View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18163_high_18 (Length: 263)
Name: NF18163_high_18
Description: NF18163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18163_high_18 |
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Alignment Details
Target: chr6 (Bit Score: 231; Significance: 1e-127; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 746360 - 746114
Alignment:
| Q |
1 |
agcatcaatatgcttgctagggcaatagtaggagctttgtgcacttgaaaccataagagaatgttgagagctttgtcccaatcgaattggccaaaaccct |
100 |
Q |
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| T |
746360 |
agcatcaatatgcttgctagggtaatagtaggagctttgtgcactggaaaccataagagaatgttgagagctttgtcccaatcgaattggccaaaaccct |
746261 |
T |
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| Q |
101 |
aagggatttttatcacaaatattcatcaatggagagtaaattttctcttgagatatgttggtatgcatgagattgaagttggtacctgaatttgaggtca |
200 |
Q |
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| T |
746260 |
aagggatttttatcacaaatattcatcaatggagagtaaattttaacttgagatatgttggtatgcatgagattgaagttggtacctgaatttgaggtca |
746161 |
T |
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| Q |
201 |
agtaaggagaactaataaggttattgaccttgtatgattcatctttt |
247 |
Q |
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| T |
746160 |
agtaaggagaactaataaggttattgaccttgtatgattcatctttt |
746114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 32 - 224
Target Start/End: Complemental strand, 752259 - 752067
Alignment:
| Q |
32 |
gagctttgtgcacttgaaaccataagagaatgttgagagctttgtcccaatcgaattggccaaaaccctaagggatttttatcacaaatattcatcaatg |
131 |
Q |
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| T |
752259 |
gagctttgtgcagttgaaaccatatgagagggttgagagctttgtcctgatataagtggccaaaaccctaaagggtttttatcattgatattcatcaatg |
752160 |
T |
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| Q |
132 |
gagagtaaattttctcttgagatatgttggtatgcatgagattgaagttggtacctgaatttgaggtcaagtaaggagaactaataaggttat |
224 |
Q |
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| T |
752159 |
gtggataaatgtgtgcttgagacatgttgttttgcgggagattgaagtagctacttggatttgagtccaagtaaggagaactattaaggttat |
752067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 26 - 179
Target Start/End: Original strand, 7327168 - 7327321
Alignment:
| Q |
26 |
tagtaggagctttgtgcacttgaaaccataagagaatgttgagagctttgtcccaatcgaattggccaaaaccctaagggatttttatcacaaatattca |
125 |
Q |
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| T |
7327168 |
tagtatgagctttgcgcattggaaatcatagaagaaggttgagagctttgtccgagttgaagttgccaaaaccctaatggggttttatcattaatattca |
7327267 |
T |
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| Q |
126 |
tcaatggagagtaaattttctcttgagatatgttggtatgcatgagattgaagt |
179 |
Q |
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| T |
7327268 |
tcaatggaggatgaatttttgcttcaaacatgttgttttgcatgagattgaagt |
7327321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 76
Target Start/End: Complemental strand, 752299 - 752251
Alignment:
| Q |
28 |
gtaggagctttgtgcacttgaaaccataagagaatgttgagagctttgt |
76 |
Q |
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| T |
752299 |
gtagaagctttgtgcactagaaaccataggagaaggttgagagctttgt |
752251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 58 - 242
Target Start/End: Original strand, 51792290 - 51792474
Alignment:
| Q |
58 |
agaatgttgagagctttgtcccaatcgaattggccaaaaccctaagggatttttatcacaaatattcatcaatggagagtaaattttctcttgagatatg |
157 |
Q |
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| T |
51792290 |
agaaggttgagagctttgtcccgattgaagtggccaaaaccctaaggggtttttatcactaatattcatcattggaggataagtttgtgcttgagacatg |
51792389 |
T |
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| Q |
158 |
ttggtatgcatgagattgaagttggtacctgaatttgaggtcaagtaaggagaactaataaggttattgaccttgtatgattcat |
242 |
Q |
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| T |
51792390 |
gaattttgcatgagattgaagtagtaacttggatttggggtcaaggaaggagtactgataagtttatctaccttgtgtgattcat |
51792474 |
T |
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