View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18162_low_30 (Length: 302)
Name: NF18162_low_30
Description: NF18162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18162_low_30 |
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Alignment Details
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 23 - 295
Target Start/End: Original strand, 53788661 - 53788934
Alignment:
| Q |
23 |
agcacgccgtcaaaacacattgatagaaagactttcaacacaaa-aaccgatcaaattcttattaaatcatgatgtaagataccacctttgtgtcaagat |
121 |
Q |
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| T |
53788661 |
agcacgccatcaaaacactgtgatagaaagactttcaacacaaagaaccgatcaaattcttattaaatcatcatgtaagataccacctttgcaaaaagat |
53788760 |
T |
|
| Q |
122 |
ggggagtccggaggatcatcctcctcgtgacccaacacttttgaatctccttacacgttcgctccacccacacatctaggcctttttgtatgattcatca |
221 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53788761 |
ggggagtccggaggattatcctcctcgtgacccaacacttttgaatctccttacacgttcgctccacccacacatctaggcctttttgtatgattcatca |
53788860 |
T |
|
| Q |
222 |
ataccatactatgtcatttgattgtcgtcttctttttattctattattccaatatacttctctcattcatttca |
295 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
53788861 |
ataccataccatgtcatttgattgtcgtcttctttttattctattattccactatacttctctcattcatttca |
53788934 |
T |
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