View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18163_low_12 (Length: 319)
Name: NF18163_low_12
Description: NF18163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18163_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 295; Significance: 1e-166; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 1 - 303
Target Start/End: Complemental strand, 34980707 - 34980405
Alignment:
| Q |
1 |
aagtaattcaactagtttagttggtcttatcttaatcaattccatgtcccgagaagcttcaatcggaaaaccttggccaaaaacttcctttgttgacatt |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
34980707 |
aagtaattcaactagtttagttggtcttatcttaatcaattccatgtcccgagaagcttcaatcggaaaaccttgtccaaaaacttcctttgttgacatt |
34980608 |
T |
|
| Q |
101 |
ggattttgatttcgacacgaatcaaaactaggtatagtttcaagatctccaacttcaaccatcttaacaattgcaattaacgatgcatcaacctgactaa |
200 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34980607 |
ggattttgatttcgacacaaatcaaaactaggtatagtttcaagatctccaacttcaaccatcttaacaattgcaattaacgatgcatcaacctgactaa |
34980508 |
T |
|
| Q |
201 |
attgtttcaaatattcaatataatcaagaatttcgtacctatgttccttatgttgatgccatacaggattgttttctgcaaatgtatcttgtacagttcc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34980507 |
attgtttcaaatattcaatataatcaagaatttcgtacctatgttccttatgttgatgccatacaggattgttttctgcaaatgtatcttgtacagttcc |
34980408 |
T |
|
| Q |
301 |
ttc |
303 |
Q |
| |
|
||| |
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|
| T |
34980407 |
ttc |
34980405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 281
Target Start/End: Complemental strand, 34993109 - 34992829
Alignment:
| Q |
1 |
aagtaattcaactagtttagttggtcttatcttaatcaattccatgtcccgagaagcttcaatcggaaaaccttggccaaaaacttcctttgttgacatt |
100 |
Q |
| |
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||||| |||||||||||||||||| ||||||||||||||| |||| ||||| ||| |||||||| | |||||||| |||||||| ||||||||||||||| |
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| T |
34993109 |
aagtacttcaactagtttagttggacttatcttaatcaatgccatatcccgtgaaccttcaatctgcaaaccttgtccaaaaacgtcctttgttgacatt |
34993010 |
T |
|
| Q |
101 |
ggattttgatttcgacacgaatcaaaactaggtatagtttcaagatctccaacttcaaccatcttaacaattgcaattaacgatgcatcaacctgactaa |
200 |
Q |
| |
|
|||| ||| |||||||||||||||||||||| | |||| ||||||||||||||||||||||||||||| | ||||| ||||||||||||||||||| |
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| T |
34993009 |
ggatcttggattcgacacgaatcaaaactaggcagtgtttgaagatctccaacttcaaccatcttaacaagctccattaatgatgcatcaacctgactaa |
34992910 |
T |
|
| Q |
201 |
attgtttcaaatattcaatataatcaagaatttcgtacctatgttccttatgttgatgccatacaggattgttttctgcaa |
281 |
Q |
| |
|
||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34992909 |
attgtttcaaatattcaatattatcgagaatttcgtacctatgttccttatgttgatgccatacaggattgttttctgcaa |
34992829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 1 - 281
Target Start/End: Complemental strand, 34985154 - 34984877
Alignment:
| Q |
1 |
aagtaattcaactagtttagttggtcttatcttaatcaattccatgtcccgagaagcttcaatcggaaaaccttggccaaaaacttcctttgttgacatt |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||| || |||||||||||||||||||| | |||||||| ||||||||||| |||| ||||| |
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| T |
34985154 |
aagtaattcaactagtttagttggacttatcttaatcaatgccttgtcccgagaagcttcaatctgcaaaccttgttcaaaaacttccattgtatacatt |
34985055 |
T |
|
| Q |
101 |
ggattttgatttcgacacgaatcaaaactaggtatagtttcaagatctccaacttcaaccatcttaacaattgcaattaacgatgcatcaacctgactaa |
200 |
Q |
| |
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| |||||| ||||||||| ||||||||||||||| ||||| ||| |||||||||||||||| ||||||||| | | ||| | ||||||||| | || |
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| T |
34985054 |
gaattttggtttcgacacaaatcaaaactaggtaaagtttgaagctctccaacttcaaccaacttaacaatctccaataatgttgcatcaacacagccaa |
34984955 |
T |
|
| Q |
201 |
attgtttcaaatattcaatataatcaagaatttcgtacctatgttccttatgttgatgccatacaggattgttttctgcaa |
281 |
Q |
| |
|
|||||||||||||||||| || ||| ||||||||||||||||||||| |||||||||||||||| |||||||||||||| |
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| T |
34984954 |
attgtttcaaatattcaaaatcatcgagaatttcgtacctatgttccctatgttgatgccatac---attgttttctgcaa |
34984877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 1 - 263
Target Start/End: Original strand, 27542492 - 27542756
Alignment:
| Q |
1 |
aagtaattcaactagtttagttggtcttatcttaatcaattccatgtcccgagaagcttcaatcggaaaaccttggccaaaaacttcctttgttgacatt |
100 |
Q |
| |
|
||||| |||||||||||||||||| ||||||||||||||| |||||| |||| ||||||||||| | |||||||| |||||||||| | |||| ||||| |
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| T |
27542492 |
aagtatttcaactagtttagttggacttatcttaatcaatgccatgttccgaaaagcttcaatctgcaaaccttgtccaaaaactttcattgtgtacatt |
27542591 |
T |
|
| Q |
101 |
ggattttgatttcgacacgaatcaaaactaggtatagtttcaagatctccaacttcaaccatcttaacaattgcaattaacgatgcatcaacctgactaa |
200 |
Q |
| |
|
|||||||| ||||||||| ||||||||||||||| ||||| || |||||||||||||||| | || ||| | ||||| | |||||||||| ||| | |
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| T |
27542592 |
ggattttggtttcgacacaaatcaaaactaggtaaagtttaaaattctccaacttcaaccaacctattaatctccattaatgttgcatcaacccgaccat |
27542691 |
T |
|
| Q |
201 |
attgtttcaaatattcaatata--atcaagaatttcgtacctatgttccttatgttgatgccata |
263 |
Q |
| |
|
|||||||||||| ||||||||| ||| ||||||||||||||||||||||||||||||||||||| |
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| T |
27542692 |
attgtttcaaattttcaatatatcatcgagaatttcgtacctatgttccttatgttgatgccata |
27542756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 44 - 283
Target Start/End: Complemental strand, 27543854 - 27543618
Alignment:
| Q |
44 |
atgtcccgagaagcttcaatcggaaaaccttggccaaaaacttcctttgttgacattggattttgatttcgacacgaatcaaaactaggtatagtttcaa |
143 |
Q |
| |
|
|||||| |||||||||||||| | ||||| || |||||||||||| |||| ||||||||||||| ||||||||| ||||||||||||||| ||||| || |
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| T |
27543854 |
atgtcctgagaagcttcaatctgcaaaccatgtccaaaaacttccattgtgtacattggattttggtttcgacacaaatcaaaactaggtaaagtttgaa |
27543755 |
T |
|
| Q |
144 |
gatctccaacttcaaccatcttaacaattgcaattaacgatgcatcaacctgactaaattgtttcaaatattcaatataatcaagaatttcgtacctatg |
243 |
Q |
| |
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| ||||||||| ||| || | ||||||| | ||||| | |||||||||| || ||||||||||||||||||||||| ||| ||||||||||||||||| |
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| T |
27543754 |
gctctccaactccaagcaacctaacaatctccattaatgttgcatcaacccaaccaaattgtttcaaatattcaatatcatcgagaatttcgtacctatg |
27543655 |
T |
|
| Q |
244 |
ttccttatgttgatgccatacaggattgttttctgcaaat |
283 |
Q |
| |
|
||||||||||||||| ||||| |||||||||||||||| |
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| T |
27543654 |
ttccttatgttgatgtcatac---attgttttctgcaaat |
27543618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 265
Target Start/End: Complemental strand, 27583223 - 27582957
Alignment:
| Q |
1 |
aagtaattcaactagtttagttggtcttatcttaatcaa--ttccatgtcccgagaagcttcaatcggaaaaccttggccaaaaacttcctttgttgaca |
98 |
Q |
| |
|
|||||||||| |||||||||||| | ||| |||||||| | ||||||| ||||||||||||||| |||||||| ||||||| |||| |||| ||| |
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|
| T |
27583223 |
aagtaattcatctagtttagttgaacatatattaatcaacatgccatgtctcgagaagcttcaatcaacaaaccttgtccaaaaatttccattgtgtaca |
27583124 |
T |
|
| Q |
99 |
ttggattttgatttcgacacgaatcaaaactaggtatagtttcaagatctccaacttcaaccatcttaacaattgcaattaacgatgcatcaacctgact |
198 |
Q |
| |
|
|||||||||| ||||||||| ||| ||||||||||| ||||| ||| ||||||||| |||||| | ||||||| | ||| | | |||||||||| ||| |
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|
| T |
27583123 |
ttggattttggtttcgacacaaattaaaactaggtaaagtttgaagctctccaactccaaccaacctaacaatctccattgatgttgcatcaacccgacc |
27583024 |
T |
|
| Q |
199 |
aaattgtttcaaatattcaatataatcaagaatttcgtacctatgttccttatgttgatgccataca |
265 |
Q |
| |
|
||||||||||||||||| ||||| ||| |||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
27583023 |
aaattgtttcaaatattaaatattatcgagaatttcgtacttatgttccttatgttgatgccataca |
27582957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 265
Target Start/End: Original strand, 27581385 - 27581647
Alignment:
| Q |
1 |
aagtaattcaactagtttagttggtcttatcttaatcaattccatgtcccgagaagcttcaatcggaaaaccttggccaaaaacttcctttgttgacatt |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| |||| ||||||||| || ||||||||| |||||||| ||| |||||||| |||| ||||| |
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| T |
27581385 |
aagtaattcaactagtttagttggaattatcttaaccaatgccatgtcccacgaggcttcaatctataaaccttgtccagaaacttccattgtgtacatt |
27581484 |
T |
|
| Q |
101 |
ggattttgatttcgacacgaatcaaaactaggtatagtttcaagatctccaacttcaaccatcttaacaattgcaattaacgatgcatcaacctgactaa |
200 |
Q |
| |
|
|||||||||||| ||| ||||||||||||||| ||||| ||| |||||||||||||||| | ||| ||| | ||||| | |||||||||| ||| || |
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|
| T |
27581485 |
ggattttgattttcaca--aatcaaaactaggtaaagtttgaagctctccaacttcaaccaacctaataatctccattaatgttgcatcaacccgaccaa |
27581582 |
T |
|
| Q |
201 |
attgtttcaaatattcaatataatcaagaatttcgtacctatgttccttatgttgatgccataca |
265 |
Q |
| |
|
||||||||||||||||||||| || ||||||| |||||||| ||||||||||||||||||||| |
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|
| T |
27581583 |
attgtttcaaatattcaatatcatggagaattttgtacctattgtccttatgttgatgccataca |
27581647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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