 1e-156; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 6 - 349
Target Start/End: Original strand, 3922241 - 3922584
Alignment:
| Q |
6 |
ttggatccctccaactaatctgaaattgtagcttttctaaaatggtagctaattgatcaacccttttttgtgcattccttccaatgactctcaacctatc |
105 |
Q |
| |
|
|||||||||||||||| ||| || |||||||||||||||||||||| || |||| |||||||||||||||| ||||||| |||||||||||||||||||| |
|
|
| T |
3922241 |
ttggatccctccaactgatcagagattgtagcttttctaaaatggtggccaattcatcaacccttttttgtccattcctaccaatgactctcaacctatc |
3922340 |
T |
|
| Q |
106 |
atacctctttctcaaatcttcacctccagtttgagttggaaagaaatcaagttcttcttctaaatcatcagaatttgttgtatcagcaccagataatgtt |
205 |
Q |
| |
|
||||||| ||||||||| |||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
3922341 |
atacctccttctcaaatgttcacctccaatttgagttggaaagaaaacaagttcttcttctaaatcatcataatttgttgtatcagcaccagataatgtt |
3922440 |
T |
|
| Q |
206 |
gcatctatgtgataaggatgctcatgcttcttgaaattataatcatccaaaccaatcttgaaaagatagaaactcaccaaaggtatcattggctctggat |
305 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3922441 |
gcatctatgtgacaaggatgctcatgcttcttgaaattataattatccaaaccaatcttgaaaagatagaaactcaccaaaggtatcattggctctggat |
3922540 |
T |
|
| Q |
306 |
acaaaagcacacataagcaaaaaatatgaaaaagcactgtttca |
349 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
3922541 |
acaaaagcacacataagcaaaaaatatgaaaaagcactgcttca |
3922584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 347 - 422
Target Start/End: Original strand, 50131576 - 50131651
Alignment:
| Q |
347 |
tcaccaagttcaacatttttgtggattcttgcagcaccaagaagcgccccccaaacggatccatcagcttcaaatg |
422 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
50131576 |
tcaccaagttcaacatttttgtggattcttgcagcaccaagaagcgccccccaaacggatccatcggcttcaaatg |
50131651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University