View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18162_low_50 (Length: 203)
Name: NF18162_low_50
Description: NF18162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18162_low_50 |
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Alignment Details
Target: chr4 (Bit Score: 108; Significance: 2e-54; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 34946735 - 34946554
Alignment:
| Q |
1 |
atgctgtttcgctcaaggtatatatcatacaacagttagcatgatgccnnnnnnnnnnnnnnnnnnnnnaattacatctaatactctatgaaccgatatt |
100 |
Q |
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| T |
34946735 |
atgctgtttcgctcaaggtatatatcatacaacagttagcatgatgcctttttttttgtttgttttt--aattacatctaatactatatgaaccgatatt |
34946638 |
T |
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| Q |
101 |
tcagattgaaaatgtattacatcgatacatgtgtttattatatttaatcattttgtttattcaaattgttggaaatcaagtgtg |
184 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34946637 |
tcagattgaaagtgtattacatcgatacatgtgtttattatatttaatcattttgtttattcaaattgttggaaatcaagtgtg |
34946554 |
T |
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