View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18163_high_2 (Length: 503)
Name: NF18163_high_2
Description: NF18163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18163_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 430; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 14 - 486
Target Start/End: Original strand, 41249399 - 41249864
Alignment:
| Q |
14 |
gaaatgatacaggaacacaaacaaacttgttattgttagaccaaattaaatatatcactataaactctaaggcagactcgttttgctggtcctctcatat |
113 |
Q |
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| T |
41249399 |
gaaatgatacaggaacacaaacaaacttgttattgttagaccaaat-----atatcactataaactctaaggcagactcgttttgctggtcctctcatat |
41249493 |
T |
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| Q |
114 |
ttctgatcgtgatgtaaaaatatacagaatagatgctccccaacctctgttcacaacgtggttgctaatcagtacattacatggatatcttgcttggata |
213 |
Q |
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| T |
41249494 |
ttctgatcgtgatgtaaaaatatacagaatagatgctccccaacctctgttcacaacgtggtttctaatcagtacattacatggatatcttgcttggata |
41249593 |
T |
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| Q |
214 |
taattggtacttgcaacgtggttgtattccttttcttgtatatatgtacctatacactgtaaatttgctctgttctctatcttttgatgaaataatggac |
313 |
Q |
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| T |
41249594 |
taattggtacttgcaacgtggttgtattccttttcttgtatatatgtaccta--cactgtaaatttgctctgttctctatcttttgatgaaataatggac |
41249691 |
T |
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| Q |
314 |
ggtctattactcagtaaaacatgtcaatatggcgaagacgtacaaattacatttactcaacaaaaagacaagacggtatattttaaagaaattgcaaccg |
413 |
Q |
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| T |
41249692 |
ggtctattactcagtaaaacatgtcaatatggcgaagacgtacaaattacatttactcaacaaaaagacaagacggtatattttaaagaaattgcaaccg |
41249791 |
T |
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| Q |
414 |
tagctttttgtgtgtgcatataaaaaaccagttgaataatgtatatttcatgctatgcaaaacatcataggat |
486 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
41249792 |
tagctttttgtgtgtgcatatataaaaccagttgaataatgtatatttcatgctatgcaaaacatcagaggat |
41249864 |
T |
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