View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18162_low_9 (Length: 473)

Name: NF18162_low_9
Description: NF18162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18162_low_9
NF18162_low_9
[»] chr3 (2 HSPs)
chr3 (13-456)||(25601605-25602048)
chr3 (13-417)||(25596839-25597252)
[»] chr4 (18 HSPs)
chr4 (67-378)||(36643440-36643751)
chr4 (67-391)||(36636745-36637069)
chr4 (245-391)||(55967007-55967153)
chr4 (248-360)||(36613342-36613454)
chr4 (248-392)||(38863134-38863278)
chr4 (266-360)||(35974003-35974097)
chr4 (231-315)||(18364242-18364326)
chr4 (268-380)||(35968285-35968397)
chr4 (231-315)||(36598599-36598683)
chr4 (245-392)||(18083021-18083168)
chr4 (77-180)||(36613165-36613268)
chr4 (245-392)||(36617513-36617660)
chr4 (248-318)||(3978136-3978206)
chr4 (266-392)||(18359158-18359284)
chr4 (266-392)||(36603644-36603770)
chr4 (122-207)||(36668463-36668548)
chr4 (99-207)||(35968458-35968566)
chr4 (67-134)||(36909764-36909831)
[»] chr5 (4 HSPs)
chr5 (77-359)||(19674990-19675272)
chr5 (77-359)||(19658151-19658433)
chr5 (286-372)||(17667110-17667196)
chr5 (273-330)||(25064275-25064332)
[»] chr1 (2 HSPs)
chr1 (115-389)||(42602730-42603004)
chr1 (258-392)||(28928442-28928576)
[»] chr6 (6 HSPs)
chr6 (266-391)||(33844280-33844405)
chr6 (266-391)||(33840288-33840413)
chr6 (286-392)||(7140746-7140852)
chr6 (286-392)||(8680360-8680466)
chr6 (169-207)||(33840185-33840223)
chr6 (145-207)||(33844153-33844215)
[»] chr7 (4 HSPs)
chr7 (266-330)||(32413648-32413712)
chr7 (253-318)||(6844163-6844228)
chr7 (287-372)||(14677153-14677238)
chr7 (266-318)||(44501441-44501493)
[»] chr8 (2 HSPs)
chr8 (250-359)||(35335844-35335953)
chr8 (258-330)||(27701888-27701960)
[»] chr2 (2 HSPs)
chr2 (275-321)||(43864058-43864104)
chr2 (258-319)||(43875208-43875269)


Alignment Details
Target: chr3 (Bit Score: 412; Significance: 0; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 13 - 456
Target Start/End: Complemental strand, 25602048 - 25601605
Alignment:
Q  13 gtgagatgaagaaacacattggagaatgagatcattatcacccctaacatagactcctaattcgtggagttgggaattatgagaggaaacatactttaaa 112  Q
    |||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25602048 gtgacatgaagaaacacattggagaatgagatcactatcacccctaacatagactcctaattcgtggagttgggaattatgagaggaaacatactttaaa 25601949  T
Q  113 atctttttgaggagtcgaggctggatattaccatcacagtcaagatcaagagcattcaatgaagctgagctatcacgaagagtcaaaatcttagagatga 212  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  25601948 atctttttgaggagtcgaggctggatgttaccatcacagtcaagatcaagagcattcaatgaagctgagctatcacgaagagtcaaaatcttagagacga 25601849  T
Q  213 atgccgcaaaactctttatagtgggaaattcagaggaatgcaatataagggtgggaatacgtttccaaagatacttccatcttgtggacaaaatgcaagt 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25601848 atgccgcaaaactctttatagtgggaaattcagaggaatgcaatataagggtgggaatacgtttccaaagatacttccatcttgtggacaaaatgcaagt 25601749  T
Q  313 ttgaacggcatgtttggtattacaaaatgacaaaatatgaaggagaacacagtcgggtaaatcactcaatctgtcttcatgctcgttctcagagtgtatt 412  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25601748 ttgaacagcatgtttggtattacaaaatgacaaaatatgaaggagaacacagtcgggtaaatcactcaatctgtcttcatgctcgttctcagagtgtatt 25601649  T
Q  413 gctttattcaaaaaatttataaaatcagacatgtcccttgtttc 456  Q
    ||||||||||||   |||||||||||||||||||||||||||||    
T  25601648 gctttattcaaattttttataaaatcagacatgtcccttgtttc 25601605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 13 - 417
Target Start/End: Complemental strand, 25597252 - 25596839
Alignment:
Q  13 gtgagatgaagaaacacattggagaatgagatcattatcacccctaacatagactcctaattcgtggagttgggaattatgagaggaaacatactttaaa 112  Q
    |||| ||||||||||||| || ||||||||| || |||||||||||||| ||| |||||||||  | || |||||||||||||| |||||||| | |||     
T  25597252 gtgacatgaagaaacacaatgaagaatgagaccactatcacccctaacagagattcctaattcccgaaggtgggaattatgagaagaaacatagtctaat 25597153  T
Q  113 atctttttgaggagtcgaggctggatattaccatcacag---------tcaagatcaagagcattcaatgaagctgagctatcacgaagagtcaaaatct 203  Q
    |||||||||||||||  || | |||||||||||||| ||         |||||||||||||||| || ||||| || ||||||||||||||| |||||||    
T  25597152 atctttttgaggagttcagacgggatattaccatcatagggtgtacggtcaagatcaagagcatgcagtgaagttgtgctatcacgaagagttaaaatct 25597053  T
Q  204 tagagatgaatgccgcaaaactctttatagtgggaaattcagaggaatgcaatataagggtgggaatacgtttccaaagatacttccatcttgtggacaa 303  Q
    |||| | | |||  | |||| |||  |||||||| ||||||  | ||||||||||||||||||||||| |||||||||||| ||||||||| || |||||    
T  25597052 tagatacggatgaggtaaaattctccatagtggggaattcaaggcaatgcaatataagggtgggaatatgtttccaaagattcttccatctcgtagacaa 25596953  T
Q  304 aatgcaagtttgaacggcatgtttggtattacaaaatgacaaaatatgaaggagaacacagtcgggtaaatcactcaatctgtcttcatgctcgttctca 403  Q
    ||||||||||||||||||||  ||||||||  ||||||||||||| ||||| ||||||  |||||||||||| |||||||||||||||| ||| || |||    
T  25596952 aatgcaagtttgaacggcatacttggtattcaaaaatgacaaaatgtgaagaagaacattgtcgggtaaatcgctcaatctgtcttcattctcattttca 25596853  T
Q  404 gagtgtattgcttt 417  Q
     |||||||||||||    
T  25596852 cagtgtattgcttt 25596839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 76; Significance: 6e-35; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 67 - 378
Target Start/End: Original strand, 36643440 - 36643751
Alignment:
Q  67 tcctaattcgtggagttgggaattatgagaggaaacatactttaaaatctttttgaggagtcgaggctggatattaccatcacagtcaagatcaagagca 166  Q
    ||||||||||||||| |||| |||||| ||| ||| ||| |||||||||||||| |||||| |||| |  |||| ||||  ||  |||||||  |||||     
T  36643440 tcctaattcgtggaggtgggtattatgggagcaaatataatttaaaatctttttaaggagttgaggttcaatatcaccacgacgatcaagattgagagct 36643539  T
Q  167 ttcaatgaagctgagctatcacgaagagtcaaaatcttagagatgaatgccgcaaaactctttatagtgggaaattcagaggaatgcaatataagggtgg 266  Q
    | ||  |||| ||||||||  |||||||||||||| ||||| | ||||   |||||  |||| | ||| | ||| |  |||||||| ||||||||||| |    
T  36643540 tgcagagaagttgagctattgcgaagagtcaaaatgttagacacgaatatggcaaatttcttgacagttgaaaagtttgaggaatgtaatataagggtag 36643639  T
Q  267 gaatacgtttccaaagatacttccatcttgtggacaaaatgcaagtttgaacggcatgtttggtattacaaaatgacaaaatatgaaggagaacacagtc 366  Q
    ||||||||  |||||||| ||||||||||||||||||||  || |||||||| ||||||||||  |   ||||||| ||||| ||||||| |||||| ||    
T  36643640 gaatacgtgcccaaagatgcttccatcttgtggacaaaacacaggtttgaacagcatgtttggagtccaaaaatgataaaatgtgaaggataacacactc 36643739  T
Q  367 gggtaaatcact 378  Q
    |||||| |||||    
T  36643740 gggtaagtcact 36643751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 67 - 391
Target Start/End: Original strand, 36636745 - 36637069
Alignment:
Q  67 tcctaattcgtggagttgggaattatgagaggaaacatactttaaaatctttttgaggagtcgaggctggatattaccatcacagtcaagatcaagagca 166  Q
    |||||| || ||||| |||| |||||| ||||||||||| |||||||||||||| |||||| ||||||  || ||||||| || |||||||||||||||     
T  36636745 tcctaaatcctggaggtgggtattatgggaggaaacatagtttaaaatctttttaaggagttgaggctcaatgttaccatgacggtcaagatcaagagcg 36636844  T
Q  167 ttcaatgaagctgagctatcacgaagagtcaaaatcttagagatgaatgccgcaaaactctttatagtgggaaattcagaggaatgcaatataagggtgg 266  Q
    | || || || |||| |||||||||||||||| || ||||| |  ||    |||||   ||| | ||||| ||||   || | || ||| ||||| || |    
T  36636845 tgcagtgcagttgaggtatcacgaagagtcaatatgttagacacaaacatggcaaattgcttaacagtggaaaatcttgatgcatacaacataagagttg 36636944  T
Q  267 gaatacgtttccaaagatacttccatcttgtggacaaaatgcaagtttgaacggcatgtttggtattacaaaatgacaaaatatgaaggagaacacagtc 366  Q
    ||||||||||||| ||||   |||||||  | |||||||  ||||||   ||  |||||||||||||  ||||||||||||| |||||||  | || |||    
T  36636945 gaatacgtttccagagatgtctccatctcttagacaaaacacaagttctgacaacatgtttggtattcaaaaatgacaaaatgtgaaggattataccgtc 36637044  T
Q  367 gggtaaatcactcaatctgtcttca 391  Q
    |||||| |||||||  |||||||||    
T  36637045 gggtaagtcactcagcctgtcttca 36637069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 245 - 391
Target Start/End: Original strand, 55967007 - 55967153
Alignment:
Q  245 gaggaatgcaatataagggtgggaatacgtttccaaagatacttccatcttgtggacaaaatgcaagtttgaacggcatgtttggtattacaaaatgaca 344  Q
    ||||||||||| |||||||  |||| | ||||||| |||||  ||||||||||||||||||  ||||||  || | |||| ||||| ||  ||||||| |    
T  55967007 gaggaatgcaaaataagggctggaacatgtttccagagatatctccatcttgtggacaaaacacaagttctaatgacatgcttggtcttcaaaaatgata 55967106  T
Q  345 aaatatgaaggagaacacagtcgggtaaatcactcaatctgtcttca 391  Q
    |||| ||||||||||||| ||||||||| |||||  |||||||||||    
T  55967107 aaatgtgaaggagaacactgtcgggtaagtcactttatctgtcttca 55967153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 248 - 360
Target Start/End: Original strand, 36613342 - 36613454
Alignment:
Q  248 gaatgcaatataagggtgggaatacgtttccaaagatacttccatcttgtggacaaaatgcaagtttgaacggcatgtttggtattacaaaatgacaaaa 347  Q
    ||||||||  |||| || |||||| ||||||||||||||||||| |||||||||||||  ||||||||| |||||| | |||  |   ||||||||||||    
T  36613342 gaatgcaaattaagagttggaataagtttccaaagatacttccaccttgtggacaaaacacaagtttgatcggcatatgtggcgtccaaaaatgacaaaa 36613441  T
Q  348 tatgaaggagaac 360  Q
    | |||||||||||    
T  36613442 tgtgaaggagaac 36613454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 248 - 392
Target Start/End: Original strand, 38863134 - 38863278
Alignment:
Q  248 gaatgcaatataagggtgggaatacgtttccaaagatacttccatcttgtggacaaaatgcaagtttgaacggcatgtttggtattacaaaatgacaaaa 347  Q
    |||||||||||||| |  |||||||||||| | ||||  ||||||||  |||||||||  |||||| ||| |||||||||||||||  |  |||||||||    
T  38863134 gaatgcaatataagagatggaatacgtttcgagagatgtttccatctcttggacaaaacacaagttcgaatggcatgtttggtattcaacgatgacaaaa 38863233  T
Q  348 tatgaaggagaacacagtcgggtaaatcactcaatctgtcttcat 392  Q
    | | |||||||| || ||||||||| ||||||   ||||||||||    
T  38863234 tgtaaaggagaataccgtcgggtaagtcactcggcctgtcttcat 38863278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 266 - 360
Target Start/End: Complemental strand, 35974097 - 35974003
Alignment:
Q  266 ggaatacgtttccaaagatacttccatcttgtggacaaaatgcaagtttgaacggcatgtttggtattacaaaatgacaaaatatgaaggagaac 360  Q
    |||||||||||||| ||||   ||||||||||||||||||| ||| |||||||||| ||||| ||||   | ||||||||||| |||||||||||    
T  35974097 ggaatacgtttccagagatgtctccatcttgtggacaaaatacaactttgaacggcctgttttgtatcgaacaatgacaaaatgtgaaggagaac 35974003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 231 - 315
Target Start/End: Complemental strand, 18364326 - 18364242
Alignment:
Q  231 tagtgggaaattcagaggaatgcaatataagggtgggaatacgtttccaaagatacttccatcttgtggacaaaatgcaagtttg 315  Q
    |||||| ||| || ||||||||||| ||||| || ||||| |||||||||||||  ||||||||||| ||||||||| |||||||    
T  18364326 tagtggaaaagtctgaggaatgcaacataagagttggaatgcgtttccaaagatgtttccatcttgtagacaaaatggaagtttg 18364242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 268 - 380
Target Start/End: Complemental strand, 35968397 - 35968285
Alignment:
Q  268 aatacgtttccaaagatacttccatcttgtggacaaaatgcaagtttgaacggcatgtttggtattacaaaatgacaaaatatgaaggagaacacagtcg 367  Q
    |||||||||||| ||||  | ||||||| ||||||||| ||||||||||||| | ||||| ||||   | ||||||||||| ||||||||||| | ||||    
T  35968397 aatacgtttccagagatgttcccatcttttggacaaaacgcaagtttgaacgacctgttttgtatccaataatgacaaaatgtgaaggagaactccgtcg 35968298  T
Q  368 ggtaaatcactca 380  Q
    | ||| |||||||    
T  35968297 gctaactcactca 35968285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 231 - 315
Target Start/End: Original strand, 36598599 - 36598683
Alignment:
Q  231 tagtgggaaattcagaggaatgcaatataagggtgggaatacgtttccaaagatacttccatcttgtggacaaaatgcaagtttg 315  Q
    |||||| ||| || ||||||||||| ||||| || ||||| |||||||||||||  ||||||||||| ||||||||| |||||||    
T  36598599 tagtggaaaagtctgaggaatgcaacataagagttggaatgcgtttccaaagatgtttccatcttgtagacaaaatggaagtttg 36598683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 245 - 392
Target Start/End: Complemental strand, 18083168 - 18083021
Alignment:
Q  245 gaggaatgcaatataagggtgggaatacgtttccaaagatacttccatcttgtggacaaaatgcaagtttgaacggcatgtttggtattacaaaatgaca 344  Q
    ||||||| ||||| ||| || |||||| ||||||| | ||  ||||||||| | ||||||| ||||||| ||||  ||| |||||| ||  |||||||||    
T  18083168 gaggaatccaatacaagagtaggaatatgtttccatatatctttccatcttctagacaaaacgcaagttcgaacaccatctttggtgtttaaaaatgaca 18083069  T
Q  345 aaatatgaaggagaacacagtcgggtaaatcactcaatctgtcttcat 392  Q
    |||||  ||||| ||||| ||  ||||| |||||||| || |||||||    
T  18083068 aaatacaaaggataacactgttaggtaagtcactcaacctatcttcat 18083021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 77 - 180
Target Start/End: Original strand, 36613165 - 36613268
Alignment:
Q  77 tggagttgggaattatgagaggaaacatactttaaaatctttttgaggagtcgaggctggatattaccatcacagtcaagatcaagagcattcaatgaag 176  Q
    ||||| |||| |||||  ||||||||||| || ||||||||||| |||| ||||||||  ||||||||   |||||||| |||||| |||| ||||| ||    
T  36613165 tggaggtgggtattatctgaggaaacataattcaaaatctttttaaggattcgaggctcaatattacctctacagtcaaaatcaagggcatccaatgcag 36613264  T
Q  177 ctga 180  Q
    ||||    
T  36613265 ctga 36613268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 245 - 392
Target Start/End: Original strand, 36617513 - 36617660
Alignment:
Q  245 gaggaatgcaatataagggtgggaatacgtttccaaagatacttccatcttgtggacaaaatgcaagtttgaacggcatgtttggtattacaaaatgaca 344  Q
    ||||||| ||||| ||| || |||||| ||||||| | ||  ||||||||| | ||||||| ||||||| ||||  ||| |||||| ||  |||||||||    
T  36617513 gaggaatccaatacaagagtaggaatatgtttccatatatctttccatcttctagacaaaacgcaagttcgaacaccatctttggtgtttaaaaatgaca 36617612  T
Q  345 aaatatgaaggagaacacagtcgggtaaatcactcaatctgtcttcat 392  Q
    |||||  ||||| ||||| ||  ||||| |||||||| || |||||||    
T  36617613 aaatacaaaggataacactgttaggtaagtcactcaacctatcttcat 36617660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 248 - 318
Target Start/End: Complemental strand, 3978206 - 3978136
Alignment:
Q  248 gaatgcaatataagggtgggaatacgtttccaaagatacttccatcttgtggacaaaatgcaagtttgaac 318  Q
    ||||||||| |||| || |||| |||||||||||||| |||  |||||||||| |||| ||||||||||||    
T  3978206 gaatgcaatgtaagagtaggaagacgtttccaaagatccttatatcttgtggataaaacgcaagtttgaac 3978136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 266 - 392
Target Start/End: Complemental strand, 18359284 - 18359158
Alignment:
Q  266 ggaatacgtttccaaagatacttccatcttgtggacaaaatgcaagtttgaacggcatgtttggtattacaaaatgacaaaatatgaaggagaacacagt 365  Q
    |||||| |||||||||||| |||||| ||| |||||||||||| |||| ||||   |||||||| ||   | | ||||||||| ||||| |||||||| |    
T  18359284 ggaatatgtttccaaagatgcttccaccttttggacaaaatgccagttcgaactcgatgtttggaatccaacattgacaaaatgtgaagaagaacacaat 18359185  T
Q  366 cgggtaaatcactcaatctgtcttcat 392  Q
    | || || |||||||  ||||||||||    
T  18359184 caggcaagtcactcagcctgtcttcat 18359158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 266 - 392
Target Start/End: Original strand, 36603644 - 36603770
Alignment:
Q  266 ggaatacgtttccaaagatacttccatcttgtggacaaaatgcaagtttgaacggcatgtttggtattacaaaatgacaaaatatgaaggagaacacagt 365  Q
    |||||| |||||||||||| |||||| ||| |||||||||||| |||| ||||   |||||||| ||   | | ||||||||| ||||| |||||||| |    
T  36603644 ggaatatgtttccaaagatgcttccaccttttggacaaaatgccagttcgaactcgatgtttggaatccaacattgacaaaatgtgaagaagaacacaat 36603743  T
Q  366 cgggtaaatcactcaatctgtcttcat 392  Q
    | || || |||||||  ||||||||||    
T  36603744 caggcaagtcactcagcctgtcttcat 36603770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 122 - 207
Target Start/End: Original strand, 36668463 - 36668548
Alignment:
Q  122 aggagtcgaggctggatattaccatcacagtcaagatcaagagcattcaatgaagctgagctatcacgaagagtcaaaatcttaga 207  Q
    ||||||||||| |  | |||||||| || ||||| ||||||| |   ||||| || ||||||||||||||||||||||||||||||    
T  36668463 aggagtcgaggttcaaaattaccattacggtcaacatcaagaacgcgcaatgcagttgagctatcacgaagagtcaaaatcttaga 36668548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 99 - 207
Target Start/End: Complemental strand, 35968566 - 35968458
Alignment:
Q  99 aaacatactttaaaatctttttgaggagtcgaggctggatattaccatcacagtcaagatcaagagcattcaatgaagctgagctatcacgaagagtcaa 198  Q
    ||||||| | ||||| |||||  |||||| ||| ||  |||||||||| || ||||| ||||||||| | || || |  |||| ||||||||||||||||    
T  35968566 aaacatagtctaaaaccttttcaaggagttgagactcaatattaccatgacggtcaatatcaagagcttgcagtggaattgaggtatcacgaagagtcaa 35968467  T
Q  199 aatcttaga 207  Q
    |||||||||    
T  35968466 aatcttaga 35968458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 67 - 134
Target Start/End: Complemental strand, 36909831 - 36909764
Alignment:
Q  67 tcctaattcgtggagttgggaattatgagaggaaacatactttaaaatctttttgaggagtcgaggct 134  Q
    ||||||||| ||||| |||| |||||| || | |||||| |||||||||||||| |||||| ||||||    
T  36909831 tcctaattcatggaggtgggtattatgggaagtaacatagtttaaaatctttttaaggagttgaggct 36909764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 75; Significance: 2e-34; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 77 - 359
Target Start/End: Original strand, 19674990 - 19675272
Alignment:
Q  77 tggagttgggaattatgagaggaaacatactttaaaatctttttgaggagtcgaggctggatattaccatcacagtcaagatcaagagcattcaatgaag 176  Q
    ||||| |||| |||||| ||| ||||||| | |||||||||||| |||| ||||||||  |||| ||||| || |||||||||||| || | |||||||     
T  19674990 tggaggtgggtattatgtgagcaaacataatctaaaatctttttaaggattcgaggctcaatatgaccatgacggtcaagatcaagggcgtgcaatgaaa 19675089  T
Q  177 ctgagctatcacgaagagtcaaaatcttagagatgaatgccgcaaaactctttatagtgggaaattcagaggaatgcaatataagggtgggaatacgttt 276  Q
     |||| ||||||||||||||||||||||||  | ||||  || |||   ||| | ||||| |||||  || |||||||| ||||| || |||||| ||||    
T  19675090 ttgaggtatcacgaagagtcaaaatcttaggcacgaatttcgaaaattgcttcagagtggaaaatttggaagaatgcaaaataagagttggaataagttt 19675189  T
Q  277 ccaaagatacttccatcttgtggacaaaatgcaagtttgaacggcatgtttggtattacaaaatgacaaaatatgaaggagaa 359  Q
    ||| |||| | ||||||| ||||||||||  |||||||||||||||| ||| |  |   ||||||||||||| ||||||||||    
T  19675190 ccagagattcctccatctcgtggacaaaacacaagtttgaacggcatattttgcgtccaaaaatgacaaaatgtgaaggagaa 19675272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 77 - 359
Target Start/End: Original strand, 19658151 - 19658433
Alignment:
Q  77 tggagttgggaattatgagaggaaacatactttaaaatctttttgaggagtcgaggctggatattaccatcacagtcaagatcaagagcattcaatgaag 176  Q
    ||||| |||| |||||| ||| ||||||| | |||||||||||| |||| ||||||||  |||| ||||| || |||||||||||| || | |||||||     
T  19658151 tggaggtgggtattatgtgagcaaacataatctaaaatctttttaaggattcgaggctcaatatgaccatgacggtcaagatcaagggcgtgcaatgaaa 19658250  T
Q  177 ctgagctatcacgaagagtcaaaatcttagagatgaatgccgcaaaactctttatagtgggaaattcagaggaatgcaatataagggtgggaatacgttt 276  Q
     |||| ||||||||||||||||||||||||  | ||||   | |||   ||| | ||||| |||||  || |||||||| ||||| || |||||| ||||    
T  19658251 ttgaggtatcacgaagagtcaaaatcttaggcacgaatttggaaaattgcttcagagtggaaaatttggaagaatgcaaaataagagttggaataagttt 19658350  T
Q  277 ccaaagatacttccatcttgtggacaaaatgcaagtttgaacggcatgtttggtattacaaaatgacaaaatatgaaggagaa 359  Q
    ||| |||| | ||||||| ||||||||||  |||||||||||||||| ||| |  |   ||||||||||||| ||||||||||    
T  19658351 ccagagattcctccatctcgtggacaaaacacaagtttgaacggcatattttgcgtccaaaaatgacaaaatgtgaaggagaa 19658433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 286 - 372
Target Start/End: Original strand, 17667110 - 17667196
Alignment:
Q  286 cttccatcttgtggacaaaatgcaagtttgaacggcatgtttggtattacaaaatgacaaaatatgaaggagaacacagtcgggtaa 372  Q
    |||||||||||| ||||||| ||||||| ||||  | | |||||| ||  ||||||||||||||||||||| ||||| |||||||||    
T  17667110 cttccatcttgtagacaaaacgcaagttcgaacaacttctttggtgtttaaaaatgacaaaatatgaaggataacactgtcgggtaa 17667196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 273 - 330
Target Start/End: Complemental strand, 25064332 - 25064275
Alignment:
Q  273 gtttccaaagatacttccatcttgtggacaaaatgcaagtttgaacggcatgtttggt 330  Q
    ||||||||||||  |||||||||| |||||| ||||| ||||| || |||||||||||    
T  25064332 gtttccaaagattgttccatcttggggacaatatgcatgtttggactgcatgtttggt 25064275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 115 - 389
Target Start/End: Original strand, 42602730 - 42603004
Alignment:
Q  115 ctttttgaggagtcgaggctggatattaccatcacagtcaagatcaagagcattcaatgaagctgagctatcacgaagagtcaaaatcttagagatgaat 214  Q
    |||||| |||||| | ||||  ||| |||||| || || |||||||||||||| || || || |||| ||||||||||||||||||||||||| |  |||    
T  42602730 ctttttaaggagttgcggctcaatactaccatgacggtgaagatcaagagcatgcagtgcagttgaggtatcacgaagagtcaaaatcttagacacaaat 42602829  T
Q  215 gccgcaaaactctttatagtgggaaattcagaggaatgcaatataagggtgggaatacgtttccaaagatacttccatcttgtggacaaaatgcaagttt 314  Q
       | ||||  ||| | ||||||||| |  ||||||| ||||||||| || |||||||||||||| | |  |||||||||| ||||||| ||||||||||    
T  42602830 atggaaaaatgcttcacagtgggaaagtttgaggaatccaatataagagtaggaatacgtttccacataagcttccatcttttggacaagatgcaagttt 42602929  T
Q  315 gaacggcatgtttggtattacaaaatgacaaaatatgaaggagaacacagtcgggtaaatcactcaatctgtctt 389  Q
    ||||||  |||||||  |||  |||||||||||| ||||||| || |||||| ||||| |||||||  |||||||    
T  42602930 gaacggtgtgtttggagttaagaaatgacaaaatgtgaaggataagacagtcaggtaagtcactcagcctgtctt 42603004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 258 - 392
Target Start/End: Original strand, 28928442 - 28928576
Alignment:
Q  258 taagggtgggaatacgtttccaaagatacttccatcttgtggacaaaatgcaagtttgaacggcatgtttggtattacaaaatgacaaaatatgaaggag 357  Q
    |||||||||||| ||| ||||| |||| ||||||||  ||||| |  |||||||||||||| || | |||||  ||  |||| || || || ||||| ||    
T  28928442 taagggtgggaagacgcttccagagattcttccatcgagtggagagtatgcaagtttgaacagcttctttggcttttaaaaaagataatatgtgaagtag 28928541  T
Q  358 aacacagtcgggtaaatcactcaatctgtcttcat 392  Q
    ||||||||| || |||||||| ||  |||||||||    
T  28928542 aacacagtccgggaaatcactgaacatgtcttcat 28928576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 5e-17; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 266 - 391
Target Start/End: Original strand, 33844280 - 33844405
Alignment:
Q  266 ggaatacgtttccaaagatacttccatcttgtggacaaaatgcaagtttgaacggcatgtttggtattacaaaatgacaaaatatgaaggagaacacagt 365  Q
    |||||||||||||| ||||  |||||||| |||||||||||||||||||||||||| | || ||| ||  ||||||||||||| | ||  ||||  ||||    
T  33844280 ggaatacgtttccagagatgtttccatctggtggacaaaatgcaagtttgaacggcgttttcggttttcaaaaatgacaaaatgtaaataagaatgcagt 33844379  T
Q  366 cgggtaaatcactcaatctgtcttca 391  Q
    ||||||| ||||| | ||| ||||||    
T  33844380 cgggtaagtcacttagtctatcttca 33844405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 266 - 391
Target Start/End: Original strand, 33840288 - 33840413
Alignment:
Q  266 ggaatacgtttccaaagatacttccatcttgtggacaaaatgcaagtttgaacggcatgtttggtattacaaaatgacaaaatatgaaggagaacacagt 365  Q
    |||||||||||||||||||  |||||||| |||||||||||||||||| |||| || | || | |  |  ||||||||||||| | ||  ||||  ||||    
T  33840288 ggaatacgtttccaaagatgtttccatctggtggacaaaatgcaagttcgaacagcgtattcgattctcaaaaatgacaaaatgtaaacaagaaggcagt 33840387  T
Q  366 cgggtaaatcactcaatctgtcttca 391  Q
    ||||||| ||||| | ||||||||||    
T  33840388 cgggtaagtcacttagtctgtcttca 33840413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 286 - 392
Target Start/End: Original strand, 7140746 - 7140852
Alignment:
Q  286 cttccatcttgtggacaaaatgcaagtttgaacggcatgtttggtattacaaaatgacaaaatatgaaggagaacacagtcgggtaaatcactcaatctg 385  Q
    |||||||||| |||||||||| ||||||||||| || | ||| |||||  |||| || |  || ||||| | ||||||||||||||||||||| ||  ||    
T  7140746 cttccatcttttggacaaaatacaagtttgaactgcgtatttagtattcaaaaaagagagtatgtgaagtaaaacacagtcgggtaaatcacttaacttg 7140845  T
Q  386 tcttcat 392  Q
    |||||||    
T  7140846 tcttcat 7140852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 286 - 392
Target Start/End: Original strand, 8680360 - 8680466
Alignment:
Q  286 cttccatcttgtggacaaaatgcaagtttgaacggcatgtttggtattacaaaatgacaaaatatgaaggagaacacagtcgggtaaatcactcaatctg 385  Q
    |||||||||| |||||||||| ||||||||||| || | ||| |||||  |||| || |  || ||||| | ||||||||||| ||||||||| ||  ||    
T  8680360 cttccatcttttggacaaaatacaagtttgaactgcgtatttagtattcaaaaaagagagtatgtgaagtaaaacacagtcggctaaatcacttaacttg 8680459  T
Q  386 tcttcat 392  Q
    |||||||    
T  8680460 tcttcat 8680466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 169 - 207
Target Start/End: Original strand, 33840185 - 33840223
Alignment:
Q  169 caatgaagctgagctatcacgaagagtcaaaatcttaga 207  Q
    ||||| ||||||| |||||||||||||||||||||||||    
T  33840185 caatgcagctgagttatcacgaagagtcaaaatcttaga 33840223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 145 - 207
Target Start/End: Original strand, 33844153 - 33844215
Alignment:
Q  145 atcacagtcaagatcaagagcattcaatgaagctgagctatcacgaagagtcaaaatcttaga 207  Q
    |||||| |||| |||||||  || || || ||||||| |||||||||||||||||||||||||    
T  33844153 atcacactcaaaatcaagaatatgcagtgcagctgagttatcacgaagagtcaaaatcttaga 33844215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 266 - 330
Target Start/End: Complemental strand, 32413712 - 32413648
Alignment:
Q  266 ggaatacgtttccaaagatacttccatcttgtggacaaaatgcaagtttgaacggcatgtttggt 330  Q
    |||| ||| ||||| |||| |||||||||||||||||||||||||||||||||||| ||||||||    
T  32413712 ggaagacgcttccagagattcttccatcttgtggacaaaatgcaagtttgaacggcgtgtttggt 32413648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 253 - 318
Target Start/End: Complemental strand, 6844228 - 6844163
Alignment:
Q  253 caatataagggtgggaatacgtttccaaagatacttccatcttgtggacaaaatgcaagtttgaac 318  Q
    ||||||||| ||||||| | ||||||||||||  ||||||||| |||| | |||||||||||||||    
T  6844228 caatataagagtgggaagatgtttccaaagattgttccatcttttggatagaatgcaagtttgaac 6844163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 287 - 372
Target Start/End: Complemental strand, 14677238 - 14677153
Alignment:
Q  287 ttccatcttgtggacaaaatgcaagtttgaacggcatgtttggtattacaaaatgacaaaatatgaaggagaacacagtcgggtaa 372  Q
    ||||||||||| ||||||| ||||||| ||||  | | |||||| ||  ||||||||||||||||||||| ||||| || ||||||    
T  14677238 ttccatcttgtagacaaaacgcaagttcgaacaacttctttggtgtttaaaaatgacaaaatatgaaggataacactgttgggtaa 14677153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 266 - 318
Target Start/End: Original strand, 44501441 - 44501493
Alignment:
Q  266 ggaatacgtttccaaagatacttccatcttgtggacaaaatgcaagtttgaac 318  Q
    |||| |||||||||||||| ||||||||| | ||||||||||||||| |||||    
T  44501441 ggaagacgtttccaaagatccttccatctgggggacaaaatgcaagtctgaac 44501493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 250 - 359
Target Start/End: Complemental strand, 35335953 - 35335844
Alignment:
Q  250 atgcaatataagggtgggaatacgtttccaaagatacttccatcttgtggacaaaatgcaagtttgaacggcatgtttggtattacaaaatgacaaaata 349  Q
    |||||||||||| || |||||||||||||| ||||  ||||||||| ||||||||| ||||||||||||  | ||||||| ||   | |||||||||||     
T  35335953 atgcaatataagtgttggaatacgtttccatagatgtttccatcttttggacaaaacgcaagtttgaacaacttgtttggaatgtaataatgacaaaatg 35335854  T
Q  350 tgaaggagaa 359  Q
    ||||| ||||    
T  35335853 tgaagtagaa 35335844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 258 - 330
Target Start/End: Original strand, 27701888 - 27701960
Alignment:
Q  258 taagggtgggaatacgtttccaaagatacttccatcttgtggacaaaatgcaagtttgaacggcatgtttggt 330  Q
    ||||||| |||| ||||||||| ||||  |||||||||||||| | ||||  |||||||||||||||||||||    
T  27701888 taagggttggaagacgtttccagagattgttccatcttgtggaaagaatggtagtttgaacggcatgtttggt 27701960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 275 - 321
Target Start/End: Original strand, 43864058 - 43864104
Alignment:
Q  275 ttccaaagatacttccatcttgtggacaaaatgcaagtttgaacggc 321  Q
    ||||||||||   |||||||| |||||||||||||||||||||||||    
T  43864058 ttccaaagattgatccatcttttggacaaaatgcaagtttgaacggc 43864104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 258 - 319
Target Start/End: Original strand, 43875208 - 43875269
Alignment:
Q  258 taagggtgggaatacgtttccaaagatacttccatcttgtggacaaaatgcaagtttgaacg 319  Q
    |||| ||||||| ||  ||||||||||   |||||||| |||||||||||||||||||||||    
T  43875208 taagagtgggaagactcttccaaagattgatccatcttttggacaaaatgcaagtttgaacg 43875269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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