View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18162_low_3 (Length: 719)
Name: NF18162_low_3
Description: NF18162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18162_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 625; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 625; E-Value: 0
Query Start/End: Original strand, 13 - 701
Target Start/End: Complemental strand, 37999488 - 37998801
Alignment:
| Q |
13 |
cacagacacctgatccaaattaagcaatttatttgatttagaaaaaa-ttctaaaacaagataagatagtatttgaccttttatgttgtaatcaaattca |
111 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37999488 |
cacagacacctgatccaaattaagcaatttatttgatttagaaaaaaattctaaaacaagataagatagtatttgaccttttatgttgtaatcaaattca |
37999389 |
T |
|
| Q |
112 |
atgtctttgacttgacccctcattcattaacattgctcccacatatttttagtcctaataattgtgtttaacattgctccgacaacaaaatattttggga |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
37999388 |
atgtctttgacttgacccctcattcattaacattgctcccacatatttttagtcctaataattatgtttaacattgctccgacaacaaaatattttggga |
37999289 |
T |
|
| Q |
212 |
cactttctgcacgagttttccaacacgtgtagaacaagtgtcacatgagtgtctgatatgcgacaggcctgatattaaaaggtgtttgtgcttcatagtt |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37999288 |
cactttctgcacgagttttccaacacgtgtagaacaagtgtcacatgagtgtctgatatgcgacaggcctgatattaaaaggtgtttgtgcttcatagtt |
37999189 |
T |
|
| Q |
312 |
atctacttctagtgttaccttgattttgcatctgactagggatagcagtgagactgtattattccttaaatttgtattaaagaggagaatctttaatgat |
411 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
37999188 |
atctacttctagtgttaccttgattttgcatctgactagggatagcagtgagactgtattattccttaaatttgtattaaagaggagaatcttcaatgat |
37999089 |
T |
|
| Q |
412 |
tcatcacctcctagttttcttgctacacatattttttcctcttttaagaatgtttgtgaccttgtggtgcatgtgcttgtttcctgttcacnnnnnnnct |
511 |
Q |
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| T |
37999088 |
tcatcacctcctagttttgttgctacacatattttttcctc-tttaagaatgtttgtgaccttgtggtgcatgtgcttgtttcctgttcactttttttct |
37998990 |
T |
|
| Q |
512 |
ttccaattgatcaagcatgtgctttttaatccggctagcaaaatttatatacatgactgatttatcctttgaaaggataaatatagaactgtgtagtacc |
611 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
37998989 |
ttccaattgatcaagcatgtgctttttaatccggctagcaaaaattatatacatgactgatttatcctttgaaaggataaatatagaact-tgtagtacc |
37998891 |
T |
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| Q |
612 |
aacattacttattaaaagtgtgatgactgtcctgtagattacataaaattacttcaattctttacaaattattattggtgtcgatgtatc |
701 |
Q |
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| T |
37998890 |
aacattacttattaaaagtgtgatgactgtcctgtagattacataaaattacttcaattctttagaaattattattggtgtcgatgtatc |
37998801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 92
Target Start/End: Complemental strand, 44650109 - 44650046
Alignment:
| Q |
29 |
aaattaagcaatttatttgatttagaaaaaattctaaaacaagataagatagtatttgaccttt |
92 |
Q |
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||||| |||||||||||| ||| | |||||||| |||||||||||| |||| ||||||||||| |
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| T |
44650109 |
aaattgagcaatttatttcattgaaaaaaaattataaaacaagataccatagaatttgaccttt |
44650046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 92
Target Start/End: Complemental strand, 4748215 - 4748159
Alignment:
| Q |
35 |
agcaatttatttgatttagaaaaaattctaaaacaagataagatagtatttgaccttt |
92 |
Q |
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| T |
4748215 |
agcaatttatttcattg-gaaaaagttctaaaacaagttacgatagtatttgaccttt |
4748159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 92
Target Start/End: Original strand, 9929658 - 9929714
Alignment:
| Q |
35 |
agcaatttatttgatttagaaaaaattctaaaacaagataagatagtatttgaccttt |
92 |
Q |
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|||||||||||| ||| ||||||| ||||| ||||||||| |||||||||||||||| |
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| T |
9929658 |
agcaatttatttcatt-agaaaaagttctacaacaagatatcatagtatttgaccttt |
9929714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 92
Target Start/End: Complemental strand, 16661312 - 16661256
Alignment:
| Q |
35 |
agcaatttatttgatttagaaaaaattctaaaacaagataagatagtatttgaccttt |
92 |
Q |
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|||||||||||| ||| | ||||| ||||||||||||||| |||||||||| |||||| |
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| T |
16661312 |
agcaatttattttattaa-aaaaagttctaaaacaagataggatagtatttaaccttt |
16661256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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