View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18163_low_18 (Length: 281)
Name: NF18163_low_18
Description: NF18163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18163_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 16 - 262
Target Start/End: Original strand, 14813362 - 14813608
Alignment:
| Q |
16 |
atgactggttgatcaaaacaagtgataatgtgtttcagagttggcgctgaattagtcaattcctatagaattcaaatataaaaaatcttaactatatctt |
115 |
Q |
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| T |
14813362 |
atgactggttgatcaaaacatgtgataatgtgtttcagagttggcgctgaattagtcaattcctctagaattcaaatataaaaaatcttaactatatctt |
14813461 |
T |
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| Q |
116 |
cttcttggcccacttgggacacgagatatgccattcaaaattaaacacagtagtacgtacgtaacgctgtgatactgtgacagttaaccacttttcttcc |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14813462 |
cttcttggcccacttgggacacgagatatgccattcaaaattaaacacagtagtacgtacgtaacgctgtgatactgtgacagttaaccacttttcttcc |
14813561 |
T |
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| Q |
216 |
tcaattctgttccaattgcagcatctactatcaaacattacatacaa |
262 |
Q |
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| T |
14813562 |
tcaattctgttccaattgcagcatctactatcaaacattacatacaa |
14813608 |
T |
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