View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18162_low_34 (Length: 285)

Name: NF18162_low_34
Description: NF18162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18162_low_34
NF18162_low_34
[»] chr4 (12 HSPs)
chr4 (19-266)||(50250605-50250852)
chr4 (194-266)||(50669237-50669309)
chr4 (204-245)||(48852849-48852890)
chr4 (201-245)||(48903120-48903164)
chr4 (194-245)||(48705237-48705288)
chr4 (194-232)||(7773696-7773734)
chr4 (210-264)||(49040984-49041038)
chr4 (194-231)||(7771553-7771590)
chr4 (194-231)||(7790238-7790275)
chr4 (201-234)||(48898893-48898926)
chr4 (201-234)||(49044055-49044088)
chr4 (210-266)||(48863421-48863477)
[»] chr6 (2 HSPs)
chr6 (194-266)||(21979465-21979537)
chr6 (204-246)||(21015992-21016034)
[»] chr8 (3 HSPs)
chr8 (202-239)||(12195484-12195521)
chr8 (202-239)||(12439912-12439949)
chr8 (200-234)||(15349038-15349072)
[»] chr1 (1 HSPs)
chr1 (201-266)||(24367327-24367392)
[»] chr7 (1 HSPs)
chr7 (194-245)||(48883984-48884036)


Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 19 - 266
Target Start/End: Complemental strand, 50250852 - 50250605
Alignment:
Q  19 atgaccactcaacagatgattatttggtggtttcaatatcctatcatccttatgattataatgattcatcacatttggagnnnnnnncattgagaaataa 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||    
T  50250852 atgaccactcaacagatgattatttggtggtttcaatatcctatcatccttatgattataatgattcatcacatttggagtttttttcattgagaaataa 50250753  T
Q  119 tatctggaaacaaattgaaattgagggtacacacttagcttatatgaattccactttggatcctcgtagcaagcgaggggttctctttaatggggctatt 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50250752 tatctggaaacaaattgaaattgagggtacacacttagcttatatgaattccactttggatcctcgtagcaagcgaggggttctctttaatggggctatt 50250653  T
Q  219 cattggttggcttttccttatgatttattggtctatgttattgttgcc 266  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||    
T  50250652 cattggttggcttttcgttatgatttattggtctatgttattgttgcc 50250605  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 194 - 266
Target Start/End: Original strand, 50669237 - 50669309
Alignment:
Q  194 aggggttctctttaatggggctattcattggttggcttttccttatgatttattggtctatgttattgttgcc 266  Q
    ||||||||||||||||| ||||||| ||||||||||||||| ||||||||||  ||| | ||| |||||||||    
T  50669237 aggggttctctttaatgaggctatttattggttggcttttcgttatgatttaaaggtgtttgtcattgttgcc 50669309  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 204 - 245
Target Start/End: Original strand, 48852849 - 48852890
Alignment:
Q  204 tttaatggggctattcattggttggcttttccttatgattta 245  Q
    ||||||||||||||||||||||||||||||| | ||||||||    
T  48852849 tttaatggggctattcattggttggcttttcgtcatgattta 48852890  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 201 - 245
Target Start/End: Original strand, 48903120 - 48903164
Alignment:
Q  201 ctctttaatggggctattcattggttggcttttccttatgattta 245  Q
    |||||||||||||||||||||| ||||||||||| | ||||||||    
T  48903120 ctctttaatggggctattcattagttggcttttcatcatgattta 48903164  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 194 - 245
Target Start/End: Complemental strand, 48705288 - 48705237
Alignment:
Q  194 aggggttctctttaatggggctattcattggttggcttttccttatgattta 245  Q
    |||||| |||| |||||||||||||||||||||||||| || | ||||||||    
T  48705288 aggggtgctctataatggggctattcattggttggcttatcgtcatgattta 48705237  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 232
Target Start/End: Complemental strand, 7773734 - 7773696
Alignment:
Q  194 aggggttctctttaatggggctattcattggttggcttt 232  Q
    |||| |||| |||||||||||||||||||||||||||||    
T  7773734 agggtttctatttaatggggctattcattggttggcttt 7773696  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 210 - 264
Target Start/End: Complemental strand, 49041038 - 49040984
Alignment:
Q  210 ggggctattcattggttggcttttccttatgatttattggtctatgttattgttg 264  Q
    ||||||||||||||||||||||||| | ||||| |||  || |||||||||||||    
T  49041038 ggggctattcattggttggcttttcgtcatgatatatgtgtttatgttattgttg 49040984  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 231
Target Start/End: Original strand, 7771553 - 7771590
Alignment:
Q  194 aggggttctctttaatggggctattcattggttggctt 231  Q
    |||| |||| ||||||||||||||||||||||||||||    
T  7771553 agggtttctatttaatggggctattcattggttggctt 7771590  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 231
Target Start/End: Original strand, 7790238 - 7790275
Alignment:
Q  194 aggggttctctttaatggggctattcattggttggctt 231  Q
    |||| |||| ||||||||||||||||||||||||||||    
T  7790238 agggtttctatttaatggggctattcattggttggctt 7790275  T

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Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 234
Target Start/End: Original strand, 48898893 - 48898926
Alignment:
Q  201 ctctttaatggggctattcattggttggcttttc 234  Q
    |||| |||||||||||||||||||||||||||||    
T  48898893 ctctataatggggctattcattggttggcttttc 48898926  T

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Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 234
Target Start/End: Complemental strand, 49044088 - 49044055
Alignment:
Q  201 ctctttaatggggctattcattggttggcttttc 234  Q
    |||||||||||||||||||| |||||||||||||    
T  49044088 ctctttaatggggctattcactggttggcttttc 49044055  T

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Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 210 - 266
Target Start/End: Original strand, 48863421 - 48863477
Alignment:
Q  210 ggggctattcattggttggcttttccttatgatttattggtctatgttattgttgcc 266  Q
    ||||||||||||||||||||||||| | ||||| ||   || |||||||||||||||    
T  48863421 ggggctattcattggttggcttttcgtcatgatataggtgtttatgttattgttgcc 48863477  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 194 - 266
Target Start/End: Complemental strand, 21979537 - 21979465
Alignment:
Q  194 aggggttctctttaatggggctattcattggttggcttttccttatgatttattggtctatgttattgttgcc 266  Q
    ||||||| |||||||| ||||||||||||||||| ||||||  ||||||||||  || | |||||||||||||    
T  21979537 aggggttttctttaatagggctattcattggttgacttttcggtatgatttatctgtgtttgttattgttgcc 21979465  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 204 - 246
Target Start/End: Original strand, 21015992 - 21016034
Alignment:
Q  204 tttaatggggctattcattggttggcttttccttatgatttat 246  Q
    ||||||||||||||||||||||||||||||| | |||||||||    
T  21015992 tttaatggggctattcattggttggcttttcgtcatgatttat 21016034  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 202 - 239
Target Start/End: Original strand, 12195484 - 12195521
Alignment:
Q  202 tctttaatggggctattcattggttggcttttccttat 239  Q
    |||||||||||||||||||||||||||||| |||||||    
T  12195484 tctttaatggggctattcattggttggcttctccttat 12195521  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 202 - 239
Target Start/End: Original strand, 12439912 - 12439949
Alignment:
Q  202 tctttaatggggctattcattggttggcttttccttat 239  Q
    |||||||||||||||||||||||||||||| |||||||    
T  12439912 tctttaatggggctattcattggttggcttctccttat 12439949  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 234
Target Start/End: Original strand, 15349038 - 15349072
Alignment:
Q  200 tctctttaatggggctattcattggttggcttttc 234  Q
    ||||| |||||||||||||||||||||||||||||    
T  15349038 tctctataatggggctattcattggttggcttttc 15349072  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 266
Target Start/End: Original strand, 24367327 - 24367392
Alignment:
Q  201 ctctttaatggggctattcattggttggcttttccttatgatttattggtctatgttattgttgcc 266  Q
    |||||| ||||||||||||| |||||| |||||| ||||||| ||   ||| ||||||||||||||    
T  24367327 ctctttcatggggctattcactggttgacttttcgttatgatatacgtgtcaatgttattgttgcc 24367392  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 245
Target Start/End: Original strand, 48883984 - 48884036
Alignment:
Q  194 aggggttctctttaatggggctattcattggttgg-cttttccttatgattta 245  Q
    |||| ||| ||||||||||||||||||||||||||  ||||| ||||||||||    
T  48883984 agggtttccctttaatggggctattcattggttggttttttcgttatgattta 48884036  T

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