View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18163_high_16 (Length: 277)
Name: NF18163_high_16
Description: NF18163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18163_high_16 |
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Alignment Details
Target: chr8 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 9336533 - 9336312
Alignment:
| Q |
1 |
tacagccacaagaacattaatcagaagagtgaagaccaaaaccagctggacaacaatgttgatgaacgagttacttgtactcactctcattttcgatatg |
100 |
Q |
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| T |
9336533 |
tacagccacaagaacattaatcagaagagtgaagaccaaaaccagctggacaacaatgttgatgaacgagttacttgtactcactctcattttcgatatg |
9336434 |
T |
|
| Q |
101 |
atctattattaatctttgcagttcaaggnnnnnnngaatgttcctgaataaatgatcgcatatatcctaaccaaatatccctcaataatgaatacatgac |
200 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
9336433 |
atctattattaatctttgcagttcaaggaaaaaaagaatgttcctgaataaatgatcgcatatatcctaaccaaatatccctcaacaatgaatacatgac |
9336334 |
T |
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| Q |
201 |
acgtatacttataccagggact |
222 |
Q |
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|| |||||||||||||| |||| |
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| T |
9336333 |
acatatacttataccagagact |
9336312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 222 - 260
Target Start/End: Original strand, 4903301 - 4903339
Alignment:
| Q |
222 |
ttacttcttcatgatttgctcgaggatttgaatgggttt |
260 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
4903301 |
ttacttcttcatgatttgctcgaggatttgaatgggttt |
4903339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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