View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18163_high_3 (Length: 472)

Name: NF18163_high_3
Description: NF18163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18163_high_3
NF18163_high_3
[»] chr5 (18 HSPs)
chr5 (30-158)||(43554512-43554633)
chr5 (85-154)||(39695995-39696064)
chr5 (22-130)||(36577616-36577717)
chr5 (19-58)||(6247689-6247728)
chr5 (20-82)||(7997108-7997171)
chr5 (6-65)||(38464301-38464361)
chr5 (19-89)||(21576686-21576756)
chr5 (19-65)||(17123119-17123165)
chr5 (19-118)||(26205695-26205789)
chr5 (19-82)||(2419921-2419985)
chr5 (41-140)||(21137697-21137789)
chr5 (22-72)||(30183624-30183675)
chr5 (19-66)||(39695952-39695999)
chr5 (19-89)||(43564929-43564999)
chr5 (19-53)||(2548464-2548498)
chr5 (19-53)||(14674333-14674367)
chr5 (84-142)||(25863210-25863268)
chr5 (22-82)||(36642696-36642755)
[»] chr2 (23 HSPs)
chr2 (19-148)||(23354582-23354711)
chr2 (20-148)||(23354926-23355054)
chr2 (19-154)||(25544475-25544611)
chr2 (19-118)||(11307935-11308033)
chr2 (19-153)||(38919201-38919335)
chr2 (85-141)||(24011043-24011099)
chr2 (19-89)||(37419802-37419872)
chr2 (19-82)||(18889520-18889584)
chr2 (22-89)||(37411188-37411255)
chr2 (19-65)||(18840954-18841001)
chr2 (19-66)||(25072754-25072801)
chr2 (19-89)||(28596517-28596587)
chr2 (20-89)||(2438661-2438730)
chr2 (19-53)||(18420364-18420398)
chr2 (84-150)||(19573976-19574042)
chr2 (19-72)||(26769586-26769640)
chr2 (84-150)||(37986777-37986843)
chr2 (103-148)||(22085004-22085049)
chr2 (56-141)||(30563416-30563501)
chr2 (18-66)||(44860401-44860450)
chr2 (19-114)||(12601142-12601238)
chr2 (15-82)||(17651617-17651685)
chr2 (19-82)||(41849355-41849419)
[»] chr8 (23 HSPs)
chr8 (19-162)||(13009423-13009566)
chr8 (19-142)||(39820435-39820546)
chr8 (60-153)||(13845229-13845322)
chr8 (20-150)||(44067514-44067644)
chr8 (19-158)||(40063941-40064080)
chr8 (19-89)||(29510234-29510304)
chr8 (19-80)||(38487158-38487220)
chr8 (19-90)||(14513109-14513181)
chr8 (19-82)||(36450695-36450758)
chr8 (17-158)||(2035729-2035868)
chr8 (22-80)||(12559044-12559103)
chr8 (19-81)||(30067969-30068032)
chr8 (19-118)||(15816059-15816158)
chr8 (19-56)||(16641910-16641947)
chr8 (19-95)||(33389296-33389372)
chr8 (19-118)||(3911140-3911240)
chr8 (89-141)||(35431140-35431192)
chr8 (19-72)||(8343391-8343445)
chr8 (73-139)||(16869699-16869765)
chr8 (19-56)||(25566911-25566948)
chr8 (89-141)||(1676719-1676771)
chr8 (19-66)||(8343037-8343085)
chr8 (19-82)||(24413500-24413563)
[»] chr4 (20 HSPs)
chr4 (19-154)||(3144588-3144717)
chr4 (22-150)||(20743210-20743339)
chr4 (19-137)||(17876166-17876284)
chr4 (19-149)||(31243477-31243608)
chr4 (30-148)||(6273944-6274062)
chr4 (19-150)||(53381531-53381653)
chr4 (19-118)||(944603-944697)
chr4 (19-150)||(7012064-7012196)
chr4 (19-150)||(24343505-24343631)
chr4 (13-95)||(3947696-3947777)
chr4 (19-89)||(23292927-23292997)
chr4 (30-151)||(32910548-32910670)
chr4 (19-82)||(18513176-18513240)
chr4 (84-128)||(23386166-23386210)
chr4 (19-81)||(35161092-35161154)
chr4 (19-72)||(19482743-19482797)
chr4 (14-56)||(40784034-40784076)
chr4 (41-96)||(10133749-10133805)
chr4 (97-141)||(39507127-39507171)
chr4 (99-139)||(49659533-49659573)
[»] chr7 (21 HSPs)
chr7 (19-158)||(29812599-29812733)
chr7 (19-141)||(23751907-23752017)
chr7 (19-153)||(7133213-7133342)
chr7 (23-150)||(43249991-43250118)
chr7 (19-150)||(4017730-4017855)
chr7 (19-95)||(5409772-5409847)
chr7 (19-150)||(38804490-38804616)
chr7 (19-89)||(598256-598326)
chr7 (19-66)||(32287404-32287452)
chr7 (19-89)||(21864856-21864926)
chr7 (19-89)||(21880200-21880270)
chr7 (83-141)||(17780078-17780136)
chr7 (19-94)||(32093955-32094030)
chr7 (30-82)||(12278889-12278942)
chr7 (56-154)||(22683720-22683820)
chr7 (84-137)||(23930230-23930283)
chr7 (19-67)||(40131940-40131989)
chr7 (19-87)||(41229238-41229307)
chr7 (18-55)||(49107887-49107924)
chr7 (89-141)||(12278842-12278894)
chr7 (97-141)||(32855361-32855405)
[»] chr3 (27 HSPs)
chr3 (19-141)||(52369782-52369905)
chr3 (19-167)||(25074768-25074913)
chr3 (23-150)||(14223793-14223914)
chr3 (84-150)||(25892458-25892524)
chr3 (19-147)||(27903633-27903756)
chr3 (19-150)||(8903430-8903553)
chr3 (19-77)||(21211353-21211412)
chr3 (19-150)||(15864831-15864950)
chr3 (92-166)||(34189409-34189483)
chr3 (19-82)||(14216958-14217021)
chr3 (19-82)||(14223087-14223150)
chr3 (19-89)||(41961580-41961650)
chr3 (18-88)||(21149116-21149186)
chr3 (56-153)||(25326421-25326512)
chr3 (21-54)||(21367349-21367382)
chr3 (19-56)||(49651717-49651754)
chr3 (94-150)||(1830341-1830397)
chr3 (19-89)||(14209172-14209242)
chr3 (20-82)||(24204983-24205046)
chr3 (19-89)||(55401123-55401193)
chr3 (91-145)||(3730167-3730221)
chr3 (19-88)||(37077418-37077488)
chr3 (84-141)||(12704652-12704709)
chr3 (19-67)||(17276796-17276845)
chr3 (19-95)||(27505294-27505369)
chr3 (19-67)||(27277781-27277829)
chr3 (19-66)||(34185053-34185101)
[»] chr6 (23 HSPs)
chr6 (19-141)||(34446572-34446689)
chr6 (86-150)||(6389741-6389805)
chr6 (84-141)||(17168458-17168515)
chr6 (40-139)||(2153838-2153937)
chr6 (19-141)||(26247433-26247549)
chr6 (19-63)||(6389806-6389850)
chr6 (19-166)||(34894969-34895111)
chr6 (19-89)||(34595182-34595252)
chr6 (19-89)||(4877991-4878060)
chr6 (79-141)||(19602171-19602233)
chr6 (19-150)||(9107300-9107431)
chr6 (18-66)||(31959220-31959269)
chr6 (19-56)||(32839572-32839609)
chr6 (19-89)||(1191644-1191711)
chr6 (21-67)||(9025448-9025495)
chr6 (21-66)||(8389411-8389457)
chr6 (19-72)||(8776909-8776963)
chr6 (17-55)||(27903961-27903999)
chr6 (89-154)||(13689193-13689258)
chr6 (19-95)||(17327591-17327666)
chr6 (85-158)||(30781290-30781363)
chr6 (19-66)||(4388150-4388198)
chr6 (20-95)||(12696372-12696446)
[»] scaffold0652 (1 HSPs)
scaffold0652 (18-89)||(402-473)
[»] chr1 (18 HSPs)
chr1 (19-141)||(42004883-42004999)
chr1 (20-95)||(1486646-1486720)
chr1 (86-154)||(39101179-39101247)
chr1 (90-156)||(6573981-6574047)
chr1 (19-95)||(20157285-20157361)
chr1 (19-67)||(34741916-34741964)
chr1 (19-89)||(18190049-18190119)
chr1 (19-73)||(18556386-18556441)
chr1 (107-154)||(23440004-23440051)
chr1 (19-89)||(32899938-32900009)
chr1 (19-89)||(37598879-37598949)
chr1 (20-89)||(42359391-42359460)
chr1 (84-141)||(6936395-6936452)
chr1 (19-67)||(19562557-19562605)
chr1 (23-67)||(23219608-23219653)
chr1 (15-52)||(23705417-23705454)
chr1 (19-56)||(42325640-42325677)
chr1 (19-150)||(47989496-47989626)
[»] scaffold0003 (2 HSPs)
scaffold0003 (19-118)||(241624-241723)
scaffold0003 (19-68)||(236915-236965)
[»] scaffold0049 (1 HSPs)
scaffold0049 (19-138)||(56932-57052)
[»] scaffold0168 (1 HSPs)
scaffold0168 (19-53)||(21372-21406)
[»] scaffold0128 (1 HSPs)
scaffold0128 (17-66)||(32774-32824)
[»] scaffold0199 (1 HSPs)
scaffold0199 (89-141)||(1956-2008)


Alignment Details
Target: chr5 (Bit Score: 78; Significance: 4e-36; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 30 - 158
Target Start/End: Complemental strand, 43554633 - 43554512
Alignment:
Q  30 gacacttctcggattaggtgtgtcccgtgtcggacacgcgtcggtgtccgacatcgacaccgacacgacacctatgattacactaaatttaatcattttc 129  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||      ||||||||||||||||||||||||||||||||||  |||||||||    
T  43554633 gacacttctcggattaggcgtgtcccgtgtcggacacgcgtcggtgtcc------gacaccgacacgacacctatgattacactaaattatatcattttc 43554540  T
Q  130 ttaaattattatatgtgtcggtgtccgtg 158  Q
    | ||||||||||| ||||| |||||||||    
T  43554539 tcaaattattatacgtgtc-gtgtccgtg 43554512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 85 - 154
Target Start/End: Original strand, 39695995 - 39696064
Alignment:
Q  85 gacaccgacacgacacctatgattacactaaatttaatcattttcttaaattattatatgtgtcggtgtc 154  Q
    ||||||||||||||||||||||||||||||||||  |||||||||| |||||||| |  |||||||||||    
T  39695995 gacaccgacacgacacctatgattacactaaattatatcattttctcaaattattgtcggtgtcggtgtc 39696064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 22 - 130
Target Start/End: Original strand, 36577616 - 36577717
Alignment:
Q  22 gaagcacagacacttctcggattaggtgtgtcccgtgtcggacacgcgtcggtgtccgacatcgacaccgacacgacacctatgattacactaaatttaa 121  Q
    ||||||||||||||||| |||||||| || |||||||||||| |||| ||||||       |||||||||||||||||| ||| |||| ||||||||  |    
T  36577616 gaagcacagacacttcttggattaggcgtatcccgtgtcggatacgcatcggtg-------tcgacaccgacacgacacatataattatactaaattata 36577708  T
Q  122 tcattttct 130  Q
    |||||||||    
T  36577709 tcattttct 36577717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 19 - 58
Target Start/End: Complemental strand, 6247728 - 6247689
Alignment:
Q  19 tatgaagcacagacacttctcggattaggtgtgtcccgtg 58  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  6247728 tatgaagcacagacacttctcggattaggtgtgtcccgtg 6247689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 20 - 82
Target Start/End: Original strand, 7997108 - 7997171
Alignment:
Q  20 atgaagcacagacacttctcggattaggtgtgtcccg-tgtcggacacgcgtcggtgtccgaca 82  Q
    |||||||||| |||||||||| ||||||||||||| | ||||||||||||||| ||||||||||    
T  7997108 atgaagcacaaacacttctcgaattaggtgtgtcctgatgtcggacacgcgtcagtgtccgaca 7997171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 6 - 65
Target Start/End: Original strand, 38464301 - 38464361
Alignment:
Q  6 aaaggagatatcttatgaagcacagacacttctcggattaggtgtgtccc-gtgtcggaca 65  Q
    |||||||| | | ||||||||||||||||| ||||||||||||||||||| ||||||||||    
T  38464301 aaaggagacaacctatgaagcacagacactcctcggattaggtgtgtcccggtgtcggaca 38464361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 19 - 89
Target Start/End: Original strand, 21576686 - 21576756
Alignment:
Q  19 tatgaagcacagacacttctcggattaggtgtgtccc-gtgtcggacacgcgtcggtgtccgacatcgacac 89  Q
    |||||||||| |||||| ||||||||||| ||||||| ||||| |||||| ||| |||||||||||||||||    
T  21576686 tatgaagcacggacactcctcggattaggcgtgtcccagtgtcagacacgtgtc-gtgtccgacatcgacac 21576756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 19 - 65
Target Start/End: Complemental strand, 17123165 - 17123119
Alignment:
Q  19 tatgaagcacagacacttctcggattaggtgtgtcccgtgtcggaca 65  Q
    |||||||||| |||||| ||||||||||| |||||||||||||||||    
T  17123165 tatgaagcacggacactcctcggattaggcgtgtcccgtgtcggaca 17123119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 19 - 118
Target Start/End: Original strand, 26205695 - 26205789
Alignment:
Q  19 tatgaagcacagacacttctcggattaggtgtgtcccg-tgtcggacacgcgtcggtgtccgacatcgacaccgacacgacacctatgattacactaaat 117  Q
    |||||||||| ||||| | | |||||| |||||||||| ||||||| |||||| ||||||      ||||||| |||||||||||||||||||||| |||    
T  26205695 tatgaagcacggacaccttttggattacgtgtgtcccggtgtcggatacgcgttggtgtc------cgacaccaacacgacacctatgattacactgaat 26205788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 82
Target Start/End: Complemental strand, 2419985 - 2419921
Alignment:
Q  19 tatgaagcacagacacttctcggattaggtgtgtccc-gtgtcggacacgcgtcggtgtccgaca 82  Q
    |||||||||| ||||||  |||||||||||||||||| | ||||||||||| |||||||| ||||    
T  2419985 tatgaagcacggacactcatcggattaggtgtgtcccggggtcggacacgcatcggtgtctgaca 2419921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 41 - 140
Target Start/End: Complemental strand, 21137789 - 21137697
Alignment:
Q  41 gattaggtgtgtcccg-tgtcggacacgcgtcggtgtccgacatcgacaccgacacgacacctatgattacactaaatttaatcattttcttaaattatt 139  Q
    |||||||||||||||| |||||||||||||| ||||||||        ||||||||||||||||||||| |||| ||||   ||||||||| | ||||||    
T  21137789 gattaggtgtgtcccggtgtcggacacgcgttggtgtccg--------accgacacgacacctatgatttcactgaattacgtcattttctcagattatt 21137698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 22 - 72
Target Start/End: Complemental strand, 30183675 - 30183624
Alignment:
Q  22 gaagcacagacacttctcggattaggtgtgtccc-gtgtcggacacgcgtcg 72  Q
    ||||||||||||||||||| |||||| ||||||| |||||||||||| ||||    
T  30183675 gaagcacagacacttctcgaattaggcgtgtcccagtgtcggacacgtgtcg 30183624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 66
Target Start/End: Original strand, 39695952 - 39695999
Alignment:
Q  19 tatgaagcacagacacttctcggattaggtgtgtcccgtgtcggacac 66  Q
    |||||||||| |||||| || |||||||| ||||||||||||||||||    
T  39695952 tatgaagcaccgacactcctaggattaggcgtgtcccgtgtcggacac 39695999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 43564999 - 43564929
Alignment:
Q  19 tatgaagcacagacacttctcggattaggtgtgtccc-gtgtcggacacgcgtcggtgtccgacatcgacac 89  Q
    |||||||||| |||||||||||||||||| ||||||| | |||||||||  ||| |||||||||| ||||||    
T  43564999 tatgaagcacggacacttctcggattaggcgtgtcccggcgtcggacacatgtc-gtgtccgacaccgacac 43564929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 53
Target Start/End: Complemental strand, 2548498 - 2548464
Alignment:
Q  19 tatgaagcacagacacttctcggattaggtgtgtc 53  Q
    ||||||||||||||||| |||||||||||||||||    
T  2548498 tatgaagcacagacactcctcggattaggtgtgtc 2548464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 53
Target Start/End: Complemental strand, 14674367 - 14674333
Alignment:
Q  19 tatgaagcacagacacttctcggattaggtgtgtc 53  Q
    ||||||||||||||||| |||||||||||||||||    
T  14674367 tatgaagcacagacactcctcggattaggtgtgtc 14674333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 84 - 142
Target Start/End: Complemental strand, 25863268 - 25863210
Alignment:
Q  84 cgacaccgacacgacacctatgattacactaaatttaatcattttcttaaattattata 142  Q
    |||||| |||||||||| ||| |||||||| ||||  |||||||||| |||||||||||    
T  25863268 cgacactgacacgacacttataattacactgaattatatcattttctcaaattattata 25863210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 22 - 82
Target Start/End: Original strand, 36642696 - 36642755
Alignment:
Q  22 gaagcacagacacttctcggattaggtgtgtcccgtgtcggacacgcgtcggtgtccgaca 82  Q
    ||||||| |||||| |||  |||||| ||||||||||||||||||| ||| ||||||||||    
T  36642696 gaagcaccgacactcctccaattaggcgtgtcccgtgtcggacacgtgtc-gtgtccgaca 36642755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 78; Significance: 4e-36; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 19 - 148
Target Start/End: Original strand, 23354582 - 23354711
Alignment:
Q  19 tatgaagcacagacacttctcggattaggtgtgtcccgtgtcggacacgcgtcggtgtccgacatcgacaccgacacgacacctatgattacactaaatt 118  Q
    |||||| ||| |||||| ||||||||||| |||||||||||| |||||  |||||||||||||  |||||||||||||||||||||||||||||||||||    
T  23354582 tatgaaccacggacactcctcggattaggcgtgtcccgtgtcagacaccggtcggtgtccgaccccgacaccgacacgacacctatgattacactaaatt 23354681  T
Q  119 taatcattttcttaaattattatatgtgtc 148  Q
      |||||||||| |||||||||| ||||||    
T  23354682 atatcattttctcaaattattatctgtgtc 23354711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 20 - 148
Target Start/End: Original strand, 23354926 - 23355054
Alignment:
Q  20 atgaagcacagacacttctcggattaggtgtgtcccgtgtcggacacgcgtcggtgtccgacatcgacaccgacacgacacctatgattacactaaattt 119  Q
    ||||||||  |||||| ||||||||||| |||||||||||| |||||| |||||||||| ||  ||||||||||| ||||||||||||| |||||||||     
T  23354926 atgaagcaaggacactcctcggattaggcgtgtcccgtgtcagacacgggtcggtgtccaaccccgacaccgacatgacacctatgattgcactaaatta 23355025  T
Q  120 aatcattttcttaaattattatatgtgtc 148  Q
     |||||||||| |||||||||| ||||||    
T  23355026 tatcattttctcaaattattatctgtgtc 23355054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 19 - 154
Target Start/End: Complemental strand, 25544611 - 25544475
Alignment:
Q  19 tatgaagcacagacacttctcggattaggtgtgtc-ccgtgtcggacacgcgtcggtgtccgacatcgacaccgacacgacacctatgattacactaaat 117  Q
    |||||| ||| ||||||| | |||||||||||||  || |||||||||| ||| |||||| ||||  ||||||||||||||||||||||||||||| |||    
T  25544611 tatgaaccacggacactttttggattaggtgtgtatccatgtcggacacacgttggtgtctgacactgacaccgacacgacacctatgattacactgaat 25544512  T
Q  118 ttaatcattttcttaaattattatatgtgtcggtgtc 154  Q
    |  |||||||||| ||||||||||| |||||||||||    
T  25544511 tatatcattttctcaaattattatacgtgtcggtgtc 25544475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 19 - 118
Target Start/End: Original strand, 11307935 - 11308033
Alignment:
Q  19 tatgaagcacagacacttctcggattaggtgtgtcccgtgtcggacacgcgtcggtgtccgacatcgacaccgacacgacacctatgattacactaaatt 118  Q
    |||||||||| |||||| ||||||||| |||| ||  ||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| ||||    
T  11307935 tatgaagcacggacactcctcggattaagtgtttcg-gtgtcggacacgcgtcggtgtccaacaccgacaccgacacgacacctatgattacactgaatt 11308033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 19 - 153
Target Start/End: Complemental strand, 38919335 - 38919201
Alignment:
Q  19 tatgaagcacagacacttctcggattaggtgtgtcccgtgtcggacacgcgtcggtgtccgacatcgacaccgacacgacacctatgattacactaaatt 118  Q
    ||||||||||| |||||  || ||||||  |||||| ||||||||||||| || || ||||||| ||||||  ||||||||||||||||||||||||| |    
T  38919335 tatgaagcacaaacactcttcagattagacgtgtcctgtgtcggacacgcatcagtatccgacaccgacactaacacgacacctatgattacactaaact 38919236  T
Q  119 taatcattttcttaaattattatatgtgtcggtgt 153  Q
      | |||||||| |||||||||| ||| |||||||    
T  38919235 ataacattttctcaaattattatctgtatcggtgt 38919201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 85 - 141
Target Start/End: Complemental strand, 24011099 - 24011043
Alignment:
Q  85 gacaccgacacgacacctatgattacactaaatttaatcattttcttaaattattat 141  Q
    ||||||||| ||||||||||||||||||||||||   ||||||||| ||||||||||    
T  24011099 gacaccgacgcgacacctatgattacactaaattatgtcattttctcaaattattat 24011043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 37419872 - 37419802
Alignment:
Q  19 tatgaagcacagacacttctcggattaggtgtgtccc-gtgtcggacacgcgtcggtgtccgacatcgacac 89  Q
    |||||||||| |||||| ||||||||||| ||||||| ||||||||||||| || |||||||||| ||||||    
T  37419872 tatgaagcacggacactcctcggattaggcgtgtcccggtgtcggacacgcatc-gtgtccgacaccgacac 37419802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 82
Target Start/End: Original strand, 18889520 - 18889584
Alignment:
Q  19 tatgaagcacagacacttctcggattaggtgtgtcccg-tgtcggacacgcgtcggtgtccgaca 82  Q
    ||||||||| ||||||| || || |||||||||||| | ||||||||| ||||||||||||||||    
T  18889520 tatgaagcagagacactacttgggttaggtgtgtccgggtgtcggacatgcgtcggtgtccgaca 18889584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 22 - 89
Target Start/End: Original strand, 37411188 - 37411255
Alignment:
Q  22 gaagcacagacacttctcggattaggtgtgtccc-gtgtcggacacgcgtcggtgtccgacatcgacac 89  Q
    ||||||||| |||| |||||| |||| ||||||| |||||||||||||||| |||| ||||||||||||    
T  37411188 gaagcacaggcactcctcggactaggcgtgtcccagtgtcggacacgcgtc-gtgttcgacatcgacac 37411255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 65
Target Start/End: Original strand, 18840954 - 18841001
Alignment:
Q  19 tatgaagcacagacacttctcggattaggtgtgtccc-gtgtcggaca 65  Q
    |||||||||| |||||| ||||||||||||||||||| ||||||||||    
T  18840954 tatgaagcacggacactcctcggattaggtgtgtcccggtgtcggaca 18841001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 66
Target Start/End: Complemental strand, 25072801 - 25072754
Alignment:
Q  19 tatgaagcacagacacttctcggattaggtgtgtcccgtgtcggacac 66  Q
    ||||||||||||||||||| || |||||||||||||||| || |||||    
T  25072801 tatgaagcacagacacttcacgcattaggtgtgtcccgtatccgacac 25072754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 28596587 - 28596517
Alignment:
Q  19 tatgaagcacagacacttctcggattaggtgtgtcc-cgtgtcggacacgcgtcggtgtccgacatcgacac 89  Q
    |||||||||| |||||| ||||||||||| ||||||  |||||||||||| ||| |||||||||| ||||||    
T  28596587 tatgaagcacggacactcctcggattaggagtgtccgagtgtcggacacgtgtc-gtgtccgacaccgacac 28596517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 89
Target Start/End: Original strand, 2438661 - 2438730
Alignment:
Q  20 atgaagcacagacacttctcggattaggtgtgtccc-gtgtcggacacgcgtcggtgtccgacatcgacac 89  Q
    ||||||||| |||||| ||||||||||| ||||||| |||||||||| | ||| |||||||||| ||||||    
T  2438661 atgaagcacggacactcctcggattaggcgtgtcccggtgtcggacatgtgtc-gtgtccgacaccgacac 2438730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 53
Target Start/End: Original strand, 18420364 - 18420398
Alignment:
Q  19 tatgaagcacagacacttctcggattaggtgtgtc 53  Q
    ||||||||||||||||||||||||||||| |||||    
T  18420364 tatgaagcacagacacttctcggattaggcgtgtc 18420398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 84 - 150
Target Start/End: Complemental strand, 19574042 - 19573976
Alignment:
Q  84 cgacaccgacacgacacctatgattacactaaatttaatcattttcttaaattattatatgtgtcgg 150  Q
    ||||||||||||| ||||||| |||||||| ||||   | ||||||||||||||||||  |||||||    
T  19574042 cgacaccgacacgccacctataattacactgaattatgttattttcttaaattattatcggtgtcgg 19573976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 72
Target Start/End: Complemental strand, 26769640 - 26769586
Alignment:
Q  19 tatgaagcacagacacttctcggattaggtgtgtccc-gtgtcggacacgcgtcg 72  Q
    |||||||||| |||||| ||||||||||| ||||||| |||||||||||| ||||    
T  26769640 tatgaagcacggacactcctcggattaggcgtgtcccagtgtcggacacgtgtcg 26769586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 84 - 150
Target Start/End: Complemental strand, 37986843 - 37986777
Alignment:
Q  84 cgacaccgacacgacacctatgattacactaaatttaatcattttcttaaattattatatgtgtcgg 150  Q
    ||||||| |||||| ||||||||||||||| || |  |||||||| | |||||||||| ||||||||    
T  37986843 cgacaccaacacgatacctatgattacactcaaatatatcattttttcaaattattatctgtgtcgg 37986777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 103 - 148
Target Start/End: Complemental strand, 22085049 - 22085004
Alignment:
Q  103 atgattacactaaatttaatcattttcttaaattattatatgtgtc 148  Q
    ||||||||||||||||   ||||||||||||||||||||| |||||    
T  22085049 atgattacactaaattatgtcattttcttaaattattatacgtgtc 22085004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 141
Target Start/End: Complemental strand, 30563501 - 30563416
Alignment:
Q  56 gtgtcggacacgcgtcggtgtccgacatcgacaccgacacgacacctatgattacactaaatttaatcattttcttaaattattat 141  Q
    |||||||| |||| | |||||||||||  ||||||||||| ||||||||  ||||| | ||||   ||||||||| ||||||||||    
T  30563501 gtgtcggatacgcctgggtgtccgacactgacaccgacacaacacctatagttacattgaattatgtcattttctcaaattattat 30563416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 44860450 - 44860401
Alignment:
Q  18 ttatgaagcacagacacttctcggattaggtgtgtcccg-tgtcggacac 66  Q
    ||||||||||| |||||| |||| ||||||||||||||| ||||||||||    
T  44860450 ttatgaagcacggacactcctcgaattaggtgtgtcccgatgtcggacac 44860401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 114
Target Start/End: Original strand, 12601142 - 12601238
Alignment:
Q  19 tatgaagcacagacacttctcggattaggtgtgtc-ccgtgtcggacacgcgtcggtgtccgacatcgacaccgacacgacacctatgattacacta 114  Q
    ||||||| ||||||||| |||| ||||||||||||   |||| ||||||||||||||||  ||||  ||||| || ||| ||||||| |||| ||||    
T  12601142 tatgaagtacagacactcctcgaattaggtgtgtcttggtgttggacacgcgtcggtgtttgacactgacactgatacggcacctattattatacta 12601238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 15 - 82
Target Start/End: Complemental strand, 17651685 - 17651617
Alignment:
Q  15 atcttatgaagcacagacacttctcggattaggtgtgtc-ccgtgtcggacacgcgtcggtgtccgaca 82  Q
    |||||||||||||| ||||| | | |||||||| ||||| | ||||| |||||||||| ||||||||||    
T  17651685 atcttatgaagcacggacacctttaggattaggcgtgtcgcggtgtccgacacgcgtcagtgtccgaca 17651617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 82
Target Start/End: Complemental strand, 41849419 - 41849355
Alignment:
Q  19 tatgaagcacagacacttctcggattaggtgtgtcccg-tgtcggacacgcgtcggtgtccgaca 82  Q
    |||||||||| ||||| ||| | |||||| ||||| || |||| |||||||||||||||||||||    
T  41849419 tatgaagcacggacacctctagaattaggcgtgtcgcggtgtcagacacgcgtcggtgtccgaca 41849355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 76; Significance: 6e-35; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 19 - 162
Target Start/End: Original strand, 13009423 - 13009566
Alignment:
Q  19 tatgaagcacagacacttctcggattaggtgtgtcccgtgtcggacacgcgtcggtgtccgacatcgacaccgacacgacacctatgattacactaaatt 118  Q
    |||||||||| ||| || || |||||||| ||||||||||||||||| ||||||||||| |||| | ||||||||||||||| |||||||||||||||||    
T  13009423 tatgaagcacggacgctccttggattaggcgtgtcccgtgtcggacaggcgtcggtgtctgacacctacaccgacacgacacttatgattacactaaatt 13009522  T
Q  119 taatcattttcttaaattattatatgtgtcggtgtccgtgcttc 162  Q
      ||  |||||| ||||||||||  |||||||||||||||||||    
T  13009523 atattgttttctcaaattattatccgtgtcggtgtccgtgcttc 13009566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 19 - 142
Target Start/End: Complemental strand, 39820546 - 39820435
Alignment:
Q  19 tatgaagcacagacacttctcggattaggtgtgtcccgtgtcggacacgcgtcggtgtccgacatcgacaccgacacgacacctatgattacactaaatt 118  Q
    |||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||            ||||||||||||||||||||||||||||    
T  39820546 tatgaagcacggacacttctcggattaggcgtgtcccgtgtcggacacgcgtcggtgtcc------------gacacgacacctatgattacactaaatt 39820459  T
Q  119 taatcattttcttaaattattata 142  Q
      |||||||||| |||||||||||    
T  39820458 atatcattttctcaaattattata 39820435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 60 - 153
Target Start/End: Complemental strand, 13845322 - 13845229
Alignment:
Q  60 cggacacgcgtcggtgtccgacatcgacaccgacacgacacctatgattacactaaatttaatcattttcttaaattattatatgtgtcggtgt 153  Q
    |||||||||||| |||||||||| |||||| |||||||||||||||||||| |||||||  |||||||||| |||||||||| |||||||||||    
T  13845322 cggacacgcgtcagtgtccgacaccgacacagacacgacacctatgattactctaaattatatcattttctcaaattattatttgtgtcggtgt 13845229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 20 - 150
Target Start/End: Complemental strand, 44067644 - 44067514
Alignment:
Q  20 atgaagcacagacacttctcggattaggtgtgtcccg-tgtcggacacgcgtcggtgtccgacatcgacaccgacacgacacctatgattacactaaatt 118  Q
    ||||||||| |||||| |||| |||||| |||||| | |||||||||||| || |||||||||| ||||||||||||||||| ||| ||||||||  |||    
T  44067644 atgaagcacggacactcctcgaattaggcgtgtcctggtgtcggacacgcatcagtgtccgaca-cgacaccgacacgacacttataattacactgtatt 44067546  T
Q  119 taatcattttcttaaattattatatgtgtcgg 150  Q
       ||||||||| ||||||||||  |||||||    
T  44067545 atgtcattttctcaaattattatccgtgtcgg 44067514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 19 - 158
Target Start/End: Complemental strand, 40064080 - 40063941
Alignment:
Q  19 tatgaagcacagacacttctcggattaggtgtgtcccg-tgtcggacacgcgtcggtgtccgacatcgacaccgacacgacacctatgattacactaaat 117  Q
    |||| ||||| |||||| |||||||||| ||||||||| |||||||||| |||||| | | |   | |||||||||||||| |||||||||||| | |||    
T  40064080 tatgtagcacggacactcctcggattagatgtgtcccggtgtcggacacacgtcggcgac-gtgttggacaccgacacgacgcctatgattacaatgaat 40063982  T
Q  118 ttaatcattttcttaaattattatatgtgtcggtgtccgtg 158  Q
    |   ||||||||| ||||||||||  |||||||||||||||    
T  40063981 tatgtcattttctcaaattattattggtgtcggtgtccgtg 40063941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 19 - 89
Target Start/End: Original strand, 29510234 - 29510304
Alignment:
Q  19 tatgaagcacagacacttctcggattaggtgtgtccc-gtgtcggacacgcgtcggtgtccgacatcgacac 89  Q
    |||||||||| |||||| ||||||||||||||||||| |||||||||||||||| |||||||||| ||||||    
T  29510234 tatgaagcacggacactcctcggattaggtgtgtcccggtgtcggacacgcgtc-gtgtccgacaccgacac 29510304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 38487158 - 38487220
Alignment:
Q  19 tatgaagcacagacacttctcggattaggtgtgtcc-cgtgtcggacacgcgtcggtgtccga 80  Q
    ||||||||||||||||| ||||||||| ||||||||  |||||||||||||||||||||||||    
T  38487158 tatgaagcacagacactcctcggattatgtgtgtccgggtgtcggacacgcgtcggtgtccga 38487220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 19 - 90
Target Start/End: Original strand, 14513109 - 14513181
Alignment:
Q  19 tatgaagcacagacacttctcggattaggtgtgtcccg-tgtcggacacgcgtcggtgtccgacatcgacacc 90  Q
    |||||| |||||||| |||| ||||||||||||| ||| ||||||||| ||||||||||| |||| |||||||    
T  14513109 tatgaatcacagacaattcttggattaggtgtgttccggtgtcggacatgcgtcggtgtctgacaccgacacc 14513181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 19 - 82
Target Start/End: Original strand, 36450695 - 36450758
Alignment:
Q  19 tatgaagcacagacacttctcggattaggtgtgtcc-cgtgtcggacacgcgtcggtgtccgaca 82  Q
    ||||||||||||||||| ||||||||||| ||||||  |||||||||||||||| ||||||||||    
T  36450695 tatgaagcacagacactcctcggattaggcgtgtcctggtgtcggacacgcgtc-gtgtccgaca 36450758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 17 - 158
Target Start/End: Complemental strand, 2035868 - 2035729
Alignment:
Q  17 cttatgaagcacagacacttctcggattaggtgtgtcccg-tgtcggacacgcgtcggtgtccgacatcgacaccgacacgacacctatgattacactaa 115  Q
    |||||||||||| ||| || |||||||||||||| ||||| |||||||||||||||||| |  |||| || ||| || ||||||||||| |||||||| |    
T  2035868 cttatgaagcacggacgctactcggattaggtgtctcccggtgtcggacacgcgtcggtct--gacaccggcac-gatacgacacctataattacactga 2035772  T
Q  116 atttaatcattttcttaaattattatatgtgtcggtgtccgtg 158  Q
    ||    | |||||| |||||| ||||  |||||||||| ||||    
T  2035771 ataatgttattttcctaaattgttatcggtgtcggtgttcgtg 2035729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 22 - 80
Target Start/End: Original strand, 12559044 - 12559103
Alignment:
Q  22 gaagcacagacacttctcggattaggtgtgtcccg-tgtcggacacgcgtcggtgtccga 80  Q
    |||||||||||||| || ||||||| ||||||||| ||||||||||| ||||||||||||    
T  12559044 gaagcacagacactcctgggattagatgtgtcccgttgtcggacacgtgtcggtgtccga 12559103  T

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Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 30067969 - 30068032
Alignment:
Q  19 tatgaagcacagacacttctcggattaggtgtgtccc-gtgtcggacacgcgtcggtgtccgac 81  Q
    |||||||||| ||||||  |||||||||||||||||| ||||||||||| ||||||| ||||||    
T  30067969 tatgaagcacggacactcatcggattaggtgtgtcccagtgtcggacacacgtcggtatccgac 30068032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 19 - 118
Target Start/End: Original strand, 15816059 - 15816158
Alignment:
Q  19 tatgaagcacagacacttctcggattaggtgtgtccc-gtgtcggacacgcgtcggtgtccgacatcgacaccgaca-cgacacctatgattacactaaa 116  Q
    |||||||||| |||||||||||||||||| ||||||| ||||||||  || ||| |||||||||| | ||| ||||| |||||| ||| |||||||||||    
T  15816059 tatgaagcacggacacttctcggattaggcgtgtcccggtgtcggattcgtgtc-gtgtccgacaccaaca-cgacaccgacacttataattacactaaa 15816156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 19 - 56
Target Start/End: Original strand, 16641910 - 16641947
Alignment:
Q  19 tatgaagcacagacacttctcggattaggtgtgtcccg 56  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  16641910 tatgaagcacagacactcctcggattaggtgtgtcccg 16641947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 19 - 95
Target Start/End: Original strand, 33389296 - 33389372
Alignment:
Q  19 tatgaagcacagacacttctcggattaggtgtgtccc-gtgtcggacacgcgtcggtgtccgacatcgacaccgacac 95  Q
    |||||||||| ||||||||| ||||||||||| |||| ||||||||||||  ||||||| ||||| ||||||| ||||    
T  33389296 tatgaagcaccgacacttcttggattaggtgtatcccagtgtcggacacgtatcggtgttcgaca-cgacaccaacac 33389372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 118
Target Start/End: Complemental strand, 3911240 - 3911140
Alignment:
Q  19 tatgaagcacagacacttctcggattaggtgtgtccc-gtgtcggacacgcgtcggtgtccgacatcgacaccgacacgacacctatgattacactaaat 117  Q
    ||||||||||| |||||| |  ||||||| |||||   || ||||||| |||||||||||||| | ||||||| ||||||||| ||||||| |||| |||    
T  3911240 tatgaagcacatacactttttagattaggagtgtctgagtatcggacatgcgtcggtgtccgataccgacaccaacacgacacttatgatttcactgaat 3911141  T
Q  118 t 118  Q
    |    
T  3911140 t 3911140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 89 - 141
Target Start/End: Original strand, 35431140 - 35431192
Alignment:
Q  89 ccgacacgacacctatgattacactaaatttaatcattttcttaaattattat 141  Q
    |||||||||||||||||||||||||||| |   ||||||||| ||||||||||    
T  35431140 ccgacacgacacctatgattacactaaaatatgtcattttctcaaattattat 35431192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 72
Target Start/End: Complemental strand, 8343445 - 8343391
Alignment:
Q  19 tatgaagcacagacacttctcggattaggtgtgtccc-gtgtcggacacgcgtcg 72  Q
    |||||||||||||||||  |||||||||| ||||||| |||||||||||| ||||    
T  8343445 tatgaagcacagacactcttcggattaggcgtgtcccggtgtcggacacgtgtcg 8343391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 73 - 139
Target Start/End: Original strand, 16869699 - 16869765
Alignment:
Q  73 gtgtccgacatcgacaccgacacgacacctatgattacactaaatttaatcattttcttaaattatt 139  Q
    |||||||||| ||||||| |||||||||| ||||||| | | ||||   ||||||||||||||||||    
T  16869699 gtgtccgacaccgacaccaacacgacaccaatgattatagtgaattatgtcattttcttaaattatt 16869765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 56
Target Start/End: Complemental strand, 25566948 - 25566911
Alignment:
Q  19 tatgaagcacagacacttctcggattaggtgtgtcccg 56  Q
    ||||||||||||||||| ||||||||||| ||||||||    
T  25566948 tatgaagcacagacactcctcggattaggcgtgtcccg 25566911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 89 - 141
Target Start/End: Complemental strand, 1676771 - 1676719
Alignment:
Q  89 ccgacacgacacctatgattacactaaatttaatcattttcttaaattattat 141  Q
    |||||||||||||||||||||||||||| |   ||||||||  ||||||||||    
T  1676771 ccgacacgacacctatgattacactaaaatatgtcattttcacaaattattat 1676719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 66
Target Start/End: Complemental strand, 8343085 - 8343037
Alignment:
Q  19 tatgaagcacagacacttctcggattaggtgtgtccc-gtgtcggacac 66  Q
    |||||||||||||||||  |||||||||| ||||||| |||||||||||    
T  8343085 tatgaagcacagacactcttcggattaggcgtgtcccggtgtcggacac 8343037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 82
Target Start/End: Original strand, 24413500 - 24413563
Alignment:
Q  19 tatgaagcacagacacttctcggattaggtgtgtcccg-tgtcggacacgcgtcggtgtccgaca 82  Q
    |||||||||| |||||||||||||||||  |||||||| ||| |||||||| || ||||||||||    
T  24413500 tatgaagcacggacacttctcggattagacgtgtcccgctgttggacacgcatc-gtgtccgaca 24413563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 69; Significance: 9e-31; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 19 - 154
Target Start/End: Original strand, 3144588 - 3144717
Alignment:
Q  19 tatgaagcacagacacttctcggattaggtgtgtcccgtgtcggacacgcgtcggtgtccgacatcgacaccgacacgacacctatgattacactaaatt 118  Q
    |||||||||| |||||||||||||||||||||||| ||||| |||||||||| ||||||       ||||||||||||||||||||||||||||||||||    
T  3144588 tatgaagcacggacacttctcggattaggtgtgtctcgtgttggacacgcgttggtgtc------tgacaccgacacgacacctatgattacactaaatt 3144681  T
Q  119 taatcattttcttaaattattatatgtgtcggtgtc 154  Q
      |||||||||| ||||||||||  |||| ||||||    
T  3144682 atatcattttctgaaattattatccgtgtaggtgtc 3144717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 22 - 150
Target Start/End: Original strand, 20743210 - 20743339
Alignment:
Q  22 gaagcacagacacttctcggattaggtgtgtcccg-tgtcggacacgcgtcggtgtccgacatcgacaccgacacgacacctatgattacactaaattta 120  Q
    ||||||| ||||||  ||||||||| ||||| ||| ||||||||||| ||||||||| ||||||||||||||||| ||||||||||||||||| ||||      
T  20743210 gaagcacggacactcatcggattagatgtgttccggtgtcggacacgtgtcggtgtctgacatcgacaccgacacaacacctatgattacactgaattat 20743309  T
Q  121 atcattttcttaaattattatatgtgtcgg 150  Q
     ||||||||| ||||||||||  |||||||    
T  20743310 gtcattttctcaaattattatccgtgtcgg 20743339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 19 - 137
Target Start/End: Complemental strand, 17876284 - 17876166
Alignment:
Q  19 tatgaagcacagacacttctcggattaggtgtgtcc-cgtgtcggacacgcgtcggtgtccgacatcgacaccgacacgacacctatgattacactaaat 117  Q
    ||||||||||||||||| || |||||||||||||||  |||||||||| ||||||||||| |||| |||||| |||||| ||| ||||||||||||||||    
T  17876284 tatgaagcacagacactccttggattaggtgtgtcctggtgtcggacaagcgtcggtgtctgaca-cgacactgacacggcacatatgattacactaaat 17876186  T
Q  118 ttaatcattttcttaaatta 137  Q
    |   ||||||||| ||||||    
T  17876185 tatgtcattttctaaaatta 17876166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 19 - 149
Target Start/End: Original strand, 31243477 - 31243608
Alignment:
Q  19 tatgaagcacagacacttctcggattaggtgtgtcccg-tgtcggacacgcgtcggtgtccgacatcgacaccgacacgacacctatgattacactaaat 117  Q
    |||||| |||| ||||| |||  ||||||||||||| | ||||| |||||| ||||||||||||| | ||||||||| |||||||||||||||||| |||    
T  31243477 tatgaaccacaaacactcctcatattaggtgtgtcctggtgtcgaacacgcatcggtgtccgacaccaacaccgacatgacacctatgattacactgaat 31243576  T
Q  118 ttaatcattttcttaaattattatatgtgtcg 149  Q
    |   ||||||||| ||||||||||| ||||||    
T  31243577 tatgtcattttctcaaattattataagtgtcg 31243608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 30 - 148
Target Start/End: Complemental strand, 6274062 - 6273944
Alignment:
Q  30 gacacttctcggattaggtgtgtcccgtgtcggacacgcgtcggtgtccgacatcgacaccgacacgacacctatgattacactaaatttaatcattttc 129  Q
    ||||||||||  |||||| |||||  |||||||||| |||||| |||| |||| |||||||||||||||  |||| |||||||||||||  |||||||||    
T  6274062 gacacttctcatattaggcgtgtcttgtgtcggacatgcgtcgatgtctgacaccgacaccgacacgacgactataattacactaaattatatcattttc 6273963  T
Q  130 ttaaattattatatgtgtc 148  Q
    | |||||||| | ||||||    
T  6273962 tcaaattattgtctgtgtc 6273944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 19 - 150
Target Start/End: Original strand, 53381531 - 53381653
Alignment:
Q  19 tatgaagcacagacacttctcggattaggtgtgtccc-gtgtcggacacgcgtcggtgtccgacatcgacaccgacacgacacctatgattacactaaat 117  Q
    |||||||||| |||||| ||||||||||||||||||| |||||||| ||||||| |||||      ||||||||||||||| ||||| |||||||| |||    
T  53381531 tatgaagcacggacactcctcggattaggtgtgtcccggtgtcggatacgcgtcagtgtc------cgacaccgacacgacgcctataattacactgaat 53381624  T
Q  118 ttaatcattttcttaaattattatatgtgtcgg 150  Q
        ||||||||||||||||||||  |||||||    
T  53381625 ----tcattttcttaaattattatcggtgtcgg 53381653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 19 - 118
Target Start/End: Original strand, 944603 - 944697
Alignment:
Q  19 tatgaagcacagacacttctcggattaggtgtgtccc-gtgtcggacacgcgtcggtgtccgacatcgacaccgacacgacacctatgattacactaaat 117  Q
    |||||||| |||| ||| ||| ||||||||||||||| |||||||||||||||| ||||      ||||||| |||||||||||||| ||||||||||||    
T  944603 tatgaagctcagagactcctcagattaggtgtgtcccggtgtcggacacgcgtctgtgt------tcgacactgacacgacacctataattacactaaat 944696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 19 - 150
Target Start/End: Complemental strand, 7012196 - 7012064
Alignment:
Q  19 tatgaagcacagacacttctcggattaggtgtgtcccg-tgtcggacacgcgtcggtgtccgacatcgacaccgaca-cgacacctatgattacactaaa 116  Q
    |||||||||| |||||| |||| |||||||||  |||| ||||||| |||||||||||||||||| ||||| | ||| ||| ||||||||| ||||| ||    
T  7012196 tatgaagcacggacactcctcgcattaggtgttccccggtgtcggatacgcgtcggtgtccgacaccgaca-caacaccgatacctatgatcacactgaa 7012098  T
Q  117 tttaatcattttcttaaattattatatgtgtcgg 150  Q
    ||   ||||||||| ||||||||||  |||||||    
T  7012097 ttatgtcattttctcaaattattatcggtgtcgg 7012064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 19 - 150
Target Start/End: Complemental strand, 24343631 - 24343505
Alignment:
Q  19 tatgaagcacagacacttctcggattaggtgtgtcccg-tgtcggacacgcgtcggtgtccgacatcgacaccgacacgacacctatgattacactaaat 117  Q
    |||||||||| |||||| ||| || |||| |||||||| |||||||||||||||||||||       |||||||||||||||||||| |||||||| |||    
T  24343631 tatgaagcacggacactcctcagaataggcgtgtcccggtgtcggacacgcgtcggtgtc------ggacaccgacacgacacctataattacactgaat 24343538  T
Q  118 ttaatcattttcttaaattattatatgtgtcgg 150  Q
    |   | ||||||| ||||||||||  |||||||    
T  24343537 tatgtaattttctcaaattattatccgtgtcgg 24343505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 13 - 95
Target Start/End: Original strand, 3947696 - 3947777
Alignment:
Q  13 atatcttatgaagcacagacacttctcggattaggtgtgtcc-cgtgtcggacacgcgtcggtgtccgacatcgacaccgacac 95  Q
    |||| ||||||||||| |||||| ||||||||||||||||||  |||||||||||| ||| |||||||||| |||||| |||||    
T  3947696 atatattatgaagcacggacactcctcggattaggtgtgtcctggtgtcggacacgtgtc-gtgtccgaca-cgacactgacac 3947777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 19 - 89
Target Start/End: Original strand, 23292927 - 23292997
Alignment:
Q  19 tatgaagcacagacacttctcggattaggtgtgtccc-gtgtcggacacgcgtcggtgtccgacatcgacac 89  Q
    |||||||||| |||||| ||||||||||| ||||||| |||||||||||| ||| |||||||||| ||||||    
T  23292927 tatgaagcacggacactcctcggattaggcgtgtcccggtgtcggacacgtgtc-gtgtccgacaccgacac 23292997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 30 - 151
Target Start/End: Complemental strand, 32910670 - 32910548
Alignment:
Q  30 gacacttctcggattaggtgtgtcccg-tgtcggacacgcgtcggtgtccgacatcgacaccgacacgacacctatgattacactaaatttaatcatttt 128  Q
    |||||| ||||||||||| |||||  | ||||||||||||||| |||||| | | ||| |||||||  ||||| || |||||||| ||||   |||||||    
T  32910670 gacactcctcggattaggcgtgtcatggtgtcggacacgcgtcagtgtccaataccgataccgacataacacccataattacactgaattatgtcatttt 32910571  T
Q  129 cttaaattattatatgtgtcggt 151  Q
    || ||||||||||  ||||||||    
T  32910570 ctcaaattattatccgtgtcggt 32910548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 82
Target Start/End: Original strand, 18513176 - 18513240
Alignment:
Q  19 tatgaagcacagacacttctcggattaggtgtgtcccg-tgtcggacacgcgtcggtgtccgaca 82  Q
    |||||||||| |||||| ||| ||||||| |||||| | |||||||||| |||||||||||||||    
T  18513176 tatgaagcacggacactcctcagattaggcgtgtcctggtgtcggacacacgtcggtgtccgaca 18513240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 84 - 128
Target Start/End: Complemental strand, 23386210 - 23386166
Alignment:
Q  84 cgacaccgacacgacacctatgattacactaaatttaatcatttt 128  Q
    ||||||||||| |||||||||||||||||||||||  ||||||||    
T  23386210 cgacaccgacatgacacctatgattacactaaattatatcatttt 23386166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 35161154 - 35161092
Alignment:
Q  19 tatgaagcacagacacttctcggattaggtgtg-tcccgtgtcggacacgcgtcggtgtccgac 81  Q
    |||||||||| ||||||| |||||||||||||| ||| |||||||||||| ||| |||||||||    
T  35161154 tatgaagcacggacacttttcggattaggtgtgttccggtgtcggacacgtgtc-gtgtccgac 35161092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 72
Target Start/End: Complemental strand, 19482797 - 19482743
Alignment:
Q  19 tatgaagcacagacacttctcggattaggtgtgtccc-gtgtcggacacgcgtcg 72  Q
    ||||||||||  ||||| ||||||||||||||||||| |||||||||||| ||||    
T  19482797 tatgaagcacgaacactcctcggattaggtgtgtcccagtgtcggacacgtgtcg 19482743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 14 - 56
Target Start/End: Complemental strand, 40784076 - 40784034
Alignment:
Q  14 tatcttatgaagcacagacacttctcggattaggtgtgtcccg 56  Q
    |||| |||||||||| |||||| ||||||||||||||||||||    
T  40784076 tatcctatgaagcacggacactcctcggattaggtgtgtcccg 40784034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 41 - 96
Target Start/End: Complemental strand, 10133805 - 10133749
Alignment:
Q  41 gattaggtgtgtcccg-tgtcggacacgcgtcggtgtccgacatcgacaccgacacg 96  Q
    |||||||||||||| | ||||||||||||||| ||||| |||| ||||||| |||||    
T  10133805 gattaggtgtgtcctggtgtcggacacgcgtcagtgtctgacaccgacaccaacacg 10133749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 97 - 141
Target Start/End: Original strand, 39507127 - 39507171
Alignment:
Q  97 acacctatgattacactaaatttaatcattttcttaaattattat 141  Q
    ||||||||||||||||| ||||  ||||||||| |||||||||||    
T  39507127 acacctatgattacacttaattatatcattttcataaattattat 39507171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 99 - 139
Target Start/End: Original strand, 49659533 - 49659573
Alignment:
Q  99 acctatgattacactaaatttaatcattttcttaaattatt 139  Q
    ||||||||||||||||||||  |||||||||| ||||||||    
T  49659533 acctatgattacactaaattatatcattttctcaaattatt 49659573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 68; Significance: 3e-30; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 19 - 158
Target Start/End: Original strand, 29812599 - 29812733
Alignment:
Q  19 tatgaagcacagacacttctcggattaggtgtgtcccgtgtcggacacgcgtcggtgtccgacatcgacaccgacacgacacctatgattacactaaatt 118  Q
    |||||||||| |||||||||||||||||| ||||||||||||||      ||| |   |||||| |||||||||||||||||||||||||||||||||||    
T  29812599 tatgaagcacggacacttctcggattaggcgtgtcccgtgtcggt-----gtccgacaccgacaccgacaccgacacgacacctatgattacactaaatt 29812693  T
Q  119 taatcattttcttaaattattatatgtgtcggtgtccgtg 158  Q
      |||||||||| ||||||||||| | |||||||||||||    
T  29812694 atatcattttctcaaattattatacgggtcggtgtccgtg 29812733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 19 - 141
Target Start/End: Complemental strand, 23752017 - 23751907
Alignment:
Q  19 tatgaagcacagacacttctcggattaggtgtgtcccgtgtcggacacgcgtcggtgtccgacatcgacaccgacacgacacctatgattacactaaatt 118  Q
    |||||||||||||||||| |||||||||| |||||||||||| |||||||||||||||||            ||||||||||||||||||||||||||||    
T  23752017 tatgaagcacagacacttatcggattaggcgtgtcccgtgtctgacacgcgtcggtgtcc------------gacacgacacctatgattacactaaatt 23751930  T
Q  119 taatcattttcttaaattattat 141  Q
      |||||||| | ||||||||||    
T  23751929 atatcattttatcaaattattat 23751907  T

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Target: chr7; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 19 - 153
Target Start/End: Original strand, 7133213 - 7133342
Alignment:
Q  19 tatgaagcacagacacttctcggattaggtgtgtccc-gtgtcggacacgcgtcggtgtccgacatcgacaccgacacgacacctatgattacactaaat 117  Q
    |||||||||| ||| || ||| ||||||||||||||| ||||||||||||||||||||||      ||||||||||||  |||||||||||||||| |||    
T  7133213 tatgaagcacggacgctcctcagattaggtgtgtcccagtgtcggacacgcgtcggtgtc------cgacaccgacacaccacctatgattacactgaat 7133306  T
Q  118 ttaatcattttcttaaattattatatgtgtcggtgt 153  Q
    |   ||||||||| ||||||| || |||||||||||    
T  7133307 tatgtcattttctcaaattatcatctgtgtcggtgt 7133342  T

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Target: chr7; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 23 - 150
Target Start/End: Complemental strand, 43250118 - 43249991
Alignment:
Q  23 aagcacagacacttctcggattaggtgtgtcccg-tgtcggacacgcgtcggtgtccgacatcgacaccgacacgacacctatgattacactaaatttaa 121  Q
    |||||| |||||| |||| |||||| |||||| | ||||||||||||||| |||||||||  ||||||||||||||||| ||| ||||||||  |||       
T  43250118 aagcacggacactcctcgaattaggcgtgtcctggtgtcggacacgcgtcagtgtccgacg-cgacaccgacacgacacttataattacactgtattatg 43250020  T
Q  122 tcattttcttaaattattatatgtgtcgg 150  Q
    ||||||||| ||||||||||  |||||||    
T  43250019 tcattttctcaaattattatccgtgtcgg 43249991  T

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Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 19 - 150
Target Start/End: Original strand, 4017730 - 4017855
Alignment:
Q  19 tatgaagcacagacacttctcggattaggtgtgtcccgtgtcggacacgcgtcggtgtccgacatcgacaccgacacgacacctatgattacactaaatt 118  Q
    ||||||||||  |||||| |  ||||||| |||| ||||||| ||||| |||||||||||||||      || ||||||||| |||||||||||||||||    
T  4017730 tatgaagcacgaacactttttagattaggcgtgttccgtgtcagacacacgtcggtgtccgaca------ccaacacgacacttatgattacactaaatt 4017823  T
Q  119 taatcattttcttaaattattatatgtgtcgg 150  Q
      ||| |||||| ||||||||||  |||||||    
T  4017824 atatcgttttctcaaattattatccgtgtcgg 4017855  T

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Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 19 - 95
Target Start/End: Original strand, 5409772 - 5409847
Alignment:
Q  19 tatgaagcacagacacttctcggattaggtgtgtccc-gtgtcggacacgcgtcggtgtccgacatcgacaccgacac 95  Q
    |||||||||| |||||| ||||||||||| ||||||| |||||||||||| ||| |||||||||| ||||||||||||    
T  5409772 tatgaagcacggacactcctcggattaggcgtgtcccggtgtcggacacgtgtc-gtgtccgaca-cgacaccgacac 5409847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 19 - 150
Target Start/End: Original strand, 38804490 - 38804616
Alignment:
Q  19 tatgaagcacagacacttctcggattaggtgtgtccc-gtgtcggacacgcgtcggtgtccgacatcgacaccgacacgacacctatgattacactaaat 117  Q
    ||||||||||| ||||| |||||||||||  |||||| | ||||||||| ||||||||||      ||||||| ||||||||||||||||||| ||  ||    
T  38804490 tatgaagcacatacactcctcggattaggcatgtcccggcgtcggacacacgtcggtgtc------cgacaccaacacgacacctatgattaccctggat 38804583  T
Q  118 ttaatcattttcttaaattattatatgtgtcgg 150  Q
    |   ||||||||| ||||||||||  |||||||    
T  38804584 tatgtcattttctgaaattattatccgtgtcgg 38804616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 598326 - 598256
Alignment:
Q  19 tatgaagcacagacacttctcggattaggtgtgtccc-gtgtcggacacgcgtcggtgtccgacatcgacac 89  Q
    |||||||||| |||||||||||||||||| ||||||| |||||||||||| ||| ||||| |||| ||||||    
T  598326 tatgaagcacggacacttctcggattaggcgtgtcccggtgtcggacacgtgtc-gtgtctgacaccgacac 598256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 66
Target Start/End: Original strand, 32287404 - 32287452
Alignment:
Q  19 tatgaagcacagacacttctcggattaggtgtgtccc-gtgtcggacac 66  Q
    |||||||||| |||||| ||||||||||||||||||| |||||||||||    
T  32287404 tatgaagcacggacactcctcggattaggtgtgtcccggtgtcggacac 32287452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 21864926 - 21864856
Alignment:
Q  19 tatgaagcacagacacttctcggattaggtgtgtccc-gtgtcggacacgcgtcggtgtccgacatcgacac 89  Q
    ||||||||||||||||| |||| |||||  ||||||| |||||||||||| ||| |||||||||| ||||||    
T  21864926 tatgaagcacagacactcctcgaattagacgtgtcccggtgtcggacacgtgtc-gtgtccgacagcgacac 21864856  T

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Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 21880270 - 21880200
Alignment:
Q  19 tatgaagcacagacacttctcggattaggtgtgtcc-cgtgtcggacacgcgtcggtgtccgacatcgacac 89  Q
    |||||||||| |||||||||||||||||| ||||||  |||||||||| | ||| |||||||||| ||||||    
T  21880270 tatgaagcacggacacttctcggattaggcgtgtcctggtgtcggacatgtgtc-gtgtccgacaccgacac 21880200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 83 - 141
Target Start/End: Original strand, 17780078 - 17780136
Alignment:
Q  83 tcgacaccgacacgacacctatgattacactaaatttaatcattttcttaaattattat 141  Q
    |||||||||||||||||||||| ||||||   ||||   ||||||||||||||||||||    
T  17780078 tcgacaccgacacgacacctattattacatagaattatgtcattttcttaaattattat 17780136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 94
Target Start/End: Original strand, 32093955 - 32094030
Alignment:
Q  19 tatgaagcacagacacttctcggattaggtgtgtccc--gtgtcggacacgcgtcggtgtccgacatcgacaccgaca 94  Q
    ||||||||||  ||||| ||||||||||| |||||||  |||||||||||| ||| |||||||||| |||||||||||    
T  32093955 tatgaagcacgaacactcctcggattaggcgtgtccccggtgtcggacacgtgtc-gtgtccgaca-cgacaccgaca 32094030  T

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Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 82
Target Start/End: Complemental strand, 12278942 - 12278889
Alignment:
Q  30 gacacttctcggattaggtgtgtcccg-tgtcggacacgcgtcggtgtccgaca 82  Q
    |||||| || ||||||||||||||||| |||| ||||||||| |||||||||||    
T  12278942 gacactcctaggattaggtgtgtcccggtgtcagacacgcgttggtgtccgaca 12278889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 154
Target Start/End: Original strand, 22683720 - 22683820
Alignment:
Q  56 gtgtcggacacgcgtcggtgtccgacatcgacaccgacac--gacacctatgattacactaaatttaatcattttcttaaattattatatgtgtcggtgt 153  Q
    ||||| ||||| ||||| |||||||||  ||||| |||||  ||||||||||||| |||| ||||  ||||| |||| ||||||||||  || |||||||    
T  22683720 gtgtcagacacccgtcgatgtccgacactgacactgacacacgacacctatgattgcactgaattatatcatattctcaaattattatccgtctcggtgt 22683819  T
Q  154 c 154  Q
    |    
T  22683820 c 22683820  T

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Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 84 - 137
Target Start/End: Complemental strand, 23930283 - 23930230
Alignment:
Q  84 cgacaccgacacgacacctatgattacactaaatttaatcattttcttaaatta 137  Q
    |||||||||||| ||||||||||||||||| ||||   ||||||||| ||||||    
T  23930283 cgacaccgacacaacacctatgattacactgaattatgtcattttctcaaatta 23930230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 67
Target Start/End: Original strand, 40131940 - 40131989
Alignment:
Q  19 tatgaagcacagacacttctcggattaggtgtgtccc-gtgtcggacacg 67  Q
    ||||||||||||||||| ||||||||||  ||||||| ||||||||||||    
T  40131940 tatgaagcacagacactcctcggattagacgtgtccctgtgtcggacacg 40131989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 87
Target Start/End: Original strand, 41229238 - 41229307
Alignment:
Q  19 tatgaagcacagacacttctcggattaggtgtgtccc-gtgtcggacacgcgtcggtgtccgacatcgac 87  Q
    |||||||||| ||||||||||  |||||| ||||| | ||| ||||||||||| ||||||||||| ||||    
T  41229238 tatgaagcacggacacttctcatattaggcgtgtcgcagtgacggacacgcgttggtgtccgacaccgac 41229307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 55
Target Start/End: Complemental strand, 49107924 - 49107887
Alignment:
Q  18 ttatgaagcacagacacttctcggattaggtgtgtccc 55  Q
    |||||||||||||||||| |||||||||||| ||||||    
T  49107924 ttatgaagcacagacactcctcggattaggtatgtccc 49107887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 89 - 141
Target Start/End: Complemental strand, 12278894 - 12278842
Alignment:
Q  89 ccgacacgacacctatgattacactaaatttaatcattttcttaaattattat 141  Q
    |||||||||||| ||| |||||||| ||||   ||||||||||||||||||||    
T  12278894 ccgacacgacacatataattacactgaattatgtcattttcttaaattattat 12278842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 97 - 141
Target Start/End: Complemental strand, 32855405 - 32855361
Alignment:
Q  97 acacctatgattacactaaatttaatcattttcttaaattattat 141  Q
    |||| |||||||||| | |||| ||||||||||||||||||||||    
T  32855405 acacatatgattacattcaattaaatcattttcttaaattattat 32855361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 64; Significance: 9e-28; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 19 - 141
Target Start/End: Complemental strand, 52369905 - 52369782
Alignment:
Q  19 tatgaagcacagacacttctcggattaggtgtgtcccg-tgtcggacacgcgtcggtgtccgacatcgacaccgacacgacacctatgattacactaaat 117  Q
    |||||||||| |||||| |||||| ||||||||||||| ||| |||||||||||||||||||| | |||||||||||||||||||||||||||| | |||    
T  52369905 tatgaagcacggacactcctcggaataggtgtgtcccggtgttggacacgcgtcggtgtccgataccgacaccgacacgacacctatgattacattgaat 52369806  T
Q  118 ttaatcattttcttaaattattat 141  Q
    |   | ||||||| ||||||||||    
T  52369805 tatgtaattttctcaaattattat 52369782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 19 - 167
Target Start/End: Complemental strand, 25074913 - 25074768
Alignment:
Q  19 tatgaagcacagacacttctcggattaggtgtgtccc-gtgtcggacacgcgtcggtgtccgacatcgacaccgacacgacacctatgattacactaaat 117  Q
    ||||||||||  ||||| ||||||||||||||||||| ||||||||||||||| ||||||       ||||||||||| || |||||||||||||| |||    
T  25074913 tatgaagcacgaacactcctcggattaggtgtgtcccagtgtcggacacgcgttggtgtc------agacaccgacacaacgcctatgattacactcaat 25074820  T
Q  118 ttaatcattttcttaaattattatatgtgtcg--gtgtccgtgcttcatagg 167  Q
    |   ||||||||| ||||||||||  ||||||  ||||||||||||||||||    
T  25074819 tatgtcattttctcaaattattatcggtgtcggcgtgtccgtgcttcatagg 25074768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 23 - 150
Target Start/End: Original strand, 14223793 - 14223914
Alignment:
Q  23 aagcacagacacttctcggattaggtgtgtcccgtgtcggacacgcgtcggtgtccgacatcgacaccgacacgacacctatgattacactaaatttaat 122  Q
    ||||||||| ||| ||| ||||||| ||||||| ||||||||||| ||||||||| ||||      |||||||||||| ||||| |||||||||||  ||    
T  14223793 aagcacagaaactcctcagattaggcgtgtcccatgtcggacacgtgtcggtgtcggaca------ccgacacgacacttatgaatacactaaattatat 14223886  T
Q  123 cattttcttaaattattatatgtgtcgg 150  Q
    | |||||| |||||||||| ||||||||    
T  14223887 cgttttctcaaattattatctgtgtcgg 14223914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 84 - 150
Target Start/End: Complemental strand, 25892524 - 25892458
Alignment:
Q  84 cgacaccgacacgacacctatgattacactaaatttaatcattttcttaaattattatatgtgtcgg 150  Q
    |||||| ||||||||||||||||||||||| ||||  ||||||||||||||||||||| ||| ||||    
T  25892524 cgacactgacacgacacctatgattacactgaattatatcattttcttaaattattatttgtttcgg 25892458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 19 - 147
Target Start/End: Complemental strand, 27903756 - 27903633
Alignment:
Q  19 tatgaagcacagacacttctcggattaggtgtg-tcccgtgtcggacacgcgtcggtgtccgacatcgacaccgacacgacacctatgattacactaaat 117  Q
    |||||||||| ||||||||||||||||||  || ||| ||||| ||||||||||||| ||      |||||||||||| |||| |||||||||| |||||    
T  27903756 tatgaagcacggacacttctcggattaggcatgatccagtgtcagacacgcgtcggtatc------cgacaccgacacaacacttatgattacattaaat 27903663  T
Q  118 ttaatcattttcttaaattattatatgtgt 147  Q
    |  ||| |||||| |||||||||| |||||    
T  27903662 tatatcgttttctcaaattattatctgtgt 27903633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 19 - 150
Target Start/End: Complemental strand, 8903553 - 8903430
Alignment:
Q  19 tatgaagcacagacacttctcggattaggtgtgtcccgtgtcggacacgcgtcggtgtccgacatcgacaccgacacgacacctatgattacactaaatt 118  Q
    ||||||||||  ||||| |||||||||||||||||||| ||||||||||| | |||||||| |||      ||||||||||||||| ||||||||||||     
T  8903553 tatgaagcacgaacactcctcggattaggtgtgtcccg-gtcggacacgcataggtgtccggcat------cgacacgacacctataattacactaaata 8903461  T
Q  119 taatcattttcttaaattattatatgtgtcgg 150  Q
    |  ||||||||| ||| ||||||  |||||||    
T  8903460 t-gtcattttctcaaaatattatccgtgtcgg 8903430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 19 - 77
Target Start/End: Complemental strand, 21211412 - 21211353
Alignment:
Q  19 tatgaagcacagacacttctcggattaggtgtgtccc-gtgtcggacacgcgtcggtgtc 77  Q
    ||||||||||| ||||| ||||||||||| ||||||| ||||||||||||||||||||||    
T  21211412 tatgaagcacaaacactcctcggattaggagtgtcccagtgtcggacacgcgtcggtgtc 21211353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 19 - 150
Target Start/End: Complemental strand, 15864950 - 15864831
Alignment:
Q  19 tatgaagcacagacacttctcggattaggtgtgtcccgtgtcggacacgcgtcggtgtccgacatcgacaccgacacgacacctatgattacactaaatt 118  Q
    |||||||||| ||||||  | |||||||| |||||||||||| |||||| ||||||||||||||            ||||||||||||||||||||||||    
T  15864950 tatgaagcacggacactctttggattaggcgtgtcccgtgtcagacacgtgtcggtgtccgaca------------cgacacctatgattacactaaatt 15864863  T
Q  119 taatcattttcttaaattattatatgtgtcgg 150  Q
      |||||||| | ||||||||||  |||||||    
T  15864862 atatcattttttcaaattattatccgtgtcgg 15864831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 92 - 166
Target Start/End: Complemental strand, 34189483 - 34189409
Alignment:
Q  92 acacgacacctatgattacactaaatttaatcattttcttaaattattatatgtgtcggtgtccgtgcttcatag 166  Q
    |||||||||||| ||||||||| || |   ||||||||| |||||||||| ||||||| ||||||||||||||||    
T  34189483 acacgacacctacgattacactgaaatatgtcattttctcaaattattatctgtgtcgatgtccgtgcttcatag 34189409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 19 - 82
Target Start/End: Complemental strand, 14217021 - 14216958
Alignment:
Q  19 tatgaagcacagacacttctcggattaggtgtgtccc-gtgtcggacacgcgtcggtgtccgaca 82  Q
    |||||||||| |||||||||||||||||||||||||| |||||| ||||| ||| ||||||||||    
T  14217021 tatgaagcacggacacttctcggattaggtgtgtcccagtgtcgtacacgtgtc-gtgtccgaca 14216958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 19 - 82
Target Start/End: Complemental strand, 14223150 - 14223087
Alignment:
Q  19 tatgaagcacagacacttctcggattaggtgtgtccc-gtgtcggacacgcgtcggtgtccgaca 82  Q
    |||||||||| |||||||||||||||||||||||||| |||||| ||||| ||| ||||||||||    
T  14223150 tatgaagcacggacacttctcggattaggtgtgtcccagtgtcgtacacgtgtc-gtgtccgaca 14223087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 19 - 89
Target Start/End: Original strand, 41961580 - 41961650
Alignment:
Q  19 tatgaagcacagacacttctcggattaggtgtgtccc-gtgtcggacacgcgtcggtgtccgacatcgacac 89  Q
    |||||||||| |||||||||||||||||| ||||||| |||||||||||| ||| |||||||| | ||||||    
T  41961580 tatgaagcacggacacttctcggattaggcgtgtcccagtgtcggacacgtgtc-gtgtccgataccgacac 41961650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 88
Target Start/End: Complemental strand, 21149186 - 21149116
Alignment:
Q  18 ttatgaagcacagacacttctcggattaggtgtgtcccgtgtcggacacgcgtcggtgtccgacatcgaca 88  Q
    ||||||| |||||||| | |||||||||||||||| | ||||| ||||| ||| ||||||||||| |||||    
T  21149186 ttatgaaacacagacattcctcggattaggtgtgttcggtgtcagacacacgttggtgtccgacaacgaca 21149116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 56 - 153
Target Start/End: Complemental strand, 25326512 - 25326421
Alignment:
Q  56 gtgtcggacacgcgtcggtgtccgacatcgacaccgacacgacacctatgattacactaaatttaatcattttcttaaattattatatgtgtcggtgt 153  Q
    |||||| ||||||||||||||||||||      || |||||||| |||| |||||||||||||  || ||||| |||||||||||| ||||| |||||    
T  25326512 gtgtcgaacacgcgtcggtgtccgaca------ccaacacgacatctataattacactaaattatattatttttttaaattattatctgtgttggtgt 25326421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 21 - 54
Target Start/End: Complemental strand, 21367382 - 21367349
Alignment:
Q  21 tgaagcacagacacttctcggattaggtgtgtcc 54  Q
    ||||||||||||||||||||||||||||||||||    
T  21367382 tgaagcacagacacttctcggattaggtgtgtcc 21367349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 19 - 56
Target Start/End: Original strand, 49651717 - 49651754
Alignment:
Q  19 tatgaagcacagacacttctcggattaggtgtgtcccg 56  Q
    |||||||||| |||||||||||||||||||||||||||    
T  49651717 tatgaagcacggacacttctcggattaggtgtgtcccg 49651754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 94 - 150
Target Start/End: Complemental strand, 1830397 - 1830341
Alignment:
Q  94 acgacacctatgattacactaaatttaatcattttcttaaattattatatgtgtcgg 150  Q
    |||||||||||||||||||| ||||   ||||||||||||||||||| | |||||||    
T  1830397 acgacacctatgattacactgaattatgtcattttcttaaattattaaaagtgtcgg 1830341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 14209242 - 14209172
Alignment:
Q  19 tatgaagcacagacacttctcggattaggtgtgtcccg-tgtcggacacgcgtcggtgtccgacatcgacac 89  Q
    |||||||||| ||||||||| ||||||||||| ||||| ||||| ||||| ||| |||||||||| ||||||    
T  14209242 tatgaagcacggacacttcttggattaggtgtatcccgatgtcgtacacgtgtc-gtgtccgacaccgacac 14209172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 82
Target Start/End: Original strand, 24204983 - 24205046
Alignment:
Q  20 atgaagcacagacacttctcggattaggtgtgtcccg-tgtcggacacgcgtcggtgtccgaca 82  Q
    ||||||||| |||||| |||| |||||| |||||| | ||||||||||||||| ||||||||||    
T  24204983 atgaagcacggacactcctcgaattaggcgtgtcctggtgtcggacacgcgtcagtgtccgaca 24205046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 55401193 - 55401123
Alignment:
Q  19 tatgaagcacagacacttctcggattaggtgtgtc-ccgtgtcggacacgcgtcggtgtccgacatcgacac 89  Q
    |||||||||| |||||| ||||||||||| ||||| | |||||||||||| ||| |||||||||| ||||||    
T  55401193 tatgaagcacggacactcctcggattaggcgtgtctcggtgtcggacacgtgtc-gtgtccgacaccgacac 55401123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 91 - 145
Target Start/End: Original strand, 3730167 - 3730221
Alignment:
Q  91 gacacgacacctatgattacactaaatttaatcattttcttaaattattatatgt 145  Q
    ||||||||||||||||||||||| ||||   ||||| ||| ||||||||||||||    
T  3730167 gacacgacacctatgattacactgaattatgtcattatctcaaattattatatgt 3730221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 88
Target Start/End: Complemental strand, 37077488 - 37077418
Alignment:
Q  19 tatgaagcacagacacttctcggattaggtgtgt-cccgtgtcggacacgcgtcggtgtccgacatcgaca 88  Q
    |||||||||| |||| | || ||||||||||||| ||||||||||||| ||||| |||| ||||| |||||    
T  37077488 tatgaagcacggacattccttggattaggtgtgtccccgtgtcggacatgcgtccgtgtacgacaccgaca 37077418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 84 - 141
Target Start/End: Original strand, 12704652 - 12704709
Alignment:
Q  84 cgacaccgacacgacacctatgattacactaaatttaatcattttcttaaattattat 141  Q
    |||||||||||||||||||||||||||| | ||||   ||||||| | ||||||||||    
T  12704652 cgacaccgacacgacacctatgattacattgaattatgtcattttttcaaattattat 12704709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 67
Target Start/End: Complemental strand, 17276845 - 17276796
Alignment:
Q  19 tatgaagcacagacacttctcggattaggtgtgtc-ccgtgtcggacacg 67  Q
    |||||||||| |||||||||||||||||||| ||| | ||||||||||||    
T  17276845 tatgaagcacggacacttctcggattaggtgcgtctcggtgtcggacacg 17276796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 95
Target Start/End: Complemental strand, 27505369 - 27505294
Alignment:
Q  19 tatgaagcacagacacttctcggattaggtgtgtccc-gtgtcggacacgcgtcggtgtccgacatcgacaccgacac 95  Q
    |||||||||| |||||| |||||||||||  |||||| |||||||||||| ||| ||||| |||| ||||||||||||    
T  27505369 tatgaagcacggacactcctcggattaggcatgtcccggtgtcggacacgtgtc-gtgtcagaca-cgacaccgacac 27505294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 67
Target Start/End: Original strand, 27277781 - 27277829
Alignment:
Q  19 tatgaagcacagacacttctcggattaggtgtgtcccgtgtcggacacg 67  Q
    ||||||||||| ||||| ||||||||||   ||||||||||||||||||    
T  27277781 tatgaagcacatacactcctcggattagacatgtcccgtgtcggacacg 27277829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 66
Target Start/End: Original strand, 34185053 - 34185101
Alignment:
Q  19 tatgaagcacagacacttctcggattaggtgtgtccc-gtgtcggacac 66  Q
    |||||||||| |||||| ||||||||||| ||||||| |||||||||||    
T  34185053 tatgaagcacggacactcctcggattaggcgtgtcccggtgtcggacac 34185101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 8e-19; HSPs: 23)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 19 - 141
Target Start/End: Complemental strand, 34446689 - 34446572
Alignment:
Q  19 tatgaagcacagacacttctcggattaggtgtgtccc-gtgtcggacacgcgtcggtgtccgacatcgacaccgacacgacacctatgattacactaaat 117  Q
    |||||||||| |||||| || |||||||||||||||| ||||| || ||||||||||||      | ||||||||||||||||||||||||||||| |||    
T  34446689 tatgaagcacggacactccttggattaggtgtgtcccagtgtcagatacgcgtcggtgt------tggacaccgacacgacacctatgattacactgaat 34446596  T
Q  118 ttaatcattttcttaaattattat 141  Q
    |   ||||||||| ||||||||||    
T  34446595 tatgtcattttctcaaattattat 34446572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 86 - 150
Target Start/End: Complemental strand, 6389805 - 6389741
Alignment:
Q  86 acaccgacacgacacctatgattacactaaatttaatcattttcttaaattattatatgtgtcgg 150  Q
    |||||||||||||||||||||||||||||||||  |||||||||| ||||||||||  |||||||    
T  6389805 acaccgacacgacacctatgattacactaaattatatcattttctcaaattattatccgtgtcgg 6389741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 84 - 141
Target Start/End: Original strand, 17168458 - 17168515
Alignment:
Q  84 cgacaccgacacgacacctatgattacactaaatttaatcattttcttaaattattat 141  Q
    ||||||||||||||||||||| |||||||||||||  |||||||||| ||||||||||    
T  17168458 cgacaccgacacgacacctattattacactaaattatatcattttctcaaattattat 17168515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 40 - 139
Target Start/End: Original strand, 2153838 - 2153937
Alignment:
Q  40 ggattaggtgtgtcccgtgtcggacacgcgtcggtgtccgacatcgacaccgacacgacacctatgattacactaaatttaatcattttcttaaattatt 139  Q
    |||||||| |||||| |||||||| | |  | | |||| |||||| ||||| || |||||||||| |||||||||||||  |||||||||||||||||||    
T  2153838 ggattaggcgtgtcctgtgtcggatatgtattgctgtctgacatcaacaccaacgcgacacctataattacactaaattatatcattttcttaaattatt 2153937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 19 - 141
Target Start/End: Complemental strand, 26247549 - 26247433
Alignment:
Q  19 tatgaagcacagacacttctcggattaggtgtgtcccgtgtcggacacgcgtcggtgtccgacatcgacaccgacacgacacctatgattacactaaatt 118  Q
    |||||| ||| |||||| ||| |||||||||||| | ||||| |||||| || |||||||||||      ||||||||| ||||||||||| |||||| |    
T  26247549 tatgaaacacggacactcctcagattaggtgtgttcggtgtcagacacgtgttggtgtccgaca------ccgacacgaaacctatgattatactaaaat 26247456  T
Q  119 taatcattttcttaaattattat 141  Q
       ||||||||||||||||||||    
T  26247455 atgtcattttcttaaattattat 26247433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 19 - 63
Target Start/End: Complemental strand, 6389850 - 6389806
Alignment:
Q  19 tatgaagcacagacacttctcggattaggtgtgtcccgtgtcgga 63  Q
    |||||||||| |||||||||||||||||| |||||||||||||||    
T  6389850 tatgaagcacggacacttctcggattaggagtgtcccgtgtcgga 6389806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 19 - 166
Target Start/End: Original strand, 34894969 - 34895111
Alignment:
Q  19 tatgaagcacagacacttctcggattaggtgtgtccc-gtgtcggacacgcgtcggtgtccgacatcgacaccgacacgacacctatgattacactaaat 117  Q
    |||||||||| |||||| |||  |||||||||||||| |||||||||| || |  || |||||||| ||||| ||||     |||||||||||||| |||    
T  34894969 tatgaagcacggacactcctcatattaggtgtgtccctgtgtcggacaagcattagtttccgacat-gacactgaca-----cctatgattacactgaat 34895062  T
Q  118 ttaatcattttcttaaattattatatgtgtcggtgtccgtgcttcatag 166  Q
    |  || ||||||| ||||||||||| ||||  ||||||||| |||||||    
T  34895063 tgtataattttctcaaattattataggtgtttgtgtccgtgtttcatag 34895111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 34595252 - 34595182
Alignment:
Q  19 tatgaagcacagacacttctcggattaggtgtgtccc-gtgtcggacacgcgtcggtgtccgacatcgacac 89  Q
    |||||||||| |||||| ||||||||||||||||||| ||||| |||||| ||| |||||||||| ||||||    
T  34595252 tatgaagcacggacactcctcggattaggtgtgtcccggtgtcagacacgtgtc-gtgtccgacaccgacac 34595182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 4878060 - 4877991
Alignment:
Q  19 tatgaagcacagacacttctcggattaggtgtgtcccgtgtcggacacgcgtcggtgtccgacatcgacac 89  Q
    |||||||||| |||||| ||||||||||| |||||| |||||||||| | ||| |||||||||| ||||||    
T  4878060 tatgaagcacggacactcctcggattaggcgtgtcctgtgtcggacatgtgtc-gtgtccgacaccgacac 4877991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 79 - 141
Target Start/End: Original strand, 19602171 - 19602233
Alignment:
Q  79 gacatcgacaccgacacgacacctatgattacactaaatttaatcattttcttaaattattat 141  Q
    ||||| ||||||||||| | ||||||||||||||| ||||  |||||||||| ||||||||||    
T  19602171 gacatggacaccgacacaatacctatgattacactgaattatatcattttctcaaattattat 19602233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 19 - 150
Target Start/End: Original strand, 9107300 - 9107431
Alignment:
Q  19 tatgaagcacagacacttctcggattaggtgtgtccc-gtgtcggacacgcgtcggtgtccgacatcgacaccgaca-cgacacctatgattacactaaa 116  Q
    |||||||||| | |||| ||||||||||||||||||| ||||||||||| |||  |||||||||| ||||| ||||| |||||| | | |||||||| ||    
T  9107300 tatgaagcacgggcactcctcggattaggtgtgtcccggtgtcggacacacgt-tgtgtccgacaccgaca-cgacaccgacacttgtaattacactgaa 9107397  T
Q  117 tttaatcattttcttaaattattatatgtgtcgg 150  Q
    |||  | ||||| | |||||||||  ||||||||    
T  9107398 ttttgtgattttttcaaattattagctgtgtcgg 9107431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 31959269 - 31959220
Alignment:
Q  18 ttatgaagcacagacacttctcggattaggtgtgtccc-gtgtcggacac 66  Q
    ||||||||||| |||||| ||||||||||||||||||| |||||||||||    
T  31959269 ttatgaagcacggacactcctcggattaggtgtgtcccggtgtcggacac 31959220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 19 - 56
Target Start/End: Original strand, 32839572 - 32839609
Alignment:
Q  19 tatgaagcacagacacttctcggattaggtgtgtcccg 56  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  32839572 tatgaagcacagacacttctcggattaggcgtgtcccg 32839609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 89
Target Start/End: Original strand, 1191644 - 1191711
Alignment:
Q  19 tatgaagcacagacacttctcggattaggtgtgtcccgtgtcggacacgcgtcggtgtccgacatcgacac 89  Q
    ||||||||||||||  | ||||||||||||||||   |||||||||||||||| |||||| ||||||||||    
T  1191644 tatgaagcacagacggtcctcggattaggtgtgt--ggtgtcggacacgcgtc-gtgtccaacatcgacac 1191711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 67
Target Start/End: Original strand, 9025448 - 9025495
Alignment:
Q  21 tgaagcacagacacttctcggattaggtgtgtccc-gtgtcggacacg 67  Q
    |||||||| |||||||||||||||||| ||||||| ||||||||||||    
T  9025448 tgaagcacggacacttctcggattaggcgtgtcccggtgtcggacacg 9025495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 21 - 66
Target Start/End: Original strand, 8389411 - 8389457
Alignment:
Q  21 tgaagcacagacacttctcggattaggtgtgtccc-gtgtcggacac 66  Q
    |||||||| |||||| ||||||||||||||||||| |||||||||||    
T  8389411 tgaagcacggacactcctcggattaggtgtgtcccggtgtcggacac 8389457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 72
Target Start/End: Original strand, 8776909 - 8776963
Alignment:
Q  19 tatgaagcacagacacttctcggattaggtgtgtc-ccgtgtcggacacgcgtcg 72  Q
    |||||||||| |||||| ||||||||||||||||| | |||||||||||| ||||    
T  8776909 tatgaagcacggacactcctcggattaggtgtgtctcggtgtcggacacgtgtcg 8776963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 55
Target Start/End: Original strand, 27903961 - 27903999
Alignment:
Q  17 cttatgaagcacagacacttctcggattaggtgtgtccc 55  Q
    |||||||| |||||||||| |||||||||||||||||||    
T  27903961 cttatgaatcacagacactcctcggattaggtgtgtccc 27903999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 89 - 154
Target Start/End: Original strand, 13689193 - 13689258
Alignment:
Q  89 ccgacacgacacctatgattacactaaatttaatcattttcttaaattattatatgtgtcggtgtc 154  Q
    ||||||||| ||||||||||||| | || ||  | ||||||| |||||||||| ||||||||||||    
T  13689193 ccgacacgatacctatgattacattgaaatttgttattttctcaaattattatctgtgtcggtgtc 13689258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 95
Target Start/End: Original strand, 17327591 - 17327666
Alignment:
Q  19 tatgaagcacagacacttctcggattaggtgtgtccc-gtgtcggacacgcgtcggtgtccgacatcgacaccgacac 95  Q
    |||||||||| |||||| ||||||||||| ||||||| ||||| |||||| ||| |||||||||| |||||| |||||    
T  17327591 tatgaagcacggacactcctcggattaggcgtgtccctgtgtcagacacgtgtc-gtgtccgaca-cgacactgacac 17327666  T

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Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 85 - 158
Target Start/End: Original strand, 30781290 - 30781363
Alignment:
Q  85 gacaccgacacgacacctatgattacactaaatttaatcattttcttaaattattatatgtgtcggtgtccgtg 158  Q
    |||||||||| |||||||||||||||| | ||||   ||||||||| ||||||||| | ||||| |||| ||||    
T  30781290 gacaccgacatgacacctatgattacaattaattatgtcattttctcaaattattacacgtgtcagtgttcgtg 30781363  T

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Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 66
Target Start/End: Complemental strand, 4388198 - 4388150
Alignment:
Q  19 tatgaagcacagacacttctcggattaggtgtgtcc-cgtgtcggacac 66  Q
    ||||||||||||||||||||||||| ||| |||||| |||||| |||||    
T  4388198 tatgaagcacagacacttctcggataaggcgtgtcctcgtgtcagacac 4388150  T

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Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 20 - 95
Target Start/End: Complemental strand, 12696446 - 12696372
Alignment:
Q  20 atgaagcacagacacttctcggattaggtgtgtccc-gtgtcggacacgcgtcggtgtccgacatcgacaccgacac 95  Q
    |||||||||||||||| || |||| ||||||||||| ||||| |||||| ||| |||||||||| |||||| |||||    
T  12696446 atgaagcacagacactccttggataaggtgtgtcccggtgtcagacacgtgtc-gtgtccgaca-cgacactgacac 12696372  T

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Target: scaffold0652 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0652
Description:

Target: scaffold0652; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 18 - 89
Target Start/End: Original strand, 402 - 473
Alignment:
Q  18 ttatgaagcacagacacttctcggattaggtgtgtccc-gtgtcggacacgcgtcggtgtccgacatcgacac 89  Q
    ||||||||||| |||||| ||||||||||||||||||| |||||||||||||||| |||||||||| ||||||    
T  402 ttatgaagcacggacactcctcggattaggtgtgtcccggtgtcggacacgcgtc-gtgtccgacaccgacac 473  T

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Target: chr1 (Bit Score: 44; Significance: 7e-16; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 19 - 141
Target Start/End: Original strand, 42004883 - 42004999
Alignment:
Q  19 tatgaagcacagacacttctcggattaggtgtgtcccgtgtcggacacgcgtcggtgtccgacatcgacaccgacacgacacctatgattacactaaatt 118  Q
    |||||||||| ||||||  ||| |||||| ||||   |||||||||| |||||||||||||||      |||||||| ||||||||||||||||||||||    
T  42004883 tatgaagcacggacactcttcgaattaggcgtgtttagtgtcggacatgcgtcggtgtccgac------accgacacaacacctatgattacactaaatt 42004976  T
Q  119 taatcattttcttaaattattat 141  Q
       ||||||||| ||||||||||    
T  42004977 atgtcattttctcaaattattat 42004999  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 20 - 95
Target Start/End: Original strand, 1486646 - 1486720
Alignment:
Q  20 atgaagcacagacacttctcggattaggtgtgtccc-gtgtcggacacgcgtcggtgtccgacatcgacaccgacac 95  Q
    |||||||||||||||| ||||||||||| ||||||| |||||||||||| ||| |||||||||| ||||||||||||    
T  1486646 atgaagcacagacactcctcggattaggcgtgtcccggtgtcggacacgtgtc-gtgtccgaca-cgacaccgacac 1486720  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 86 - 154
Target Start/End: Original strand, 39101179 - 39101247
Alignment:
Q  86 acaccgacacgacacctatgattacactaaatttaatcattttcttaaattattatatgtgtcggtgtc 154  Q
    ||||||| ||||||||||| |||||||| ||||   | ||||||| |||||||||||||||||||||||    
T  39101179 acaccgaaacgacacctataattacacttaattatgttattttctcaaattattatatgtgtcggtgtc 39101247  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 90 - 156
Target Start/End: Complemental strand, 6574047 - 6573981
Alignment:
Q  90 cgacacgacacctatgattacactaaatttaatcattttcttaaattattatatgtgtcggtgtccg 156  Q
    |||||| ||||||||||||||||||||||  |||||| ||| ||||||| ||  |||||||||||||    
T  6574047 cgacacaacacctatgattacactaaattatatcattgtctcaaattatcatccgtgtcggtgtccg 6573981  T

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Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 19 - 95
Target Start/End: Original strand, 20157285 - 20157361
Alignment:
Q  19 tatgaagcacagacacttctcggattaggtgtgtcccg-tgtcggacacgcgtcggtgtccgacatcgacaccgacac 95  Q
    |||||||||| || ||| |||  |||||||||||| || ||||||||||||||||||||| |||| ||||||||||||    
T  20157285 tatgaagcacggatactcctcaaattaggtgtgtctcggtgtcggacacgcgtcggtgtcggaca-cgacaccgacac 20157361  T

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Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 67
Target Start/End: Complemental strand, 34741964 - 34741916
Alignment:
Q  19 tatgaagcacagacacttctcggattaggtgtgtcccgtgtcggacacg 67  Q
    |||||||||| ||||||  |||||||||| |||||||||||||||||||    
T  34741964 tatgaagcacggacactcttcggattaggcgtgtcccgtgtcggacacg 34741916  T

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Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 89
Target Start/End: Original strand, 18190049 - 18190119
Alignment:
Q  19 tatgaagcacagacacttctcggattaggtgtgtccc-gtgtcggacacgcgtcggtgtccgacatcgacac 89  Q
    |||||||| || ||||| ||||||||||||||||||| |||||||||||| ||  ||||| |||||||||||    
T  18190049 tatgaagcgcatacactcctcggattaggtgtgtcccggtgtcggacacgtgt-tgtgtctgacatcgacac 18190119  T

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Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 73
Target Start/End: Original strand, 18556386 - 18556441
Alignment:
Q  19 tatgaagcacagacacttctcggattaggtgtgtccc-gtgtcggacacgcgtcgg 73  Q
    |||||||||| |||||||||||||||||| ||||||| |||||||| ||| |||||    
T  18556386 tatgaagcacggacacttctcggattaggcgtgtcccagtgtcggatacgtgtcgg 18556441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 107 - 154
Target Start/End: Complemental strand, 23440051 - 23440004
Alignment:
Q  107 ttacactaaatttaatcattttcttaaattattatatgtgtcggtgtc 154  Q
    ||||||||||||  |||||||||| ||||||||||| |||||||||||    
T  23440051 ttacactaaattatatcattttctcaaattattatacgtgtcggtgtc 23440004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 32900009 - 32899938
Alignment:
Q  19 tatgaagcacagacacttctcggattaggtgtgtcccg-tgtcggacacgcgtcggtgtccgacatcgacac 89  Q
    |||||||||  |||| | ||||||||||| |||||||| |||| |||| |||||||||||||||| ||||||    
T  32900009 tatgaagcaaggacaatcctcggattaggggtgtcccggtgtccgacatgcgtcggtgtccgacaccgacac 32899938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 37598949 - 37598879
Alignment:
Q  19 tatgaagcacagacacttctcggattaggtgtgtccc-gtgtcggacacgcgtcggtgtccgacatcgacac 89  Q
    |||||||||| |||||| ||||||||||| |||||||  ||||||||||| ||| |||||||||| ||||||    
T  37598949 tatgaagcacggacactcctcggattaggcgtgtcccattgtcggacacgtgtc-gtgtccgacaccgacac 37598879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 89
Target Start/End: Original strand, 42359391 - 42359460
Alignment:
Q  20 atgaagcacagacacttctcggattaggtgtgtccc-gtgtcggacacgcgtcggtgtccgacatcgacac 89  Q
    ||||||||| |||||| ||||||||||| ||||||| ||||||||||| ||||  ||||||||| ||||||    
T  42359391 atgaagcacggacactcctcggattaggcgtgtcccggtgtcggacacacgtc-ttgtccgacaccgacac 42359460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 84 - 141
Target Start/End: Original strand, 6936395 - 6936452
Alignment:
Q  84 cgacaccgacacgacacctatgattacactaaatttaatcattttcttaaattattat 141  Q
    |||||| ||||||||||||||||||||||| ||||   ||||||||| | ||||||||    
T  6936395 cgacacagacacgacacctatgattacacttaattatgtcattttctcagattattat 6936452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 67
Target Start/End: Original strand, 19562557 - 19562605
Alignment:
Q  19 tatgaagcacagacacttctcggattaggtgtgtccc-gtgtcggacacg 67  Q
    |||||||||| |||||| ||||||||||||||||||| ||||||||||||    
T  19562557 tatgaagcac-gacactcctcggattaggtgtgtccctgtgtcggacacg 19562605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 67
Target Start/End: Original strand, 23219608 - 23219653
Alignment:
Q  23 aagcacagacacttctcggattaggtgtgtc-ccgtgtcggacacg 67  Q
    ||||||| ||||||||||||||||||||||| | ||||||||||||    
T  23219608 aagcacaaacacttctcggattaggtgtgtcacggtgtcggacacg 23219653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 52
Target Start/End: Original strand, 23705417 - 23705454
Alignment:
Q  15 atcttatgaagcacagacacttctcggattaggtgtgt 52  Q
    |||| |||||||||| ||||||||||||||||||||||    
T  23705417 atctaatgaagcacatacacttctcggattaggtgtgt 23705454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 56
Target Start/End: Complemental strand, 42325677 - 42325640
Alignment:
Q  19 tatgaagcacagacacttctcggattaggtgtgtcccg 56  Q
    ||||||||||||||||| |||| |||||||||||||||    
T  42325677 tatgaagcacagacactcctcgaattaggtgtgtcccg 42325640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 150
Target Start/End: Complemental strand, 47989626 - 47989496
Alignment:
Q  19 tatgaagcacagacacttctcggattaggtgtgtcccg-tgtcggacacgcgtcggtgtccgacatcgacaccgaca-cgacacctatgattacactaaa 116  Q
    |||||||||| |||||| ||||||||||| |||||||| |||| |||| | ||| |||||||||| ||||| ||||| |||||| | | |||||||| ||    
T  47989626 tatgaagcacggacactcctcggattaggcgtgtcccgatgtcagacatgtgtc-gtgtccgacaccgaca-cgacaccgacacttgtaattacactgaa 47989529  T
Q  117 tttaatcattttcttaaattattatatgtgtcgg 150  Q
    ||   | ||||| |||||||||||| ||||||||    
T  47989528 ttatgtgatttttttaaattattat-tgtgtcgg 47989496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 19 - 118
Target Start/End: Complemental strand, 241723 - 241624
Alignment:
Q  19 tatgaagcacagacacttctcggattaggtgtgtccc-gtgtcggacacgcgtcggtgtccgacatcgacaccgaca-cgacacctatgattacactaaa 116  Q
    |||||||||| |||||||||||||||||| ||||||| |||||||||||| ||| |||||||||| | ||| ||||| ||||||  || |||||||||||    
T  241723 tatgaagcacggacacttctcggattaggcgtgtcccggtgtcggacacgtgtc-gtgtccgacaccaaca-cgacaccgacactcataattacactaaa 241626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 68
Target Start/End: Original strand, 236915 - 236965
Alignment:
Q  19 tatgaagcacagacacttctcggattaggtgtgtccc-gtgtcggacacgc 68  Q
    ||||||||||||||||| ||| ||||||||||||||| ||||| |||||||    
T  236915 tatgaagcacagacactcctcagattaggtgtgtcccggtgtcagacacgc 236965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 19 - 138
Target Start/End: Complemental strand, 57052 - 56932
Alignment:
Q  19 tatgaagcacagacacttctcggattaggtgtgtcccg-tgtcggacacgcgtcggtgtccgacatcgacaccgacac-gacacctatgattacactaaa 116  Q
    ||||||||||| ||||| ||| |||||||||| | ||| |||| ||||||| | ||| |||| || |||||| ||||| ||||| |||||||||||| ||    
T  57052 tatgaagcacaaacactcctcagattaggtgttttccggtgtcagacacgcattggtctccgtcaccgacac-gacactgacacttatgattacactgaa 56954  T
Q  117 tttaatcattttcttaaattat 138  Q
    ||  |||||||||| |||||||    
T  56953 ttatatcattttctcaaattat 56932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 53
Target Start/End: Complemental strand, 21406 - 21372
Alignment:
Q  19 tatgaagcacagacacttctcggattaggtgtgtc 53  Q
    ||||||||||||||||||||||||||||| |||||    
T  21406 tatgaagcacagacacttctcggattaggcgtgtc 21372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0128 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 32824 - 32774
Alignment:
Q  17 cttatgaagcacagacacttctcggattaggtgtgtccc-gtgtcggacac 66  Q
    |||||||||||| |||||| ||||||||| ||||||||| |||||||||||    
T  32824 cttatgaagcaccgacactcctcggattatgtgtgtcccggtgtcggacac 32774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0199 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 89 - 141
Target Start/End: Complemental strand, 2008 - 1956
Alignment:
Q  89 ccgacacgacacctatgattacactaaatttaatcattttcttaaattattat 141  Q
    |||||||||||||||||||||||||||| |   ||||||||  ||||||||||    
T  2008 ccgacacgacacctatgattacactaaaatatgtcattttcacaaattattat 1956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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