View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18163_high_8 (Length: 329)

Name: NF18163_high_8
Description: NF18163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18163_high_8
NF18163_high_8
[»] chr7 (4 HSPs)
chr7 (7-329)||(36259164-36259486)
chr7 (25-301)||(36261978-36262270)
chr7 (220-329)||(36254498-36254607)
chr7 (25-151)||(36254263-36254393)
[»] chr4 (7 HSPs)
chr4 (7-317)||(19353340-19353667)
chr4 (25-319)||(19354976-19355288)
chr4 (158-317)||(19356605-19356764)
chr4 (25-319)||(19358049-19358361)
chr4 (231-329)||(19360594-19360692)
chr4 (223-329)||(35766161-35766267)
chr4 (280-329)||(11240745-11240794)
[»] chr8 (2 HSPs)
chr8 (253-329)||(29151107-29151183)
chr8 (276-329)||(26387145-26387198)
[»] chr2 (4 HSPs)
chr2 (246-313)||(2585800-2585867)
chr2 (251-329)||(2576037-2576115)
chr2 (252-327)||(2595169-2595244)
chr2 (252-329)||(2580420-2580497)


Alignment Details
Target: chr7 (Bit Score: 303; Significance: 1e-170; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 7 - 329
Target Start/End: Original strand, 36259164 - 36259486
Alignment:
Q  7 atttcaaagaataaagagaaaaccaaaaccctaatataacaagagagaaagaaaagcctttggctgcagaagagtaagaggaagacttcaaaaaccaaaa 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  36259164 atttcaaagaataaagagaaaaccaaaaccctaatataacaagagagaaagaaaagcctttggctgcagaagagtaagaggaagacttctaaaaccaaaa 36259263  T
Q  107 ccctgtcaaatcagaaactcaaaacatgagaggcaagtgtccacgcaaaaagaaaatattatctcacaagactgattgcagtacgagattcccaatcaaa 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||    
T  36259264 ccctgtcaaatcagaaactcaaaacatgagaggcaagtgtccacgcaaaatgaaaatattatctcacaagactgattgcagtacgagattcccgatcaaa 36259363  T
Q  207 ggtgatgagacggtgttcctccccgatgaacttgtcactgaagttctttcattttccgatgtgaagttccttatgcaaatgaggtgtgtatgcaagtctt 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  36259364 ggtgatgagacggtgttcctccccgatgaacttgtcactgaagttctttcattttccgatgtgaagttccttatgcaaatgagatgtgtatgcaagtctt 36259463  T
Q  307 ggaaatctataatctctgatcct 329  Q
    ||||||||||||| |||||||||    
T  36259464 ggaaatctataatttctgatcct 36259486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 25 - 301
Target Start/End: Original strand, 36261978 - 36262270
Alignment:
Q  25 aaaaccaaaaccctaatataacaagagagaaagaaaagcctt------tggctgcagaagagtaagaggaa---gacttcaaaaaccaaaaccctgtcaa 115  Q
    ||||||||||||||||| ||||||||||||||| ||||||||      |||||| ||||||||||||||||   |||  ||||||||||||||||  |||    
T  36261978 aaaaccaaaaccctaatctaacaagagagaaaggaaagccttaatcagtggctgtagaagagtaagaggaaccagaccgcaaaaaccaaaaccctaacaa 36262077  T
Q  116 atcagaaactcaaaacatgagaggcaagtgtccacgcaaaaag---------aaaatattatctcacaagactgattgcagtacgagattcccaatcaaa 206  Q
    |||||||||||||||  |||||||||| ||||| |||| ||||         | |||||||||||||||  ||||| ||||||||||||| || ||||||    
T  36262078 atcagaaactcaaaa--tgagaggcaaatgtccccgcagaaaggtgaagaagagaatattatctcacaaatctgatcgcagtacgagattaccgatcaaa 36262175  T
Q  207 ggtgatgagacggtgttcctccccgatgaacttgtcactgaagttctttcattttccgatgtgaagttccttatgcaaatgaggtgtgtatgcaa 301  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||    
T  36262176 ggtgatgacacggtgttcctccccgatgaacttgtcactgaagttctttcattttctgatgttaaattccttatgcaaatgaggtgtgtatgcaa 36262270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 220 - 329
Target Start/End: Original strand, 36254498 - 36254607
Alignment:
Q  220 tgttcctccccgatgaacttgtcactgaagttctttcattttccgatgtgaagttccttatgcaaatgaggtgtgtatgcaagtcttggaaatctataat 319  Q
    |||||||||||||||||||| |||  |||||||||||||||||||||||||| ||||||||||||||||||||  | |||||||||||||||||| ||||    
T  36254498 tgttcctccccgatgaacttttcatggaagttctttcattttccgatgtgaaattccttatgcaaatgaggtgcctttgcaagtcttggaaatctctaat 36254597  T
Q  320 ctctgatcct 329  Q
     || ||||||    
T  36254598 ttccgatcct 36254607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 25 - 151
Target Start/End: Original strand, 36254263 - 36254393
Alignment:
Q  25 aaaaccaaaaccctaatataacaagagagaaagaaaagccttt----ggctgcagaagagtaagaggaag---acttcaaaaaccaaaaccctgtcaaat 117  Q
    |||||||||||||||||||||  ||||||||||||||||   |    |||||||||||| ||||||||||   || |||||||||||||||||   ||||    
T  36254263 aaaaccaaaaccctaatataa--agagagaaagaaaagctaatcagcggctgcagaagattaagaggaagcagacctcaaaaaccaaaaccctaa-aaat 36254359  T
Q  118 cagaaactcaaaacatgagaggcaagtgtccacg 151  Q
    ||||||||||||| ||| ||| | ||||||||||    
T  36254360 cagaaactcaaaaaatgggagacgagtgtccacg 36254393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 140; Significance: 3e-73; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 7 - 317
Target Start/End: Original strand, 19353340 - 19353667
Alignment:
Q  7 atttcaaagaataaagagaaaaccaaaaccctaatataacaagagagaaagaaaagcctt------tggctgcagaagagtaagaggaag---acttcaa 97  Q
    ||||||||||| ||| | ||||||||||||||||| |||||||||| |||||||||||||      |||||  |  |||||| ||||||    || ||||    
T  19353340 atttcaaagaaaaaa-ataaaaccaaaaccctaatctaacaagagaaaaagaaaagccttaatcagtggctataagagagtacgaggaaccatacctcaa 19353438  T
Q  98 aaaccaaaaccctgtcaaatcagaaactcaaaacatgagaggcaagtgtccacgc---------aaaaagaaaatattatctcacaagactgattgcagt 188  Q
    |||||||||||||  |||||||| ||||||||| ||||||||||||||||||||          || |||||||| ||||||||||| |||||| || ||    
T  19353439 aaaccaaaaccctaacaaatcaggaactcaaaaaatgagaggcaagtgtccacgttagaaggcgaagaagaaaatgttatctcacaaaactgatcgccgt 19353538  T
Q  189 acgagattcccaatcaaaggtgatgagacggtgttcctccccgatgaacttgtcactgaagttctttcattttccgatgtgaagttccttatgcaaatga 288  Q
    ||||||||  | |||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| || ||||||||||||||||    
T  19353539 acgagattgtcgatcaaaggtgatgacacggtgttcctccctgatgaacttgtcactgaagttctttcattttccgatgttaaattccttatgcaaatga 19353638  T
Q  289 ggtgtgtatgcaagtcttggaaatctata 317  Q
    |||||||||||||||||||||||||||||    
T  19353639 ggtgtgtatgcaagtcttggaaatctata 19353667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 25 - 319
Target Start/End: Original strand, 19354976 - 19355288
Alignment:
Q  25 aaaaccaaaaccctaatataacaagagagaaagaaaagcctt------tggctgcagaagagtaagaggaa---gacttcaaaaaccaaaaccctgtcaa 115  Q
    ||||||||||||||||| ||| | |||| |||||||||||||      | | || ||||||||||||||||   ||| |||||||||||||||||  |||    
T  19354976 aaaaccaaaaccctaatctaaaaggagaaaaagaaaagccttaattagttgttgtagaagagtaagaggaacaagacctcaaaaaccaaaaccctaacaa 19355075  T
Q  116 atcagaaactcaaaacatgagaggcaagtgtccacgcaaaaag---------aaaatattatctcacaagactgattgcagtacgagattcccaatcaaa 206  Q
     |||| ||||||||| || |||||||||| ||||||| |||||         ||||| ||| ||||||| ||| || || |||||||||| || ||||||    
T  19355076 ctcaggaactcaaaaaattagaggcaagtctccacgctaaaaggtgaagaagaaaatgttaactcacaaaacttatcgccgtacgagattaccgatcaaa 19355175  T
Q  207 ggtgatgagacggtgttcctccccgatgaacttgtcactgaagttctttcattttccgatgtgaagttccttatgcaaatgaggtgtgtatgcaagtctt 306  Q
    |||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |||||| || ||||||||||||||||||||||||||||||||||    
T  19355176 ggtgatgaaacggtgttcctccctgatgaacttgtcactgaagttctttcatttttcgatgttaaattccttatgcaaatgaggtgtgtatgcaagtctt 19355275  T
Q  307 ggaaatctataat 319  Q
    |||||||||||||    
T  19355276 ggaaatctataat 19355288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 158 - 317
Target Start/End: Original strand, 19356605 - 19356764
Alignment:
Q  158 gaaaatattatctcacaagactgattgcagtacgagattcccaatcaaaggtgatgagacggtgttcctccccgatgaacttgtcactgaagttctttca 257  Q
    |||||| |||| | |||| |||||| || |||||||||| || ||||||| |||||||||  ||||||||||||||||||||||||||||||||||||||    
T  19356605 gaaaatgttatattacaaaactgatcgccgtacgagattaccgatcaaagatgatgagacaatgttcctccccgatgaacttgtcactgaagttctttca 19356704  T
Q  258 ttttccgatgtgaagttccttatgcaaatgaggtgtgtatgcaagtcttggaaatctata 317  Q
    ||||||| ||| || ||||||||||||||||||||||||||||| ||||| |||||||||    
T  19356705 ttttccggtgttaaattccttatgcaaatgaggtgtgtatgcaattcttgaaaatctata 19356764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 25 - 319
Target Start/End: Original strand, 19358049 - 19358361
Alignment:
Q  25 aaaaccaaaaccctaatataacaagagagaaagaaaagcctt------tggctgcagaagagtaagaggaa---gacttcaaaaaccaaaaccctgtcaa 115  Q
    ||||| |||||| |||| |||  ||||| |||||||||||||      |||||| ||||||||||||||||   |||  ||||||||||||||||   ||    
T  19358049 aaaactaaaaccgtaatctaaatagagaaaaagaaaagccttaatcaatggctgtagaagagtaagaggaaccagaccacaaaaaccaaaaccctaataa 19358148  T
Q  116 atcagaaactcaaaacatgagaggcaagtgtccacgcaaaaag---------aaaatattatctcacaagactgattgcagtacgagattcccaatcaaa 206  Q
    ||||| ||||||||| |||||||||||||||||||||  ||||         ||||| ||||||||||| |||||  |  ||| |||||| |  ||||||    
T  19358149 atcaggaactcaaaaaatgagaggcaagtgtccacgctgaaagttgaagaataaaatgttatctcacaaaactgaccgtcgtatgagattactgatcaaa 19358248  T
Q  207 ggtgatgagacggtgttcctccccgatgaacttgtcactgaagttctttcattttccgatgtgaagttccttatgcaaatgaggtgtgtatgcaagtctt 306  Q
    |||||| | |||||||||||||| ||||| ||||||||| |||||||||| ||||||||||| || |||||||||||||||||||||||||| |  ||||    
T  19358249 ggtgataacacggtgttcctccctgatgagcttgtcactaaagttctttcgttttccgatgttaaattccttatgcaaatgaggtgtgtatggatctctt 19358348  T
Q  307 ggaaatctataat 319  Q
    |||||||||||||    
T  19358349 ggaaatctataat 19358361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 231 - 329
Target Start/End: Original strand, 19360594 - 19360692
Alignment:
Q  231 gatgaacttgtcactgaagttctttcattttccgatgtgaagttccttatgcaaatgaggtgtgtatgcaagtcttggaaatctataatctctgatcct 329  Q
    ||||||||| |||||||||||||||| ||    |||||||| ||||| ||| ||||||||||| ||| |||||||||||||||| |||| |||||||||    
T  19360594 gatgaacttatcactgaagttctttccttcgttgatgtgaaattcctcatgtaaatgaggtgtttatccaagtcttggaaatctctaatttctgatcct 19360692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 223 - 329
Target Start/End: Original strand, 35766161 - 35766267
Alignment:
Q  223 tcctccccgatgaacttgtcactgaagttctttcattttccgatgtgaagttccttatgcaaatgaggtgtgtatgcaagtcttggaaatctataatctc 322  Q
    |||||||  |||| ||| |||||||||||||||| |||||||||||||| |  ||||| |||||||  ||  | |||||||||||||| |||||||||||    
T  35766161 tcctccctaatgatcttatcactgaagttctttccttttccgatgtgaaatctcttatccaaatgaaatgcctttgcaagtcttggaattctataatctc 35766260  T
Q  323 tgatcct 329  Q
     ||||||    
T  35766261 cgatcct 35766267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 280 - 329
Target Start/End: Original strand, 11240745 - 11240794
Alignment:
Q  280 tgcaaatgaggtgtgtatgcaagtcttggaaatctataatctctgatcct 329  Q
    |||| ||||||||  ||||||||||||||||||||||||| ||| |||||    
T  11240745 tgcacatgaggtggatatgcaagtcttggaaatctataatttctaatcct 11240794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 253 - 329
Target Start/End: Original strand, 29151107 - 29151183
Alignment:
Q  253 tttcattttccgatgtgaagttccttatgcaaatgaggtgtgtatgcaagtcttggaaatctataatctctgatcct 329  Q
    |||| |||||||||||||| |  |||||||||||||||||||||||||| ||||||| |||||| || |||||||||    
T  29151107 tttccttttccgatgtgaaatctcttatgcaaatgaggtgtgtatgcaaatcttggagatctatcatttctgatcct 29151183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 276 - 329
Target Start/End: Original strand, 26387145 - 26387198
Alignment:
Q  276 cttatgcaaatgaggtgtgtatgcaagtcttggaaatctataatctctgatcct 329  Q
    ||||||||||||||||  ||||||||||||||||||||||| || |||||||||    
T  26387145 cttatgcaaatgaggttcgtatgcaagtcttggaaatctatcatttctgatcct 26387198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 246 - 313
Target Start/End: Original strand, 2585800 - 2585867
Alignment:
Q  246 gaagttctttcattttccgatgtgaagttccttatgcaaatgaggtgtgtatgcaagtcttggaaatc 313  Q
    ||||||||||| |||||||||||||| |  ||||||| |||||| ||||||||||| |||||||||||    
T  2585800 gaagttctttccttttccgatgtgaaatctcttatgccaatgagatgtgtatgcaaatcttggaaatc 2585867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 251 - 329
Target Start/End: Original strand, 2576037 - 2576115
Alignment:
Q  251 tctttcattttccgatgtgaagttccttatgcaaatgaggtgtgtatgcaagtcttggaaatctataatctctgatcct 329  Q
    |||||| |||| |||||||||    ||||||| |||||||||||||||||| |||||||||||||| || |||||||||    
T  2576037 tctttcctttttcgatgtgaaaactcttatgcgaatgaggtgtgtatgcaaatcttggaaatctattatttctgatcct 2576115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 252 - 327
Target Start/End: Original strand, 2595169 - 2595244
Alignment:
Q  252 ctttcattttccgatgtgaagttccttatgcaaatgaggtgtgtatgcaagtcttggaaatctataatctctgatc 327  Q
    ||||| ||||| |||||||| |  |||||||||||||| || |||||||| |||||||||||||| || |||||||    
T  2595169 ctttccttttctgatgtgaaatcacttatgcaaatgagatgcgtatgcaaatcttggaaatctattatttctgatc 2595244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 252 - 329
Target Start/End: Original strand, 2580420 - 2580497
Alignment:
Q  252 ctttcattttccgatgtgaagttccttatgcaaatgaggtgtgtatgcaagtcttggaaatctataatctctgatcct 329  Q
    |||||||||||  ||||||| |  ||||||| |||||| || |||||||| ||||||| |||||| || |||||||||    
T  2580420 ctttcattttctaatgtgaaatctcttatgcgaatgagatgcgtatgcaaatcttggagatctatcatttctgatcct 2580497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University