View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18163_low_11 (Length: 325)

Name: NF18163_low_11
Description: NF18163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18163_low_11
NF18163_low_11
[»] chr1 (4 HSPs)
chr1 (33-267)||(7634597-7634839)
chr1 (131-307)||(7627404-7627609)
chr1 (196-307)||(7622853-7622981)
chr1 (272-307)||(7634540-7634575)


Alignment Details
Target: chr1 (Bit Score: 103; Significance: 3e-51; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 33 - 267
Target Start/End: Complemental strand, 7634839 - 7634597
Alignment:
Q  33 aattagaaaataattgaaaaatt-atggataacttaaattcatccttcttcatcttctatttcatattttcattaaacatgatatgttgattaatattta 131  Q
    ||||||||||||||||||||||| |||||||| || |||||||||||||||||||||||||||||      |   || || ||||  |||||||||||||    
T  7634839 aattagaaaataattgaaaaatttatggataattttaattcatccttcttcatcttctatttcatt-----aaacaagataatattgtgattaatattta 7634745  T
Q  132 agtttatgtagttaattaaacacatgcatattatatatgcagaacatctttatagcaggaa------------caacagtagtggtttggtctatgacaa 219  Q
    ||||||||| |||||||||  |||||||||||||||||||||||||| |||||||||||||            || || ||||||||||| |||||||||    
T  7634744 agtttatgtggttaattaacgacatgcatattatatatgcagaacatttttatagcaggaacagacacaagttcagcaatagtggtttgggctatgacaa 7634645  T
Q  220 cactgatgaacaatccaagagtgatgaacaaggttcaaatggaaatca 267  Q
    || ||||||||||||| |||||||||||||||||||||||||||||||    
T  7634644 cattgatgaacaatcctagagtgatgaacaaggttcaaatggaaatca 7634597  T

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Target: chr1; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 131 - 307
Target Start/End: Complemental strand, 7627609 - 7627404
Alignment:
Q  131 aagtttatgtagttaattaaacacatgcatattatatatgcagaacatctttatagcaggaacaa------------cagtagtggtttggtctatgaca 218  Q
    ||||||||| | ||||||||||||||||||||||| |||||||||||||||||| |||||||||             ||| |||||||||| ||||||||    
T  7627609 aagtttatgcatttaattaaacacatgcatattatgtatgcagaacatctttattgcaggaacagacacaagttcagcagcagtggtttgggctatgaca 7627510  T
Q  219 acactgatgaacaatccaagagtgatgaacaaggttcaaatggaaatca-----------------aaagattttataaatgaagatgatattgaaaagc 301  Q
     || |||||||||||||||||||||||||||||||||||||||||||||                 ||||||||||||||||||||||||||||||||||    
T  7627509 gcattgatgaacaatccaagagtgatgaacaaggttcaaatggaaatcagaaacttatatgaagacaaagattttataaatgaagatgatattgaaaagc 7627410  T
Q  302 ttcctt 307  Q
    ||||||    
T  7627409 ttcctt 7627404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 196 - 307
Target Start/End: Complemental strand, 7622981 - 7622853
Alignment:
Q  196 cagtagtggtttggtctatgacaacactgatgaacaatccaagagtgatgaacaaggttcaaatggaaatca-----------------aaagattttat 278  Q
    |||||||||||||| |||||||| || |||||||||||||||||||||||||||||||||||||||||||||                 |||||||||||    
T  7622981 cagtagtggtttgggctatgacagcattgatgaacaatccaagagtgatgaacaaggttcaaatggaaatcagaaacttatatgaagacaaagattttat 7622882  T
Q  279 aaatgaagatgatattgaaaagcttcctt 307  Q
    |||||||||||||||||||||||||||||    
T  7622881 aaatgaagatgatattgaaaagcttcctt 7622853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 272 - 307
Target Start/End: Complemental strand, 7634575 - 7634540
Alignment:
Q  272 attttataaatgaagatgatattgaaaagcttcctt 307  Q
    ||||||||||||||||||||||||||||||| ||||    
T  7634575 attttataaatgaagatgatattgaaaagctacctt 7634540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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