View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18162_low_6 (Length: 512)

Name: NF18162_low_6
Description: NF18162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18162_low_6
NF18162_low_6
[»] chr2 (5 HSPs)
chr2 (2-297)||(23394274-23394569)
chr2 (348-409)||(10375776-10375837)
chr2 (11-50)||(16117902-16117941)
chr2 (131-164)||(43302300-43302333)
chr2 (359-403)||(25291570-25291614)
[»] chr6 (2 HSPs)
chr6 (302-455)||(12797934-12798086)
chr6 (302-455)||(22495230-22495381)
[»] chr4 (6 HSPs)
chr4 (352-412)||(51466116-51466176)
chr4 (348-409)||(21191541-21191602)
chr4 (131-164)||(40946270-40946303)
chr4 (359-403)||(43523913-43523957)
chr4 (131-164)||(55970188-55970221)
chr4 (2-58)||(23359188-23359244)
[»] chr8 (2 HSPs)
chr8 (348-409)||(11630076-11630137)
chr8 (131-164)||(24848912-24848945)
[»] chr1 (12 HSPs)
chr1 (2-127)||(42401016-42401142)
chr1 (3-59)||(37583034-37583090)
chr1 (10-58)||(44850021-44850069)
chr1 (365-403)||(44520847-44520885)
chr1 (10-118)||(42483696-42483805)
chr1 (10-50)||(20558604-20558644)
chr1 (11-58)||(46487063-46487110)
chr1 (347-393)||(35363562-35363607)
chr1 (131-164)||(15457125-15457158)
chr1 (2-50)||(32474210-32474259)
chr1 (10-50)||(17349824-17349864)
chr1 (2-58)||(27544458-27544514)
[»] chr7 (3 HSPs)
chr7 (2-125)||(9486796-9486920)
chr7 (74-127)||(4998950-4999003)
chr7 (131-164)||(30224695-30224728)
[»] chr3 (2 HSPs)
chr3 (2-63)||(40485073-40485134)
chr3 (2-112)||(52393672-52393784)
[»] chr5 (5 HSPs)
chr5 (6-60)||(4747055-4747109)
chr5 (3-118)||(38037389-38037505)
chr5 (343-403)||(11888891-11888952)
chr5 (161-206)||(4747189-4747234)
chr5 (11-59)||(1309753-1309801)
[»] scaffold0272 (1 HSPs)
scaffold0272 (161-227)||(5205-5271)
[»] scaffold0102 (1 HSPs)
scaffold0102 (161-214)||(24182-24235)


Alignment Details
Target: chr2 (Bit Score: 195; Significance: 1e-106; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 2 - 297
Target Start/End: Original strand, 23394274 - 23394569
Alignment:
Q  2 catcattcttttataattttttaataacaaaacctaataagcactcaatcgctccaatgaagcacctgtagcaaagttctaaatgagttccatcaataac 101  Q
    |||||||||||||||||||||||||||||| | | |||||||||||||||||||||||||||||||| || | |||||||||||| ||  ||||||||||    
T  23394274 catcattcttttataattttttaataacaatatcaaataagcactcaatcgctccaatgaagcacctctaacgaagttctaaatgggtctcatcaataac 23394373  T
Q  102 tcttcatcatttacattctaacaataacttatttatttaagacactattatctattttataatgaaaagtattgttggatccacttaagaatgagatgct 201  Q
    ||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||    
T  23394374 tctccatcatttacattctaacaataacatatttatttaagacactattatctattttataatgacaagtattgttggatccacttaagaatgggatgct 23394473  T
Q  202 taagtgaaaccctgagttttttaaaacccctnnnnnnnttctctccattgaagtacctattaaatactgggtcttaatggttaagaccttaaaaat 297  Q
    ||| ||| | |||||||||||||||||||||       ||||||||||||||||||||||||||||  || ||||||||||||||||||| |||||    
T  23394474 taaatgagatcctgagttttttaaaacccctaaaaaatttctctccattgaagtacctattaaatatcggatcttaatggttaagaccttgaaaat 23394569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 348 - 409
Target Start/End: Original strand, 10375776 - 10375837
Alignment:
Q  348 ccccatgtggtagggacaattttgtccattaacaaaaaataagggataaatttgtcatacaa 409  Q
    |||||||||| |||||||||||||||||| |||||||||||||||||||||||||| |||||    
T  10375776 ccccatgtggcagggacaattttgtccatcaacaaaaaataagggataaatttgtcctacaa 10375837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 11 - 50
Target Start/End: Original strand, 16117902 - 16117941
Alignment:
Q  11 tttataattttttaataacaaaacctaataagcactcaat 50  Q
    ||||||||||||||||| ||| ||||||||||||||||||    
T  16117902 tttataattttttaatatcaatacctaataagcactcaat 16117941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 131 - 164
Target Start/End: Complemental strand, 43302333 - 43302300
Alignment:
Q  131 tatttatttaagacactattatctattttataat 164  Q
    ||||||||||||||| ||||||||||||||||||    
T  43302333 tatttatttaagacattattatctattttataat 43302300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 359 - 403
Target Start/End: Complemental strand, 25291614 - 25291570
Alignment:
Q  359 agggacaattttgtccattaacaaaaaataagggataaatttgtc 403  Q
    |||| |||||||||||||| |||||||| ||||| ||||||||||    
T  25291614 aggggcaattttgtccattcacaaaaaagaagggttaaatttgtc 25291570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 122; Significance: 2e-62; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 302 - 455
Target Start/End: Original strand, 12797934 - 12798086
Alignment:
Q  302 agtgatagacaaaccgccttatgtggcatactaccatttcatacacccccatgtggtagggacaattttgtccattaacaaaaaataagggataaatttg 401  Q
    ||||||||||||||| ||||||||||| ||| |||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  12797934 agtgatagacaaaccaccttatgtggc-taccaccattccatacacccccatgtggcagggacaattttgtccattaacaaaaaataagggataaatttg 12798032  T
Q  402 tcatacaacatcttatcaccctcttcctctctcttctctatcctcggtcatttt 455  Q
    |||||||| |||||||||||||||||||||||||||||||||| ||||||||||    
T  12798033 tcatacaatatcttatcaccctcttcctctctcttctctatccgcggtcatttt 12798086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 302 - 455
Target Start/End: Complemental strand, 22495381 - 22495230
Alignment:
Q  302 agtgatagacaaaccgccttatgtggcatactaccatttcatacacccccatgtggtagggacaattttgtccattaacaaaaaataagggataaatttg 401  Q
    ||||||||||||||| ||||||||||| ||| |||||| |||||||||||| |||| | |||||||||||||||||||||||||||||||||||||||||    
T  22495381 agtgatagacaaaccaccttatgtggc-taccaccattccatacacccccacgtggaaaggacaattttgtccattaacaaaaaataagggataaatttg 22495283  T
Q  402 tcatacaacatcttatcaccctcttcctctctcttctctatcctcggtcatttt 455  Q
    |||||||| ||||||||| |||||||||||||||||||||||||||||||||||    
T  22495282 tcatacaatatcttatca-cctcttcctctctcttctctatcctcggtcatttt 22495230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 3e-21; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 352 - 412
Target Start/End: Complemental strand, 51466176 - 51466116
Alignment:
Q  352 atgtggtagggacaattttgtccattaacaaaaaataagggataaatttgtcatacaacat 412  Q
    ||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||    
T  51466176 atgtggtagggacaattttatccattaataaaaaataagggataaatttgtcatacaacat 51466116  T

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Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 348 - 409
Target Start/End: Original strand, 21191541 - 21191602
Alignment:
Q  348 ccccatgtggtagggacaattttgtccattaacaaaaaataagggataaatttgtcatacaa 409  Q
    |||||||||| |||||||||||||||||| |||||||||||||||||||||||||| |||||    
T  21191541 ccccatgtggcagggacaattttgtccatcaacaaaaaataagggataaatttgtcctacaa 21191602  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 131 - 164
Target Start/End: Original strand, 40946270 - 40946303
Alignment:
Q  131 tatttatttaagacactattatctattttataat 164  Q
    ||||||||||||||||||||||||||||||||||    
T  40946270 tatttatttaagacactattatctattttataat 40946303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 359 - 403
Target Start/End: Original strand, 43523913 - 43523957
Alignment:
Q  359 agggacaattttgtccattaacaaaaaataagggataaatttgtc 403  Q
    |||| ||||||||||||||||||||||| ||||||||| ||||||    
T  43523913 aggggcaattttgtccattaacaaaaaacaagggataattttgtc 43523957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 131 - 164
Target Start/End: Complemental strand, 55970221 - 55970188
Alignment:
Q  131 tatttatttaagacactattatctattttataat 164  Q
    ||||||||||| ||||||||||||||||||||||    
T  55970221 tatttatttaaaacactattatctattttataat 55970188  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 2 - 58
Target Start/End: Complemental strand, 23359244 - 23359188
Alignment:
Q  2 catcattcttttataattttttaataacaaaacctaataagcactcaatcgctccaa 58  Q
    |||||||| |||||||||||||||||  |  | ||||||||||||||||| ||||||    
T  23359244 catcattcatttataattttttaatagtagtatctaataagcactcaatcactccaa 23359188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 348 - 409
Target Start/End: Original strand, 11630076 - 11630137
Alignment:
Q  348 ccccatgtggtagggacaattttgtccattaacaaaaaataagggataaatttgtcatacaa 409  Q
    |||||||||| |||||||||||||||||| |||||||||||||||||||||||||| |||||    
T  11630076 ccccatgtggcagggacaattttgtccatcaacaaaaaataagggataaatttgtcctacaa 11630137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 131 - 164
Target Start/End: Complemental strand, 24848945 - 24848912
Alignment:
Q  131 tatttatttaagacactattatctattttataat 164  Q
    ||||||||||| ||||||||||||||||||||||    
T  24848945 tatttatttaaaacactattatctattttataat 24848912  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 2 - 127
Target Start/End: Complemental strand, 42401142 - 42401016
Alignment:
Q  2 catcattcttttataattttttaataacaaaacctaataagcactcaatcgctccaatgaagcacctgt-agcaaagttctaaatgagttccatcaataa 100  Q
    ||||| |||||||||||||||||||||||  |||||||||||||||| || |||||||| ||  ||| | |  |||| |||||||  || ||| ||  ||    
T  42401142 catcactcttttataattttttaataacagtacctaataagcactcagtcactccaatggagaccctctgacaaaaggtctaaatcggtcccaccacgaa 42401043  T
Q  101 ctcttcatcatttacattctaacaata 127  Q
    ||||||||||||||||||| |||||||    
T  42401042 ctcttcatcatttacattccaacaata 42401016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 3 - 59
Target Start/End: Original strand, 37583034 - 37583090
Alignment:
Q  3 atcattcttttataattttttaataacaaaacctaataagcactcaatcgctccaat 59  Q
    |||| |||||||||||||||||||||||| |||||||||||||| | || |||||||    
T  37583034 atcaatcttttataattttttaataacaatacctaataagcacttagtcactccaat 37583090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 10 - 58
Target Start/End: Complemental strand, 44850069 - 44850021
Alignment:
Q  10 ttttataattttttaataacaaaacctaataagcactcaatcgctccaa 58  Q
    |||||||||||||||||||||| |||||||||||||||  |||||||||    
T  44850069 ttttataattttttaataacaatacctaataagcactcggtcgctccaa 44850021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 365 - 403
Target Start/End: Complemental strand, 44520885 - 44520847
Alignment:
Q  365 aattttgtccattaacaaaaaataagggataaatttgtc 403  Q
    |||||||||||||||||||||||||||||||| ||||||    
T  44520885 aattttgtccattaacaaaaaataagggataattttgtc 44520847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 10 - 118
Target Start/End: Original strand, 42483696 - 42483805
Alignment:
Q  10 ttttataattttttaataacaaaacctaataagcactcaatcgctccaatgaagcacctgtagcaaagt-tctaaatgagttccatcaataactcttcat 108  Q
    |||||||||||||||||||||  | |||||||||||||||||  ||||||| ||  ||| || |||| | ||||| || || ||| ||||||||| | ||    
T  42483696 ttttataattttttaataacagtatctaataagcactcaatcattccaatggagaccctctaacaaaatatctaactgggtcccaccaataactcattat 42483795  T
Q  109 catttacatt 118  Q
    ||||||||||    
T  42483796 catttacatt 42483805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 10 - 50
Target Start/End: Complemental strand, 20558644 - 20558604
Alignment:
Q  10 ttttataattttttaataacaaaacctaataagcactcaat 50  Q
    |||||||||||||||||||||  ||||||||||||||||||    
T  20558644 ttttataattttttaataacagtacctaataagcactcaat 20558604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 11 - 58
Target Start/End: Complemental strand, 46487110 - 46487063
Alignment:
Q  11 tttataattttttaataacaaaacctaataagcactcaatcgctccaa 58  Q
    |||||||||||||||||| || ||||||||| ||||||||| ||||||    
T  46487110 tttataattttttaataataatacctaataaacactcaatccctccaa 46487063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 347 - 393
Target Start/End: Complemental strand, 35363607 - 35363562
Alignment:
Q  347 cccccatgtggtagggacaattttgtccattaacaaaaaataaggga 393  Q
    ||||||||||| |||| ||||||||||||||||||||||| ||||||    
T  35363607 cccccatgtggcaggg-caattttgtccattaacaaaaaacaaggga 35363562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 131 - 164
Target Start/End: Original strand, 15457125 - 15457158
Alignment:
Q  131 tatttatttaagacactattatctattttataat 164  Q
    ||||||||||||||||||||||| ||||||||||    
T  15457125 tatttatttaagacactattatcgattttataat 15457158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 50
Target Start/End: Complemental strand, 32474259 - 32474210
Alignment:
Q  2 catcattc-ttttataattttttaataacaaaacctaataagcactcaat 50  Q
    |||||||| |||||||||||||||||  ||| ||||||||||||||||||    
T  32474259 catcattcattttataattttttaatgtcaatacctaataagcactcaat 32474210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 10 - 50
Target Start/End: Original strand, 17349824 - 17349864
Alignment:
Q  10 ttttataattttttaataacaaaacctaataagcactcaat 50  Q
    |||||||||||||||||| ||| ||||||||| ||||||||    
T  17349824 ttttataattttttaatatcaatacctaataatcactcaat 17349864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 2 - 58
Target Start/End: Complemental strand, 27544514 - 27544458
Alignment:
Q  2 catcattcttttataattttttaataacaaaacctaataagcactcaatcgctccaa 58  Q
    ||||| || |||||||||||||||||| |  | ||||||||||||||||| ||||||    
T  27544514 catcactcatttataattttttaataatagcatctaataagcactcaatccctccaa 27544458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 2 - 125
Target Start/End: Original strand, 9486796 - 9486920
Alignment:
Q  2 catcattcttttataattttttaataacaaaacctaataagcactcaatcgctccaatgaagcacctgtagcaaagt-tctaaatgagttccatcaataa 100  Q
    ||||| ||||||| | |||||||||||||  |||||||||| |||||||| || |||| |||  ||| || |||| | |||||||||| | || ||||||    
T  9486796 catcaatcttttacatttttttaataacagtacctaataagtactcaatcactgcaataaagaccctataacaaaatgtctaaatgagctacaccaataa 9486895  T
Q  101 ctcttcatcatttacattctaacaa 125  Q
    ||||| |||||||||||| ||||||    
T  9486896 ctctttatcatttacattttaacaa 9486920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 74 - 127
Target Start/End: Complemental strand, 4999003 - 4998950
Alignment:
Q  74 aaagttctaaatgagttccatcaataactcttcatcatttacattctaacaata 127  Q
    |||| ||||||||||||||||||| |||||| ||| |||||||||| |||||||    
T  4999003 aaaggtctaaatgagttccatcaacaactctgcattatttacattccaacaata 4998950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 131 - 164
Target Start/End: Complemental strand, 30224728 - 30224695
Alignment:
Q  131 tatttatttaagacactattatctattttataat 164  Q
    ||||||||||||||||||||||||||||||||||    
T  30224728 tatttatttaagacactattatctattttataat 30224695  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 2 - 63
Target Start/End: Original strand, 40485073 - 40485134
Alignment:
Q  2 catcattcttttataattttttaataacaaaacctaataagcactcaatcgctccaatgaag 63  Q
    ||||||||||||||||||||||||||| |  |||||||||||| |||| | |||||||||||    
T  40485073 catcattcttttataattttttaataatagtacctaataagcattcaaccactccaatgaag 40485134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 112
Target Start/End: Complemental strand, 52393784 - 52393672
Alignment:
Q  2 catcattcttttataattttttaataacaaaacctaataagcactcaatcgctccaatgaagcacctgtagc--aaagttctaaatgagttccatcaata 99  Q
    |||||||  ||||||||||||||||||||| | ||||||| || |||||| ||| |||  ||||| | || |  |||||| ||||||||| ||| |||||    
T  52393784 catcatttatttataattttttaataacaatatctaataaacattcaatcactctaatccagcacatctaacaaaaagttataaatgagtcccaacaata 52393685  T
Q  100 actcttcatcatt 112  Q
    |  ||||||||||    
T  52393684 atccttcatcatt 52393672  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 6 - 60
Target Start/End: Original strand, 4747055 - 4747109
Alignment:
Q  6 attcttttataattttttaataacaaaacctaataagcactcaatcgctccaatg 60  Q
    |||| ||||||||||||||||||||  | ||||||||||||||||| ||||||||    
T  4747055 attcatttataattttttaataacattatctaataagcactcaatcactccaatg 4747109  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 3 - 118
Target Start/End: Complemental strand, 38037505 - 38037389
Alignment:
Q  3 atcattcttttataattttttaataacaaaacctaataagcactcaatcgctccaatgaagcacctgtagc--aaagttctaaatgagttccatcaataa 100  Q
    |||||| ||||||||||||||||||| || | |||||| | |||||||| |||||||  || | || || |  |||||| |||||| |||||| ||||||    
T  38037505 atcatttttttataattttttaataataatatctaataggtactcaatcactccaatagagaatctctaacaaaaagtt-taaatgggttccaccaataa 38037407  T
Q  101 ctcttcatcatttacatt 118  Q
    ||||| ||||||||||||    
T  38037406 ctctttatcatttacatt 38037389  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 343 - 403
Target Start/End: Complemental strand, 11888952 - 11888891
Alignment:
Q  343 tacacccccatgtggta-gggacaattttgtccattaacaaaaaataagggataaatttgtc 403  Q
    ||||||||||||||  | ||| |||||||||||||||||||||||||| |||||| ||||||    
T  11888952 tacacccccatgtgacaaggggcaattttgtccattaacaaaaaataatggataattttgtc 11888891  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 161 - 206
Target Start/End: Original strand, 4747189 - 4747234
Alignment:
Q  161 taatgaaaagtattgttggatccacttaagaatgagatgcttaagt 206  Q
    ||||||||||||||   || ||||||||||||||||||||||||||    
T  4747189 taatgaaaagtattacggggtccacttaagaatgagatgcttaagt 4747234  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 11 - 59
Target Start/End: Original strand, 1309753 - 1309801
Alignment:
Q  11 tttataattttttaataacaaaacctaataagcactcaatcgctccaat 59  Q
    |||||||||||||||||| |  | ||||||||||||||||| |||||||    
T  1309753 tttataattttttaataatagtatctaataagcactcaatcactccaat 1309801  T

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Target: scaffold0272 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0272
Description:

Target: scaffold0272; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 161 - 227
Target Start/End: Original strand, 5205 - 5271
Alignment:
Q  161 taatgaaaagtattgttggatccacttaagaatgagatgcttaagtgaaaccctgagttttttaaaa 227  Q
    |||||||||||||||| ||||||| || | |||||||||||||| ||| || |||||| || |||||    
T  5205 taatgaaaagtattgtgggatccatttcaaaatgagatgcttaaatgagacgctgagtcttataaaa 5271  T

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Target: scaffold0102 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0102
Description:

Target: scaffold0102; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 161 - 214
Target Start/End: Original strand, 24182 - 24235
Alignment:
Q  161 taatgaaaagtattgttggatccacttaagaatgagatgcttaagtgaaaccct 214  Q
    |||||||||||||||| || || |||||| |||||||| |||||||||| ||||    
T  24182 taatgaaaagtattgtggggtcaacttaataatgagatacttaagtgaagccct 24235  T

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