View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18163_high_13 (Length: 290)
Name: NF18163_high_13
Description: NF18163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18163_high_13 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 290
Target Start/End: Complemental strand, 9336808 - 9336533
Alignment:
| Q |
1 |
atcagaatggaaggatagtcgttttcattcgaaccgggaggtgcgaagtgaagtgaatatcgatttggcttctatctgtaaatccatcaccgatcctaag |
100 |
Q |
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| T |
9336808 |
atcagaatggaaggatagtctttttcattcgaactgggaggtgcgaagtgaagcgaatatcgatttggcttctatctgtaaatccatcatcgatcctaag |
9336709 |
T |
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| Q |
101 |
gatcttcgcatccttgaattcggttaatgtctcagtttttggtaggtagggtttttgcttttaacggtgatttgggtggagttagaactttgaatctgtt |
200 |
Q |
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| T |
9336708 |
gaccctcgcatccttgaattcggttaatgtttcagtttttggtaggtagggtttttgcttttaacggtgatttgggtggagttagaactttgaatctggt |
9336609 |
T |
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| Q |
201 |
aggtcattttctcaaaaagactgtggtggaaagactgtgacaaggaatatcacatgaagagaaagccaacacagtcccaaccacatatat |
290 |
Q |
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| T |
9336608 |
aggtcattttctcaaaaagac--------------tgtgacaaggaatatcacacgaagagaaagccaagacagtcccaaccacatatat |
9336533 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 56 - 126
Target Start/End: Complemental strand, 8209426 - 8209356
Alignment:
| Q |
56 |
aatatcgatttggcttctatctgtaaatccatcaccgatcctaaggatcttcgcatccttgaattcggtta |
126 |
Q |
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| T |
8209426 |
aatatcgatttagcttctctctttcactccatcaccgatcctaacgatcctcgcattcgtcaattcggtta |
8209356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 41 - 126
Target Start/End: Complemental strand, 42365268 - 42365183
Alignment:
| Q |
41 |
gtgcgaagtgaagtgaatatcgatttggcttctatctgtaaatccatcaccgatcctaaggatcttcgcatccttgaattcggtta |
126 |
Q |
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| T |
42365268 |
gtgcgaaatgaagccaatattgatctggcttctctctgtgactcaatcaccgatcctaaagaccctcgcatccgtgaattcggtta |
42365183 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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