View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18162_low_2 (Length: 733)
Name: NF18162_low_2
Description: NF18162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18162_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 668; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 668; E-Value: 0
Query Start/End: Original strand, 1 - 721
Target Start/End: Original strand, 29058669 - 29059389
Alignment:
| Q |
1 |
tctctacgaaacctaacgagtgaacgacgcgtttcagcatagcctgcaattcaaagttatacaatctagatgtttcatcatattctatcattaggtgatg |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
29058669 |
tctctacgaaacctaacgagtgaacgacgcgtttcagcatagcctgcaattcaaagttatacaatctagatgtttcatcatattctatcataaggtgatg |
29058768 |
T |
|
| Q |
101 |
ttaggtagaaggtctaacgttggctatgtcaatagtatttaaagactgattcttaatatactatggccggccgttttatgatttaatatttctcattaaa |
200 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29058769 |
ttaggtagaaggtgtaacgttggctatgtcaatagtatttaaagactgattcttagtatactatggccggccgttttatgatttaatatttctcattaaa |
29058868 |
T |
|
| Q |
201 |
tgttgtgaagatgataccaatgctttgaacatgtgaagacaaagggaaatgaatggctttttgttgcagtcttatgagatgagaacaaatttcatcatag |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
29058869 |
tgttgtgaagatgataccaatgctttgaacatgtgaagacaaagggaaatgaatggctttttgttgtagtcttatgagatgagaacaaatttcatcatag |
29058968 |
T |
|
| Q |
301 |
aatggataagaaggaatcaagtaatttcctcaatattaactccatggtttgggatttggatttggtgcagtaactgcatcaagcagttttcgatctcgac |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
29058969 |
aatggataagaaggaatcaagtaatttcctcaatattaactccatggtttgggatttggatttggtgcagtaactgcgtcaagcagttttcgatctcgac |
29059068 |
T |
|
| Q |
401 |
cgttcaatctcaaattaacagccgagatcgtttaaaactgattttgttaatgcgtaatataaaccgtccgatctcagattaactgccaatatcctttact |
500 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29059069 |
cgttcaatctcaaattaacagccgagatcatttaaaactgattttgttaatgcgtaatataaaccgtccgatctcagattaactgccaatatcctttact |
29059168 |
T |
|
| Q |
501 |
gcatagaaatgtgtggttttcttgctgcggggaatctgcgtccatggtttgatactatgctagctctgcagacacattcttgtactaggatcatactccc |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
29059169 |
gcatagaaatgtgtggttttcttgctgcggggaatctgcgtccatggtttgatactatgctagctctgcagacacattcttgtactaggatcatactccc |
29059268 |
T |
|
| Q |
601 |
ataaacctgacaaaacttggcgcgtaagtttctttagccttccactgatccaattattgtgaataatatagcatccnnnnnnnaaacatgtttctttgac |
700 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| ||||||| |
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| T |
29059269 |
ataaacctgacaaaacttggcgcgtaagtttctttagccttccactgatccaattattgtgaataatgtagcatcctttttttaaacatgttgctttgac |
29059368 |
T |
|
| Q |
701 |
ggttttatcttgccacaggtt |
721 |
Q |
| |
|
||||||||||||||||||||| |
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| T |
29059369 |
ggttttatcttgccacaggtt |
29059389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 348 - 421
Target Start/End: Original strand, 33554223 - 33554296
Alignment:
| Q |
348 |
tttgggatttggatttggtgcagtaactgcatcaagcagttttcgatctcgaccgttcaatctcaaattaacag |
421 |
Q |
| |
|
|||||||||||||||||||||||||| || ||| ||||||||||||||| || || | ||||||||||||||| |
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|
| T |
33554223 |
tttgggatttggatttggtgcagtaattgtgtcacgcagttttcgatctcaactgtccgatctcaaattaacag |
33554296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 3e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 352 - 483
Target Start/End: Complemental strand, 23713590 - 23713459
Alignment:
| Q |
352 |
ggatttggatttggtgcagtaactgcatcaagcagttttcgatctcgaccgttcaatctcaaattaacagccgagatcgtttaaaactgattttgttaat |
451 |
Q |
| |
|
|||||||||||| ||||||||||| ||||| | ||||||| | ||| || |||||||||||| ||||||| ||||||| ||| ||||||||||||||| | |
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| T |
23713590 |
ggatttggattttgtgcagtaactacatcacgtagttttcaacctcaacagttcaatctcaagttaacagtcgagatctttttaaactgattttgttatt |
23713491 |
T |
|
| Q |
452 |
gcgtaatataaaccgtccgatctcagattaac |
483 |
Q |
| |
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| ||||| | ||| |||| ||||||||||||| |
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|
| T |
23713490 |
gtgtaatctgaactgtccaatctcagattaac |
23713459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 1e-18; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 580 - 676
Target Start/End: Complemental strand, 2244040 - 2243944
Alignment:
| Q |
580 |
ttgtactaggatcatactcccataaacctgacaaaacttggcgcgtaagtttctttagccttccactgatccaattattgtgaataatatagcatcc |
676 |
Q |
| |
|
|||| |||||||||||||||| ||| ||||||||||||||||||| |||||| || |||||| ||||||||||| ||||||||||| || ||||| |
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| T |
2244040 |
ttgtgctaggatcatactcccgtaagcctgacaaaacttggcgcgcaagtttattaagcctttgactgatccaatagttgtgaataatgtaacatcc |
2243944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 352 - 504
Target Start/End: Original strand, 33151630 - 33151782
Alignment:
| Q |
352 |
ggatttggatttggtgcagtaactgcatcaagcagtttt-cgatctcgaccgttcaatctcaaattaacagccgagatcgtttaaaactgattttgttaa |
450 |
Q |
| |
|
|||||| ||||||||||| ||||||||||| | ||||| ||||||| ||| |||| ||||||| |||||||||||||||||||| ||||||| |
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| T |
33151630 |
ggatttagatttggtgcattaactgcatcacacggtttttcgatctcaaccacctgatcttaaattaatgtccgagatcgtttaaaactga-tttgttat |
33151728 |
T |
|
| Q |
451 |
tgcgtaatataaaccgtccgatctcagattaactgccaatatcctttactgcat |
504 |
Q |
| |
|
|| ||||| |||||| |||||| ||| || ||| ||||||||| ||||| |||| |
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| T |
33151729 |
tgtgtaatttaaaccctccgatttcatatgaacggccaatatcatttaccgcat |
33151782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.000000000001; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 405 - 467
Target Start/End: Original strand, 50488178 - 50488240
Alignment:
| Q |
405 |
caatctcaaattaacagccgagatcgtttaaaactgattttgttaatgcgtaatataaaccgt |
467 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| |||||||| || || ||||| |||||||| |
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|
| T |
50488178 |
caatctcaaattaacagtcgagatcgtttaaaattgattttggtattgtgtaatgtaaaccgt |
50488240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 383 - 476
Target Start/End: Original strand, 20770183 - 20770276
Alignment:
| Q |
383 |
gcagttttcgatctcgaccgttcaatctcaaattaacagccgagatcgtttaaaactgattttgttaatgcgtaatataaaccgtccgatctca |
476 |
Q |
| |
|
|||||||| ||||| ||||||| ||||||||||||| | |||||| |||| || |||||||||||| || ||||| | || |||||||||||| |
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|
| T |
20770183 |
gcagttttgcatctcaaccgttcgatctcaaattaacggacgagattgtttcaagctgattttgttattgggtaatctgaatcgtccgatctca |
20770276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 360 - 458
Target Start/End: Original strand, 25552053 - 25552150
Alignment:
| Q |
360 |
atttggtgcagtaactgcatcaagcagttttcgatctcgaccgttcaatctcaaattaacagccgagatcgtttaaaactgattttgttaatgcgtaat |
458 |
Q |
| |
|
||||||||||||| ||| ||| |||| |||| ||||| ||||| | ||||||||||||||| |||||| |||| ||||||||||| || |||||||| |
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|
| T |
25552053 |
atttggtgcagtatttgcgtcatgcagatttcaatctcaaccgtccgatctcaaattaacagtcgagatagttt-aaactgattttaatattgcgtaat |
25552150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 389 - 500
Target Start/End: Original strand, 32854797 - 32854908
Alignment:
| Q |
389 |
ttcgatctcgaccgttcaatctcaaattaacagccgagatcgtttaaaactgattttgttaatgcgtaatataaaccgtccgatctcagattaactgcca |
488 |
Q |
| |
|
||||||||| ||| | | || ||||||||||||| |||||||||| || || |||||| || || | ||||||| | ||| |||||||||||||| | || |
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|
| T |
32854797 |
ttcgatctcaaccatccgatatcaaattaacagctgagatcgtttgaagctaattttgatattgtgaaatataagctgtcagatctcagattaacggtca |
32854896 |
T |
|
| Q |
489 |
atatcctttact |
500 |
Q |
| |
|
| ||| |||||| |
|
|
| T |
32854897 |
agatcgtttact |
32854908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 358 - 448
Target Start/End: Complemental strand, 17940313 - 17940223
Alignment:
| Q |
358 |
ggatttggtgcagtaactgcatcaagcagttttcgatctcgaccgttcaatctcaaattaacagccgagatcgtttaaaactgattttgtt |
448 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||||| ||||| |||| |||||| ||||||| | ||||| ||| |||||||| ||||| |
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| T |
17940313 |
ggatttggtgcagtaactgcgtcacgcagttttcaatctcatccgtgtgatctcagattaacaatcaagatccttttaaactgatcttgtt |
17940223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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