View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18162_low_7 (Length: 494)
Name: NF18162_low_7
Description: NF18162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18162_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 236 - 478
Target Start/End: Original strand, 35219455 - 35219697
Alignment:
| Q |
236 |
tatcaaggtagtgtacatatcaaaccctatgaaggttaagactagtgcctctgaatttagggcactggtccaagaactcaccggtcagtacgctgaatcg |
335 |
Q |
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| T |
35219455 |
tatcaaggtagtgtacatatcaaaccctatgaaggttaagactagtgcctctgaatttagggcactggtccaagaactcaccggtcagtacgctgaatcg |
35219554 |
T |
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| Q |
336 |
ccgccaaacccttccaggtttcaagagtttgacgtcgatgatagcggtactgacccgggtggttgtgagaataggatggattgtgataaaagtgatcaaa |
435 |
Q |
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| T |
35219555 |
ccgccaaacccttctaggtttcaagagtttgacgtcaatgatagcggtactgaccagggtggttgtgagaatatgatggattgtgataaaagtgatcaaa |
35219654 |
T |
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| Q |
436 |
cagttgtgggggtgccttctcttgtggatcccgatgataaagg |
478 |
Q |
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| T |
35219655 |
cagttgtgggggtgccttctcttgtggatcccgatgataaagg |
35219697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 13 - 163
Target Start/End: Original strand, 35219232 - 35219382
Alignment:
| Q |
13 |
aaaatcaaacccccttcattacatttacacgttcagttgttatctttaaaccaaacccgaaaacaacagtaccaagtttttgtcattctttgctagaaac |
112 |
Q |
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| T |
35219232 |
aaaatcaaacacccttcattacatttacacgttcagttgttatctttaaaccaaacccgaaaacaacagtaccaagtttttgtcattctttgctagaaac |
35219331 |
T |
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| Q |
113 |
tatggactctatcagcacaagtagcaccagttcatcagtgattagtactgt |
163 |
Q |
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| T |
35219332 |
tatggactctatcagcacaagtagcaccagttcatcagtgattagtactgt |
35219382 |
T |
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