View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18163_high_1 (Length: 599)

Name: NF18163_high_1
Description: NF18163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18163_high_1
NF18163_high_1
[»] chr5 (2 HSPs)
chr5 (26-589)||(7554650-7555211)
chr5 (43-94)||(913001-913052)
[»] scaffold0091 (1 HSPs)
scaffold0091 (44-94)||(5905-5955)
[»] chr8 (3 HSPs)
chr8 (44-94)||(5226488-5226538)
chr8 (45-94)||(34563137-34563186)
chr8 (45-93)||(6950223-6950271)
[»] chr7 (2 HSPs)
chr7 (46-92)||(43318658-43318704)
chr7 (44-93)||(753339-753388)
[»] chr6 (2 HSPs)
chr6 (45-94)||(10150389-10150438)
chr6 (44-94)||(14340937-14340987)
[»] chr4 (1 HSPs)
chr4 (44-93)||(18512554-18512603)
[»] chr1 (1 HSPs)
chr1 (46-93)||(3224311-3224358)
[»] chr3 (3 HSPs)
chr3 (44-94)||(2621051-2621101)
chr3 (44-94)||(44240049-44240099)
chr3 (41-94)||(38462164-38462217)


Alignment Details
Target: chr5 (Bit Score: 504; Significance: 0; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 504; E-Value: 0
Query Start/End: Original strand, 26 - 589
Target Start/End: Original strand, 7554650 - 7555211
Alignment:
Q  26 aattaatggttaaacttaggataaacaacttaatcaaatgcctatagcataaacatttatcatataagttataagctgttttcattaacacctgactagc 125  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7554650 aattaatggttaaacttaggataaacaacttaatcaaatgcgtatagcataaacatttatcatataagttataagctgttttcattaacacctgactagc 7554749  T
Q  126 ttgtagagttaagccgaacatattagctagtatgtgattttggttaggaaaatatgcagcaaactttaaagccatgaatatgtaaacaacctaaagatga 225  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7554750 ttgtagaattaagccgaacatattagctagtatgtgattttggttaggaaaatatgcagcaaactttaaagccatgaatatgtaaacaacctaaagatga 7554849  T
Q  226 taaatgtgatcgattgaaatgaaattgttgtgttcacattgacacttgagtagagtataaaagatgatgatttgtgagtttaacttgtgactctcatgcc 325  Q
    |||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  7554850 taaatgtgattgattgaaatgaaaatgttgtgttcacattgacacttgagtagagtacaaaagatgatgatttgtgagtttaacttgtgactctcatgcc 7554949  T
Q  326 aaatgatttaaaagagtagcgtgtttagatcttttgggtaatttaaaggtcctaggcaaggcacattgaaaccattttgttgtatcttgaaactgttcaa 425  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7554950 aaatgatttaaaagagtagcgtgtttagatcttttgggtaatttaaaggtcctaggcaaggcacattgaaaccattttgttgtatcttgaaactgttcaa 7555049  T
Q  426 caacatcaggactgggcaacnnnnnnngttaaaagctgaattggatacctatattaagtatcagggaagcatccaaagtatcggcattagatacgaggaa 525  Q
    ||||||||||||||||||||       |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  7555050 caacatcaggactgggcaactttttttgttaaaagctgaattggatacctataataagtatcagggaagcatccaaagtatcggcattagatacgaggaa 7555149  T
Q  526 tgtatttgatatgatgcaagcatcggtgcttcatagaataaatatgtgaattcattcttctgtg 589  Q
    ||||||||||||||| |||||||||||||||||||||||||  |||||||||||||||||||||    
T  7555150 tgtatttgatatgattcaagcatcggtgcttcatagaataa--atgtgaattcattcttctgtg 7555211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 43 - 94
Target Start/End: Complemental strand, 913052 - 913001
Alignment:
Q  43 aggataaacaacttaatcaaatgcctatagcataaacatttatcatataagt 94  Q
    ||||||||||||||||| |||||| ||||  ||||||| |||||||||||||    
T  913052 aggataaacaacttaattaaatgcttatactataaacacttatcatataagt 913001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0091 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: scaffold0091
Description:

Target: scaffold0091; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 44 - 94
Target Start/End: Original strand, 5905 - 5955
Alignment:
Q  44 ggataaacaacttaatcaaatgcctatagcataaacatttatcatataagt 94  Q
    ||||||||||||||||||| ||  |||||||||||||||||||||||||||    
T  5905 ggataaacaacttaatcaactgtttatagcataaacatttatcatataagt 5955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 44 - 94
Target Start/End: Original strand, 5226488 - 5226538
Alignment:
Q  44 ggataaacaacttaatcaaatgcctatagcataaacatttatcatataagt 94  Q
    ||||||||||||||||||| ||  |||||||||||||||||||||||||||    
T  5226488 ggataaacaacttaatcaactgtttatagcataaacatttatcatataagt 5226538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 45 - 94
Target Start/End: Original strand, 34563137 - 34563186
Alignment:
Q  45 gataaacaacttaatcaaatgcctatagcataaacatttatcatataagt 94  Q
    ||||||||||||||| ||| || |||||||||||||||||||||||||||    
T  34563137 gataaacaacttaattaaacgcttatagcataaacatttatcatataagt 34563186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 45 - 93
Target Start/End: Original strand, 6950223 - 6950271
Alignment:
Q  45 gataaacaacttaatcaaatgcctatagcataaacatttatcatataag 93  Q
    ||||||||||||||| || ||| ||||||||||||  ||||||||||||    
T  6950223 gataaacaacttaattaagtgcttatagcataaacgcttatcatataag 6950271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 46 - 92
Target Start/End: Complemental strand, 43318704 - 43318658
Alignment:
Q  46 ataaacaacttaatcaaatgcctatagcataaacatttatcatataa 92  Q
    |||||||||||||| ||||||||||||| ||| ||||||||||||||    
T  43318704 ataaacaacttaattaaatgcctatagcgtaagcatttatcatataa 43318658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 44 - 93
Target Start/End: Complemental strand, 753388 - 753339
Alignment:
Q  44 ggataaacaacttaatcaaatgcctatagcataaacatttatcatataag 93  Q
    |||||||||||||||| || ||  ||||||||||||||||||||||||||    
T  753388 ggataaacaacttaattaagtgtttatagcataaacatttatcatataag 753339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000009; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 45 - 94
Target Start/End: Complemental strand, 10150438 - 10150389
Alignment:
Q  45 gataaacaacttaatcaaatgcctatagcataaacatttatcatataagt 94  Q
    |||||||||||||||||||||| |||| |||||||  |||||||||||||    
T  10150438 gataaacaacttaatcaaatgcatataacataaacggttatcatataagt 10150389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 44 - 94
Target Start/End: Complemental strand, 14340987 - 14340937
Alignment:
Q  44 ggataaacaacttaatcaaatgcctatagcataaacatttatcatataagt 94  Q
    |||||||||||||||| || ||| |||| |||||||| |||||||||||||    
T  14340987 ggataaacaacttaattaagtgcttataacataaacacttatcatataagt 14340937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 44 - 93
Target Start/End: Complemental strand, 18512603 - 18512554
Alignment:
Q  44 ggataaacaacttaatcaaatgcctatagcataaacatttatcatataag 93  Q
    |||||| ||||||||| || ||| ||||||||||||||||||||||||||    
T  18512603 ggataagcaacttaattaagtgcttatagcataaacatttatcatataag 18512554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 46 - 93
Target Start/End: Original strand, 3224311 - 3224358
Alignment:
Q  46 ataaacaacttaatcaaatgcctatagcataaacatttatcatataag 93  Q
    ||||||||||||||||| ||| |||| ||||| |||||||||||||||    
T  3224311 ataaacaacttaatcaagtgcttataacataagcatttatcatataag 3224358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 44 - 94
Target Start/End: Complemental strand, 2621101 - 2621051
Alignment:
Q  44 ggataaacaacttaatcaaatgcctatagcataaacatttatcatataagt 94  Q
    |||||||||||||||| |||||| ||| ||||||||| |||| ||||||||    
T  2621101 ggataaacaacttaatgaaatgcttattgcataaacacttataatataagt 2621051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 44 - 94
Target Start/End: Original strand, 44240049 - 44240099
Alignment:
Q  44 ggataaacaacttaatcaaatgcctatagcataaacatttatcatataagt 94  Q
    |||||||||||||||  || ||| |||||||||| ||||||||||||||||    
T  44240049 ggataaacaacttaagtaagtgcttatagcataatcatttatcatataagt 44240099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 41 - 94
Target Start/End: Original strand, 38462164 - 38462217
Alignment:
Q  41 ttaggataaacaacttaatcaaatgcctatagcataaacatttatcatataagt 94  Q
    ||||||||||||| ||||| ||  ||||| |||||||||| |||||||||||||    
T  38462164 ttaggataaacaagttaattaagcgcctaaagcataaacacttatcatataagt 38462217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University