View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18162_low_25 (Length: 337)
Name: NF18162_low_25
Description: NF18162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18162_low_25 |
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Alignment Details
Target: chr1 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 20 - 325
Target Start/End: Complemental strand, 51910350 - 51910045
Alignment:
| Q |
20 |
caattcctatcaagggcattcctgcccttttgtccatagacctgtcttataataatctcagcctgggaagtgtacctgattggatcagaagcagggaact |
119 |
Q |
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| T |
51910350 |
caattcctatcaagggcattcctgcccttttgtccatagacctgtcttataataatctcagcctgggaagtgtacctgattggatcagaagcagggaact |
51910251 |
T |
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| Q |
120 |
taaagacgtgcgtttagccgggtgtaaattgaagggagatcttccacaattcaccagaccagactctttgagctccatagacctatcagagaactgcctg |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51910250 |
taaagacgtgcgtttagccgggtgtaaattgaagggagatcttccacaattcaccagaccagactctttgagctccatagacctatcagagaactgcctg |
51910151 |
T |
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| Q |
220 |
gttgatggtatttcaaacttcttcacaaatatgtcaagtttgcaagaggtcaagctctcaaacaaccagttgaggtttgacatttctaaaataaaattgc |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51910150 |
gttgatggtatttcaaacttcttcacaaatatgtcaagtttgcaagaggtcaagctctcaaacaaccagttgaggtttgacatttctaaaataaaattgc |
51910051 |
T |
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| Q |
320 |
catctg |
325 |
Q |
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|||||| |
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| T |
51910050 |
catctg |
51910045 |
T |
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