View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18162_low_28 (Length: 320)
Name: NF18162_low_28
Description: NF18162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18162_low_28 |
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Alignment Details
Target: chr7 (Bit Score: 149; Significance: 1e-78; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 1 - 149
Target Start/End: Complemental strand, 21477521 - 21477373
Alignment:
| Q |
1 |
ctatgttgcagtgtatgttggagagaaaatgacaccgtttgtatcccaatatcatacttgaaaacaggcatctagagaatttgtttcctattgattaagc |
100 |
Q |
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| T |
21477521 |
ctatgttgcagtgtatgttggagagaaaatgacaccgtttgtatcccaatatcatacttgaaaacaggcatctagagaatttgtttcctattgattaagc |
21477422 |
T |
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| Q |
101 |
atcaaaaagttctattaaccataacataacaagcgtctgaagcacaatt |
149 |
Q |
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| T |
21477421 |
atcaaaaagttctattaaccataacataacaagcgtctgaagcacaatt |
21477373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 150 - 302
Target Start/End: Complemental strand, 21477347 - 21477189
Alignment:
| Q |
150 |
ctctaattaagaattataaacttaacctaaacaagctataaatcaattgagtaaa------ataaaattgcacaaaacgaaattatatatgatcaattgc |
243 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
21477347 |
ctctaattaagaattataaacttaacctaaacaagctataaatcaattgagtaaactatcaataaaattgcacaaaacgaaattatatatgatcaattgc |
21477248 |
T |
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| Q |
244 |
gtcataagataaaccgaattgcacaagaattaacaggaaataaaccacaaaacgaaaaa |
302 |
Q |
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| T |
21477247 |
gtcataagataaaccgaattgcacaagaattaacaagaaataaaccacaaaacgaaaaa |
21477189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 8 - 62
Target Start/End: Complemental strand, 27513917 - 27513862
Alignment:
| Q |
8 |
gcagtgtatgttggagagaaaatgacaccgtttgt-atcccaatatcatacttgaa |
62 |
Q |
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| T |
27513917 |
gcagtgtatgtaggagagaaaatgaagcggtttgtgatcccaatatcatacttgaa |
27513862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 59
Target Start/End: Original strand, 27501316 - 27501368
Alignment:
| Q |
8 |
gcagtgtatgttggagagaaaatgacaccgtttgt-atcccaatatcatactt |
59 |
Q |
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||||| |||||||||||| |||||| || |||||| ||||||||||||||||| |
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| T |
27501316 |
gcagtatatgttggagaggaaatgaaacggtttgtgatcccaatatcatactt |
27501368 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 27508844 - 27508876
Alignment:
| Q |
1 |
ctatgttgcagtgtatgttggagagaaaatgac |
33 |
Q |
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|||||||||||||||||||||||||||| |||| |
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| T |
27508844 |
ctatgttgcagtgtatgttggagagaaactgac |
27508876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 134
Target Start/End: Original strand, 33319520 - 33319569
Alignment:
| Q |
85 |
ttcctattgattaagcatcaaaaagttctattaaccataacataacaagc |
134 |
Q |
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| T |
33319520 |
ttcctattgattaagcataacaaagttcaattaatcataacaaaacaagc |
33319569 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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