View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18163_low_13 (Length: 307)

Name: NF18163_low_13
Description: NF18163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18163_low_13
NF18163_low_13
[»] scaffold0008 (2 HSPs)
scaffold0008 (65-287)||(69070-69292)
scaffold0008 (65-287)||(76913-77135)


Alignment Details
Target: scaffold0008 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 65 - 287
Target Start/End: Original strand, 69070 - 69292
Alignment:
Q  65 acatattataaccaatcaaaggtctccacttacccaggtatagttctgatcatgttgttattttatttgaattagaagctaattttatgagagggaggaa 164  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  69070 acatattataaccaatcaaaggtttccacttacccaggtatagttctgatcatgttgttattttatttgaattagaagctaattttatgagagggaggaa 69169  T
Q  165 gaaaagaaaacatatatttatatttgaagaggcttcgagaaaggatgaaaattatgaagaaattatcaggagtgtgtcgatggggtggggggagctacgt 264  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  69170 gaaaagaaaacatatatttatatttgaagaggcttcgagaaaggatgaaaattatgaagaaattatcaggagtgtgtcgatggggtggggggagctacgt 69269  T
Q  265 ataattgtttagagaaaatccaa 287  Q
    |||||||||||||||| ||||||    
T  69270 ataattgtttagagaagatccaa 69292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 65 - 287
Target Start/End: Original strand, 76913 - 77135
Alignment:
Q  65 acatattataaccaatcaaaggtctccacttacccaggtatagttctgatcatgttgttattttatttgaattagaagctaattttatgagagggaggaa 164  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  76913 acatattataaccaatcaaaggtttccacttacccaggtatagttctgatcatgttgttattttatttgaattagaagctaattttatgagagggaggaa 77012  T
Q  165 gaaaagaaaacatatatttatatttgaagaggcttcgagaaaggatgaaaattatgaagaaattatcaggagtgtgtcgatggggtggggggagctacgt 264  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  77013 gaaaagaaaacatatatttatatttgaagaggcttcgagaaaggatgaaaattatgaagaaattatcaggagtgtgtcgatggggtggggggagctacgt 77112  T
Q  265 ataattgtttagagaaaatccaa 287  Q
    |||||||||||||||| ||||||    
T  77113 ataattgtttagagaagatccaa 77135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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