View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18162_low_5 (Length: 525)
Name: NF18162_low_5
Description: NF18162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18162_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 322; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 15 - 376
Target Start/End: Original strand, 33160293 - 33160655
Alignment:
| Q |
15 |
gatgttttgaagaaaaagagatgccattaaggcacccacaaaagcagatagtatatagactataccaatccttactgcaaattaaaaacaaaacgtcata |
114 |
Q |
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| T |
33160293 |
gatgttttgaagaaaaagagatgccattaaggcacccacaaaagcagatagtatatagactataccaatccttactgcaaattaaaaacaaaacgtcata |
33160392 |
T |
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| Q |
115 |
aattctaataacaagaaagcatttcaatatgcaannnnnnn-caatttgcatctataaagcagagaacggtggacacaactctaacacatcgacaccgat |
213 |
Q |
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| T |
33160393 |
aattctaataacaagaaagcatttcaatatgcaattttttttcaatttgcatctataaagcagagaacggtggacacaactctaacgcatcgacaccgat |
33160492 |
T |
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| Q |
214 |
aatattttgagaaaataaatcctttgaatgtatccacatgcgtcagtctcgtgtcggacaccaaacatgccttcaatacgcaatgtcattgctacatagc |
313 |
Q |
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| T |
33160493 |
aatattttgagaaaataaatcctttgaatgtagccacatgcgtcagtctcgtgtcggacaccaaacatgccttcaatacgcaatgtcattgctacatagc |
33160592 |
T |
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| Q |
314 |
tttgcatcatttcaatcaattggacttatgcagcaccaaccgattaaatgtgtatccggtgtc |
376 |
Q |
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| T |
33160593 |
tttgcatcatttcaatcaattggacttatgcagcaccaaccgattaaatgtgcatccggtgtc |
33160655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 462 - 509
Target Start/End: Original strand, 33160735 - 33160782
Alignment:
| Q |
462 |
tatctatgtgtcgtgtccggtgtttgtgttagtagaaaacctagaaac |
509 |
Q |
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| T |
33160735 |
tatctatgtgtcgtgtccggtgtttgtgttagtagaaaacctagaaac |
33160782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 192 - 229
Target Start/End: Complemental strand, 25635166 - 25635129
Alignment:
| Q |
192 |
actctaacacatcgacaccgataatattttgagaaaat |
229 |
Q |
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||||||||| |||||||||||||||||||||| ||||| |
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| T |
25635166 |
actctaacatatcgacaccgataatattttgataaaat |
25635129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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