View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18163_low_10 (Length: 329)
Name: NF18163_low_10
Description: NF18163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18163_low_10 |
 | |
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| [»] chr7 (4 HSPs) |
| |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 303; Significance: 1e-170; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 7 - 329
Target Start/End: Original strand, 36259164 - 36259486
Alignment:
| Q |
7 |
atttcaaagaataaagagaaaaccaaaaccctaatataacaagagagaaagaaaagcctttggctgcagaagagtaagaggaagacttcaaaaaccaaaa |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
36259164 |
atttcaaagaataaagagaaaaccaaaaccctaatataacaagagagaaagaaaagcctttggctgcagaagagtaagaggaagacttctaaaaccaaaa |
36259263 |
T |
|
| Q |
107 |
ccctgtcaaatcagaaactcaaaacatgagaggcaagtgtccacgcaaaaagaaaatattatctcacaagactgattgcagtacgagattcccaatcaaa |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
36259264 |
ccctgtcaaatcagaaactcaaaacatgagaggcaagtgtccacgcaaaatgaaaatattatctcacaagactgattgcagtacgagattcccgatcaaa |
36259363 |
T |
|
| Q |
207 |
ggtgatgagacggtgttcctccccgatgaacttgtcactgaagttctttcattttccgatgtgaagttccttatgcaaatgaggtgtgtatgcaagtctt |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
36259364 |
ggtgatgagacggtgttcctccccgatgaacttgtcactgaagttctttcattttccgatgtgaagttccttatgcaaatgagatgtgtatgcaagtctt |
36259463 |
T |
|
| Q |
307 |
ggaaatctataatctctgatcct |
329 |
Q |
| |
|
||||||||||||| ||||||||| |
|
|
| T |
36259464 |
ggaaatctataatttctgatcct |
36259486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 25 - 301
Target Start/End: Original strand, 36261978 - 36262270
Alignment:
| Q |
25 |
aaaaccaaaaccctaatataacaagagagaaagaaaagcctt------tggctgcagaagagtaagaggaa---gacttcaaaaaccaaaaccctgtcaa |
115 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| |||||||| |||||| |||||||||||||||| ||| |||||||||||||||| ||| |
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|
| T |
36261978 |
aaaaccaaaaccctaatctaacaagagagaaaggaaagccttaatcagtggctgtagaagagtaagaggaaccagaccgcaaaaaccaaaaccctaacaa |
36262077 |
T |
|
| Q |
116 |
atcagaaactcaaaacatgagaggcaagtgtccacgcaaaaag---------aaaatattatctcacaagactgattgcagtacgagattcccaatcaaa |
206 |
Q |
| |
|
||||||||||||||| |||||||||| ||||| |||| |||| | ||||||||||||||| ||||| ||||||||||||| || |||||| |
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|
| T |
36262078 |
atcagaaactcaaaa--tgagaggcaaatgtccccgcagaaaggtgaagaagagaatattatctcacaaatctgatcgcagtacgagattaccgatcaaa |
36262175 |
T |
|
| Q |
207 |
ggtgatgagacggtgttcctccccgatgaacttgtcactgaagttctttcattttccgatgtgaagttccttatgcaaatgaggtgtgtatgcaa |
301 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||| |
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|
| T |
36262176 |
ggtgatgacacggtgttcctccccgatgaacttgtcactgaagttctttcattttctgatgttaaattccttatgcaaatgaggtgtgtatgcaa |
36262270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 220 - 329
Target Start/End: Original strand, 36254498 - 36254607
Alignment:
| Q |
220 |
tgttcctccccgatgaacttgtcactgaagttctttcattttccgatgtgaagttccttatgcaaatgaggtgtgtatgcaagtcttggaaatctataat |
319 |
Q |
| |
|
|||||||||||||||||||| ||| |||||||||||||||||||||||||| |||||||||||||||||||| | |||||||||||||||||| |||| |
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|
| T |
36254498 |
tgttcctccccgatgaacttttcatggaagttctttcattttccgatgtgaaattccttatgcaaatgaggtgcctttgcaagtcttggaaatctctaat |
36254597 |
T |
|
| Q |
320 |
ctctgatcct |
329 |
Q |
| |
|
|| |||||| |
|
|
| T |
36254598 |
ttccgatcct |
36254607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 25 - 151
Target Start/End: Original strand, 36254263 - 36254393
Alignment:
| Q |
25 |
aaaaccaaaaccctaatataacaagagagaaagaaaagccttt----ggctgcagaagagtaagaggaag---acttcaaaaaccaaaaccctgtcaaat |
117 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||| | |||||||||||| |||||||||| || ||||||||||||||||| |||| |
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|
| T |
36254263 |
aaaaccaaaaccctaatataa--agagagaaagaaaagctaatcagcggctgcagaagattaagaggaagcagacctcaaaaaccaaaaccctaa-aaat |
36254359 |
T |
|
| Q |
118 |
cagaaactcaaaacatgagaggcaagtgtccacg |
151 |
Q |
| |
|
||||||||||||| ||| ||| | |||||||||| |
|
|
| T |
36254360 |
cagaaactcaaaaaatgggagacgagtgtccacg |
36254393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 140; Significance: 3e-73; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 7 - 317
Target Start/End: Original strand, 19353340 - 19353667
Alignment:
| Q |
7 |
atttcaaagaataaagagaaaaccaaaaccctaatataacaagagagaaagaaaagcctt------tggctgcagaagagtaagaggaag---acttcaa |
97 |
Q |
| |
|
||||||||||| ||| | ||||||||||||||||| |||||||||| ||||||||||||| ||||| | |||||| |||||| || |||| |
|
|
| T |
19353340 |
atttcaaagaaaaaa-ataaaaccaaaaccctaatctaacaagagaaaaagaaaagccttaatcagtggctataagagagtacgaggaaccatacctcaa |
19353438 |
T |
|
| Q |
98 |
aaaccaaaaccctgtcaaatcagaaactcaaaacatgagaggcaagtgtccacgc---------aaaaagaaaatattatctcacaagactgattgcagt |
188 |
Q |
| |
|
||||||||||||| |||||||| ||||||||| |||||||||||||||||||| || |||||||| ||||||||||| |||||| || || |
|
|
| T |
19353439 |
aaaccaaaaccctaacaaatcaggaactcaaaaaatgagaggcaagtgtccacgttagaaggcgaagaagaaaatgttatctcacaaaactgatcgccgt |
19353538 |
T |
|
| Q |
189 |
acgagattcccaatcaaaggtgatgagacggtgttcctccccgatgaacttgtcactgaagttctttcattttccgatgtgaagttccttatgcaaatga |
288 |
Q |
| |
|
|||||||| | |||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| || |||||||||||||||| |
|
|
| T |
19353539 |
acgagattgtcgatcaaaggtgatgacacggtgttcctccctgatgaacttgtcactgaagttctttcattttccgatgttaaattccttatgcaaatga |
19353638 |
T |
|
| Q |
289 |
ggtgtgtatgcaagtcttggaaatctata |
317 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
19353639 |
ggtgtgtatgcaagtcttggaaatctata |
19353667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 25 - 319
Target Start/End: Original strand, 19354976 - 19355288
Alignment:
| Q |
25 |
aaaaccaaaaccctaatataacaagagagaaagaaaagcctt------tggctgcagaagagtaagaggaa---gacttcaaaaaccaaaaccctgtcaa |
115 |
Q |
| |
|
||||||||||||||||| ||| | |||| ||||||||||||| | | || |||||||||||||||| ||| ||||||||||||||||| ||| |
|
|
| T |
19354976 |
aaaaccaaaaccctaatctaaaaggagaaaaagaaaagccttaattagttgttgtagaagagtaagaggaacaagacctcaaaaaccaaaaccctaacaa |
19355075 |
T |
|
| Q |
116 |
atcagaaactcaaaacatgagaggcaagtgtccacgcaaaaag---------aaaatattatctcacaagactgattgcagtacgagattcccaatcaaa |
206 |
Q |
| |
|
|||| ||||||||| || |||||||||| ||||||| ||||| ||||| ||| ||||||| ||| || || |||||||||| || |||||| |
|
|
| T |
19355076 |
ctcaggaactcaaaaaattagaggcaagtctccacgctaaaaggtgaagaagaaaatgttaactcacaaaacttatcgccgtacgagattaccgatcaaa |
19355175 |
T |
|
| Q |
207 |
ggtgatgagacggtgttcctccccgatgaacttgtcactgaagttctttcattttccgatgtgaagttccttatgcaaatgaggtgtgtatgcaagtctt |
306 |
Q |
| |
|
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |||||| || |||||||||||||||||||||||||||||||||| |
|
|
| T |
19355176 |
ggtgatgaaacggtgttcctccctgatgaacttgtcactgaagttctttcatttttcgatgttaaattccttatgcaaatgaggtgtgtatgcaagtctt |
19355275 |
T |
|
| Q |
307 |
ggaaatctataat |
319 |
Q |
| |
|
||||||||||||| |
|
|
| T |
19355276 |
ggaaatctataat |
19355288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 158 - 317
Target Start/End: Original strand, 19356605 - 19356764
Alignment:
| Q |
158 |
gaaaatattatctcacaagactgattgcagtacgagattcccaatcaaaggtgatgagacggtgttcctccccgatgaacttgtcactgaagttctttca |
257 |
Q |
| |
|
|||||| |||| | |||| |||||| || |||||||||| || ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19356605 |
gaaaatgttatattacaaaactgatcgccgtacgagattaccgatcaaagatgatgagacaatgttcctccccgatgaacttgtcactgaagttctttca |
19356704 |
T |
|
| Q |
258 |
ttttccgatgtgaagttccttatgcaaatgaggtgtgtatgcaagtcttggaaatctata |
317 |
Q |
| |
|
||||||| ||| || ||||||||||||||||||||||||||||| ||||| ||||||||| |
|
|
| T |
19356705 |
ttttccggtgttaaattccttatgcaaatgaggtgtgtatgcaattcttgaaaatctata |
19356764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 25 - 319
Target Start/End: Original strand, 19358049 - 19358361
Alignment:
| Q |
25 |
aaaaccaaaaccctaatataacaagagagaaagaaaagcctt------tggctgcagaagagtaagaggaa---gacttcaaaaaccaaaaccctgtcaa |
115 |
Q |
| |
|
||||| |||||| |||| ||| ||||| ||||||||||||| |||||| |||||||||||||||| ||| |||||||||||||||| || |
|
|
| T |
19358049 |
aaaactaaaaccgtaatctaaatagagaaaaagaaaagccttaatcaatggctgtagaagagtaagaggaaccagaccacaaaaaccaaaaccctaataa |
19358148 |
T |
|
| Q |
116 |
atcagaaactcaaaacatgagaggcaagtgtccacgcaaaaag---------aaaatattatctcacaagactgattgcagtacgagattcccaatcaaa |
206 |
Q |
| |
|
||||| ||||||||| ||||||||||||||||||||| |||| ||||| ||||||||||| ||||| | ||| |||||| | |||||| |
|
|
| T |
19358149 |
atcaggaactcaaaaaatgagaggcaagtgtccacgctgaaagttgaagaataaaatgttatctcacaaaactgaccgtcgtatgagattactgatcaaa |
19358248 |
T |
|
| Q |
207 |
ggtgatgagacggtgttcctccccgatgaacttgtcactgaagttctttcattttccgatgtgaagttccttatgcaaatgaggtgtgtatgcaagtctt |
306 |
Q |
| |
|
|||||| | |||||||||||||| ||||| ||||||||| |||||||||| ||||||||||| || |||||||||||||||||||||||||| | |||| |
|
|
| T |
19358249 |
ggtgataacacggtgttcctccctgatgagcttgtcactaaagttctttcgttttccgatgttaaattccttatgcaaatgaggtgtgtatggatctctt |
19358348 |
T |
|
| Q |
307 |
ggaaatctataat |
319 |
Q |
| |
|
||||||||||||| |
|
|
| T |
19358349 |
ggaaatctataat |
19358361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 231 - 329
Target Start/End: Original strand, 19360594 - 19360692
Alignment:
| Q |
231 |
gatgaacttgtcactgaagttctttcattttccgatgtgaagttccttatgcaaatgaggtgtgtatgcaagtcttggaaatctataatctctgatcct |
329 |
Q |
| |
|
||||||||| |||||||||||||||| || |||||||| ||||| ||| ||||||||||| ||| |||||||||||||||| |||| ||||||||| |
|
|
| T |
19360594 |
gatgaacttatcactgaagttctttccttcgttgatgtgaaattcctcatgtaaatgaggtgtttatccaagtcttggaaatctctaatttctgatcct |
19360692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 223 - 329
Target Start/End: Original strand, 35766161 - 35766267
Alignment:
| Q |
223 |
tcctccccgatgaacttgtcactgaagttctttcattttccgatgtgaagttccttatgcaaatgaggtgtgtatgcaagtcttggaaatctataatctc |
322 |
Q |
| |
|
||||||| |||| ||| |||||||||||||||| |||||||||||||| | ||||| ||||||| || | |||||||||||||| ||||||||||| |
|
|
| T |
35766161 |
tcctccctaatgatcttatcactgaagttctttccttttccgatgtgaaatctcttatccaaatgaaatgcctttgcaagtcttggaattctataatctc |
35766260 |
T |
|
| Q |
323 |
tgatcct |
329 |
Q |
| |
|
|||||| |
|
|
| T |
35766261 |
cgatcct |
35766267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 280 - 329
Target Start/End: Original strand, 11240745 - 11240794
Alignment:
| Q |
280 |
tgcaaatgaggtgtgtatgcaagtcttggaaatctataatctctgatcct |
329 |
Q |
| |
|
|||| |||||||| ||||||||||||||||||||||||| ||| ||||| |
|
|
| T |
11240745 |
tgcacatgaggtggatatgcaagtcttggaaatctataatttctaatcct |
11240794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 253 - 329
Target Start/End: Original strand, 29151107 - 29151183
Alignment:
| Q |
253 |
tttcattttccgatgtgaagttccttatgcaaatgaggtgtgtatgcaagtcttggaaatctataatctctgatcct |
329 |
Q |
| |
|
|||| |||||||||||||| | |||||||||||||||||||||||||| ||||||| |||||| || ||||||||| |
|
|
| T |
29151107 |
tttccttttccgatgtgaaatctcttatgcaaatgaggtgtgtatgcaaatcttggagatctatcatttctgatcct |
29151183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 276 - 329
Target Start/End: Original strand, 26387145 - 26387198
Alignment:
| Q |
276 |
cttatgcaaatgaggtgtgtatgcaagtcttggaaatctataatctctgatcct |
329 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||| || ||||||||| |
|
|
| T |
26387145 |
cttatgcaaatgaggttcgtatgcaagtcttggaaatctatcatttctgatcct |
26387198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 246 - 313
Target Start/End: Original strand, 2585800 - 2585867
Alignment:
| Q |
246 |
gaagttctttcattttccgatgtgaagttccttatgcaaatgaggtgtgtatgcaagtcttggaaatc |
313 |
Q |
| |
|
||||||||||| |||||||||||||| | ||||||| |||||| ||||||||||| ||||||||||| |
|
|
| T |
2585800 |
gaagttctttccttttccgatgtgaaatctcttatgccaatgagatgtgtatgcaaatcttggaaatc |
2585867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 251 - 329
Target Start/End: Original strand, 2576037 - 2576115
Alignment:
| Q |
251 |
tctttcattttccgatgtgaagttccttatgcaaatgaggtgtgtatgcaagtcttggaaatctataatctctgatcct |
329 |
Q |
| |
|
|||||| |||| ||||||||| ||||||| |||||||||||||||||| |||||||||||||| || ||||||||| |
|
|
| T |
2576037 |
tctttcctttttcgatgtgaaaactcttatgcgaatgaggtgtgtatgcaaatcttggaaatctattatttctgatcct |
2576115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 252 - 327
Target Start/End: Original strand, 2595169 - 2595244
Alignment:
| Q |
252 |
ctttcattttccgatgtgaagttccttatgcaaatgaggtgtgtatgcaagtcttggaaatctataatctctgatc |
327 |
Q |
| |
|
||||| ||||| |||||||| | |||||||||||||| || |||||||| |||||||||||||| || ||||||| |
|
|
| T |
2595169 |
ctttccttttctgatgtgaaatcacttatgcaaatgagatgcgtatgcaaatcttggaaatctattatttctgatc |
2595244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 252 - 329
Target Start/End: Original strand, 2580420 - 2580497
Alignment:
| Q |
252 |
ctttcattttccgatgtgaagttccttatgcaaatgaggtgtgtatgcaagtcttggaaatctataatctctgatcct |
329 |
Q |
| |
|
||||||||||| ||||||| | ||||||| |||||| || |||||||| ||||||| |||||| || ||||||||| |
|
|
| T |
2580420 |
ctttcattttctaatgtgaaatctcttatgcgaatgagatgcgtatgcaaatcttggagatctatcatttctgatcct |
2580497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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