View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18162_low_43 (Length: 233)
Name: NF18162_low_43
Description: NF18162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18162_low_43 |
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Alignment Details
Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 14 - 216
Target Start/End: Complemental strand, 49543603 - 49543401
Alignment:
| Q |
14 |
cagagattgcataaagaaggccaagtttttagaaggagaagcttcataaatgttgaaaacttcttagaaatccatactcttttcatatcagccaaagttt |
113 |
Q |
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| T |
49543603 |
cagagattgcataaagaaggccaagtttttagaaggagaagcttcataaatgttgaaaacttcttagaaatccatactcttttcatatcagccaaagttt |
49543504 |
T |
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| Q |
114 |
ttgactcatccatactcagtcattagccaaaattgaacaacaaaaattgattgttaataattgaataataggaaacaagtaggactggttgaaaaatggt |
213 |
Q |
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| T |
49543503 |
ttgactcatccatactcagtcattaaccaaaattgaacaataaaaattgattgttaataattgaataataggaaacaagtaggactggttgaaaaatggt |
49543404 |
T |
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| Q |
214 |
ttt |
216 |
Q |
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||| |
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| T |
49543403 |
ttt |
49543401 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 14 - 216
Target Start/End: Complemental strand, 47609362 - 47609164
Alignment:
| Q |
14 |
cagagattgcataaagaaggccaagtttttagaaggagaagcttcataaatgttg-aaaacttcttagaaatccatactcttttcatatcagccaaagtt |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
47609362 |
cagagattgcataaagaaggccaagtttttagaaggagaagcttcataaatgtaggaaaacttcttagaaatccatactctcttcatatcagccaaagtt |
47609263 |
T |
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| Q |
113 |
tttgactcatccatactcagtcattagccaaaattgaacaacaaaaattga-ttgttaataattgaataataggaaacaagtaggactggttgaaaaatg |
211 |
Q |
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||||||||||| | ||||||| |||||| |||||||||||||| | ||||||||||| ||||||||||||||||||||||| |||||||||||| |
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| T |
47609262 |
tttgactcatc------ctgtcattaatcaaaatcgaacaacaaaaatttatttgttaataatcgaataataggaaacaagtaggaccggttgaaaaatg |
47609169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 117; Significance: 9e-60; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 14 - 216
Target Start/End: Original strand, 52892727 - 52892924
Alignment:
| Q |
14 |
cagagattgcataaagaaggccaagtttttagaaggagaagcttcataaatgttg-aaaacttcttagaaatccatactcttttcatatcagccaaagtt |
112 |
Q |
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|||||||||||||| ||||||||| || |||||||| ||||||||||||||| | |||| |||||||||||||||||||| |||||||||||||||||| |
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| T |
52892727 |
cagagattgcataatgaaggccaacttggtagaaggacaagcttcataaatgtaggaaaatttcttagaaatccatactctcttcatatcagccaaagtt |
52892826 |
T |
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| Q |
113 |
tttgactcatccatactcagtcattagccaaaattgaacaacaaaaattgattgttaataattgaataataggaaacaagtaggactggttgaaaaatgg |
212 |
Q |
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|| ||||||||| ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
52892827 |
ttcgactcatcct------gtcattaaccaaaattgaacaacaaaaattgattgttaataaccaaataataggaaacaagtaggactggttgaaaaatgg |
52892920 |
T |
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