View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18163_low_16 (Length: 289)
Name: NF18163_low_16
Description: NF18163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18163_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 277
Target Start/End: Original strand, 45970193 - 45970470
Alignment:
| Q |
1 |
cccagtgttgtcaaacggctgttatagcagcattacagtactaaagcgttaagagaattagaacatattgctctttttccgtgatacactatttagtaaa |
100 |
Q |
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| T |
45970193 |
cccagtgttgtcaaacggctgttatagcagcattacagtactaaagcgttaagagaattagaacatattgctctttttccgtgaaacactatttagtaaa |
45970292 |
T |
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| Q |
101 |
aaactcgaataaggttcacagtagcgccgcaatagcaggaacaatattcactgtgaacctaaatagcatgtcgcgtaacataattttaatgtagcgctat |
200 |
Q |
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| T |
45970293 |
aaactcgaataaggttcacagtagcgccgcaatagcaggaacaatattcactgtgaacctaaatagcatgccgcgtaacataattttaatgtagcactat |
45970392 |
T |
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| Q |
201 |
tgataagagtttggtaacagtgatttcttccttaataa-gttcacggtattaacatcctgaccaatggtacctatgct |
277 |
Q |
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| T |
45970393 |
tgataagagtttggttacagttatttcttccttaataaggttcacggtattaacatcctgaccaatggtacctatgct |
45970470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 50 - 277
Target Start/End: Original strand, 45974774 - 45975006
Alignment:
| Q |
50 |
taagagaattagaacatattgctctttttccgtgatacactatttagtaaaaaact----cgaataaggttcacagtagcgccgcaatagcaggaacaat |
145 |
Q |
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| T |
45974774 |
taagagaatttgaacatattgctctttttccgtgatacgctattttgtaaaaaactttgtcaaataagattcatagtagcgcccctgtagcaggaaaaag |
45974873 |
T |
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| Q |
146 |
attcactgtgaacctaaatagcatgtcgcgtaacataattttaatgtagcgctattgataagagtttggtaacagtgatttcttccttaataa-gttcac |
244 |
Q |
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|||| ||||||||||||||||||||||||||||| |||||||| |||| |||||| | || ||||| |||||||| ||||| ||||||||| |||||| |
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| T |
45974874 |
gttcaatgtgaacctaaatagcatgtcgcgtaacagaattttaacatagcactattgttcagcgtttgataacagtggtttctcccttaataaggttcac |
45974973 |
T |
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| Q |
245 |
ggtattaacatcctgaccaatggtacctatgct |
277 |
Q |
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| T |
45974974 |
ggtattaacatcctgacctatggcacctatgct |
45975006 |
T |
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